data_3UFT # _model_server_result.job_id cVbw2ZQjc6I_ydtpR8mxyw _model_server_result.datetime_utc '2024-11-23 15:45:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uft # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":800}' # _entry.id 3UFT # _exptl.entry_id 3UFT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 407.909 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-({(3R,4R)-4-[4-(3-chloro-5-fluorophenoxy)butoxy]pyrrolidin-3-yl}methyl)-4-methylpyridin-2-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UFT _cell.length_a 51.845 _cell.length_b 111.224 _cell.length_c 164.111 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UFT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 30 A CYS 326 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc2 A SG CYS 35 A CYS 331 1_555 G ZN ZN . A ZN 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc3 A SG CYS 119 A CYS 415 1_555 C FE HEM . A HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc4 G ZN ZN . A ZN 900 1_555 B SG CYS 30 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 G ZN ZN . A ZN 900 1_555 B SG CYS 35 B CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc6 B SG CYS 119 B CYS 415 1_555 H FE HEM . B HEM 750 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'C21 H27 Cl F N3 O2' _chem_comp.formula_weight 407.909 _chem_comp.id HW7 _chem_comp.mon_nstd_flag . _chem_comp.name 6-({(3R,4R)-4-[4-(3-chloro-5-fluorophenoxy)butoxy]pyrrolidin-3-yl}methyl)-4-methylpyridin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F23 C23 HW7 sing 273 n n C23 C22 HW7 doub 274 n y C23 C24 HW7 sing 275 n y C22 C21 HW7 sing 276 n y C24 C25 HW7 doub 277 n y C21 O14 HW7 sing 278 n n C21 C26 HW7 doub 279 n y C11 C12 HW7 sing 280 n n C11 C10 HW7 sing 281 n n O14 C13 HW7 sing 282 n n C25 C26 HW7 sing 283 n y C25 CL2 HW7 sing 284 n n C13 C12 HW7 sing 285 n n C10 O09 HW7 sing 286 n n O09 C3' HW7 sing 287 n n C08 C06 HW7 sing 288 n n C08 C4' HW7 sing 289 n n C06 N01 HW7 doub 290 n y C06 C05 HW7 sing 291 n y N01 C02 HW7 sing 292 n y C3' C4' HW7 sing 293 n n C3' C2' HW7 sing 294 n n C4' C5' HW7 sing 295 n n C05 C04 HW7 doub 296 n y N02 C02 HW7 sing 297 n n C02 C03 HW7 doub 298 n y C04 C03 HW7 sing 299 n y C04 C07 HW7 sing 300 n n C2' N1' HW7 sing 301 n n C5' N1' HW7 sing 302 n n C24 H1 HW7 sing 303 n n C22 H2 HW7 sing 304 n n C26 H3 HW7 sing 305 n n C13 H4 HW7 sing 306 n n C13 H5 HW7 sing 307 n n C12 H6 HW7 sing 308 n n C12 H7 HW7 sing 309 n n C11 H8 HW7 sing 310 n n C11 H9 HW7 sing 311 n n C10 H10 HW7 sing 312 n n C10 H11 HW7 sing 313 n n C3' H12 HW7 sing 314 n n C2' H13 HW7 sing 315 n n C2' H14 HW7 sing 316 n n C4' H15 HW7 sing 317 n n C5' H16 HW7 sing 318 n n C5' H17 HW7 sing 319 n n N1' H18 HW7 sing 320 n n C08 H20 HW7 sing 321 n n C08 H21 HW7 sing 322 n n C05 H22 HW7 sing 323 n n C07 H23 HW7 sing 324 n n C07 H24 HW7 sing 325 n n C07 H25 HW7 sing 326 n n C03 H26 HW7 sing 327 n n N02 H27 HW7 sing 328 n n N02 H28 HW7 sing 329 n n # _atom_sites.entry_id 3UFT _atom_sites.fract_transf_matrix[1][1] 0.019288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 750 750 HEM HEM . D 3 H4B A 1 760 760 H4B BH4 . E 4 HW7 A 1 800 800 HW7 HW7 . F 5 ACT A 1 860 860 ACT ACT . G 6 ZN A 1 900 900 ZN ZN . H 2 HEM B 1 750 750 HEM HEM . I 3 H4B B 1 760 760 H4B BH4 . J 4 HW7 B 1 800 800 HW7 HW7 . K 5 ACT B 1 860 860 ACT ACT . L 7 HOH A 1 2 2 HOH HOH . L 7 HOH A 2 4 4 HOH HOH . L 7 HOH A 3 8 8 HOH HOH . L 7 HOH A 4 11 11 HOH HOH . L 7 HOH A 5 13 13 HOH HOH . L 7 HOH A 6 14 14 HOH HOH . L 7 HOH A 7 15 15 HOH HOH . L 7 HOH A 8 21 21 HOH HOH . L 7 HOH A 9 23 23 HOH HOH . L 7 HOH A 10 24 24 HOH HOH . L 7 HOH A 11 26 26 HOH HOH . L 7 HOH A 12 27 27 HOH HOH . L 7 HOH A 13 30 30 HOH HOH . L 7 HOH A 14 32 32 HOH HOH . L 7 HOH A 15 35 35 HOH HOH . L 7 HOH A 16 41 41 HOH HOH . L 7 HOH A 17 46 46 HOH HOH . L 7 HOH A 18 47 47 HOH HOH . L 7 HOH A 19 48 48 HOH HOH . L 7 HOH A 20 49 49 HOH HOH . L 7 HOH A 21 54 54 HOH HOH . L 7 HOH A 22 55 55 HOH HOH . L 7 HOH A 23 57 57 HOH HOH . L 7 HOH A 24 61 61 HOH HOH . L 7 HOH A 25 64 64 HOH HOH . L 7 HOH A 26 68 68 HOH HOH . L 7 HOH A 27 71 71 HOH HOH . L 7 HOH A 28 73 73 HOH HOH . L 7 HOH A 29 74 74 HOH HOH . L 7 HOH A 30 75 75 HOH HOH . L 7 HOH A 31 77 77 HOH HOH . L 7 HOH A 32 79 79 HOH HOH . L 7 HOH A 33 80 80 HOH HOH . L 7 HOH A 34 86 86 HOH HOH . L 7 HOH A 35 92 92 HOH HOH . L 7 HOH A 36 94 94 HOH HOH . L 7 HOH A 37 95 95 HOH HOH . L 7 HOH A 38 100 100 HOH HOH . L 7 HOH A 39 101 101 HOH HOH . L 7 HOH A 40 102 102 HOH HOH . L 7 HOH A 41 106 106 HOH HOH . L 7 HOH A 42 107 107 HOH HOH . L 7 HOH A 43 112 112 HOH HOH . L 7 HOH A 44 113 113 HOH HOH . L 7 HOH A 45 115 115 HOH HOH . L 7 HOH A 46 117 117 HOH HOH . L 7 HOH A 47 118 118 HOH HOH . L 7 HOH A 48 119 119 HOH HOH . L 7 HOH A 49 120 120 HOH HOH . L 7 HOH A 50 122 122 HOH HOH . L 7 HOH A 51 124 124 HOH HOH . L 7 HOH A 52 130 130 HOH HOH . L 7 HOH A 53 131 131 HOH HOH . L 7 HOH A 54 138 138 HOH HOH . L 7 HOH A 55 141 141 HOH HOH . L 7 HOH A 56 143 143 HOH HOH . L 7 HOH A 57 145 145 HOH HOH . L 7 HOH A 58 148 148 HOH HOH . L 7 HOH A 59 149 149 HOH HOH . L 7 HOH A 60 151 151 HOH HOH . L 7 HOH A 61 152 152 HOH HOH . L 7 HOH A 62 153 153 HOH HOH . L 7 HOH A 63 154 154 HOH HOH . L 7 HOH A 64 155 155 HOH HOH . L 7 HOH A 65 156 156 HOH HOH . L 7 HOH A 66 157 157 HOH HOH . L 7 HOH A 67 158 158 HOH HOH . L 7 HOH A 68 159 159 HOH HOH . L 7 HOH A 69 160 160 HOH HOH . M 7 HOH B 1 1 1 HOH HOH . M 7 HOH B 2 3 3 HOH HOH . M 7 HOH B 3 5 5 HOH HOH . M 7 HOH B 4 6 6 HOH HOH . M 7 HOH B 5 7 7 HOH HOH . M 7 HOH B 6 9 9 HOH HOH . M 7 HOH B 7 10 10 HOH HOH . M 7 HOH B 8 12 12 HOH HOH . M 7 HOH B 9 16 16 HOH HOH . M 7 HOH B 10 17 17 HOH HOH . M 7 HOH B 11 18 18 HOH HOH . M 7 HOH B 12 19 19 HOH HOH . M 7 HOH B 13 20 20 HOH HOH . M 7 HOH B 14 22 22 HOH HOH . M 7 HOH B 15 25 25 HOH HOH . M 7 HOH B 16 28 28 HOH HOH . M 7 HOH B 17 29 29 HOH HOH . M 7 HOH B 18 31 31 HOH HOH . M 7 HOH B 19 33 33 HOH HOH . M 7 HOH B 20 34 34 HOH HOH . M 7 HOH B 21 36 36 HOH HOH . M 7 HOH B 22 37 37 HOH HOH . M 7 HOH B 23 38 38 HOH HOH . M 7 HOH B 24 39 39 HOH HOH . M 7 HOH B 25 40 40 HOH HOH . M 7 HOH B 26 42 42 HOH HOH . M 7 HOH B 27 43 43 HOH HOH . M 7 HOH B 28 44 44 HOH HOH . M 7 HOH B 29 45 45 HOH HOH . M 7 HOH B 30 50 50 HOH HOH . M 7 HOH B 31 51 51 HOH HOH . M 7 HOH B 32 52 52 HOH HOH . M 7 HOH B 33 53 53 HOH HOH . M 7 HOH B 34 56 56 HOH HOH . M 7 HOH B 35 58 58 HOH HOH . M 7 HOH B 36 59 59 HOH HOH . M 7 HOH B 37 60 60 HOH HOH . M 7 HOH B 38 62 62 HOH HOH . M 7 HOH B 39 63 63 HOH HOH . M 7 HOH B 40 65 65 HOH HOH . M 7 HOH B 41 66 66 HOH HOH . M 7 HOH B 42 67 67 HOH HOH . M 7 HOH B 43 69 69 HOH HOH . M 7 HOH B 44 70 70 HOH HOH . M 7 HOH B 45 72 72 HOH HOH . M 7 HOH B 46 76 76 HOH HOH . M 7 HOH B 47 78 78 HOH HOH . M 7 HOH B 48 81 81 HOH HOH . M 7 HOH B 49 82 82 HOH HOH . M 7 HOH B 50 83 83 HOH HOH . M 7 HOH B 51 84 84 HOH HOH . M 7 HOH B 52 85 85 HOH HOH . M 7 HOH B 53 87 87 HOH HOH . M 7 HOH B 54 88 88 HOH HOH . M 7 HOH B 55 89 89 HOH HOH . M 7 HOH B 56 90 90 HOH HOH . M 7 HOH B 57 91 91 HOH HOH . M 7 HOH B 58 93 93 HOH HOH . M 7 HOH B 59 96 96 HOH HOH . M 7 HOH B 60 97 97 HOH HOH . M 7 HOH B 61 98 98 HOH HOH . M 7 HOH B 62 99 99 HOH HOH . M 7 HOH B 63 103 103 HOH HOH . M 7 HOH B 64 104 104 HOH HOH . M 7 HOH B 65 105 105 HOH HOH . M 7 HOH B 66 108 108 HOH HOH . M 7 HOH B 67 109 109 HOH HOH . M 7 HOH B 68 110 110 HOH HOH . M 7 HOH B 69 111 111 HOH HOH . M 7 HOH B 70 114 114 HOH HOH . M 7 HOH B 71 116 116 HOH HOH . M 7 HOH B 72 121 121 HOH HOH . M 7 HOH B 73 123 123 HOH HOH . M 7 HOH B 74 125 125 HOH HOH . M 7 HOH B 75 126 126 HOH HOH . M 7 HOH B 76 127 127 HOH HOH . M 7 HOH B 77 128 128 HOH HOH . M 7 HOH B 78 129 129 HOH HOH . M 7 HOH B 79 132 132 HOH HOH . M 7 HOH B 80 133 133 HOH HOH . M 7 HOH B 81 134 134 HOH HOH . M 7 HOH B 82 135 135 HOH HOH . M 7 HOH B 83 136 136 HOH HOH . M 7 HOH B 84 137 137 HOH HOH . M 7 HOH B 85 139 139 HOH HOH . M 7 HOH B 86 140 140 HOH HOH . M 7 HOH B 87 142 142 HOH HOH . M 7 HOH B 88 144 144 HOH HOH . M 7 HOH B 89 146 146 HOH HOH . M 7 HOH B 90 147 147 HOH HOH . M 7 HOH B 91 150 150 HOH HOH . M 7 HOH B 92 161 161 HOH HOH . M 7 HOH B 93 162 162 HOH HOH . M 7 HOH B 94 163 163 HOH HOH . M 7 HOH B 95 164 164 HOH HOH . M 7 HOH B 96 165 165 HOH HOH . M 7 HOH B 97 166 166 HOH HOH . M 7 HOH B 98 167 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL2 HW7 . . . E 4 14.561 -1.651 25.592 1 63.86 ? CL2 HW7 800 A 1 HETATM 2 C C25 HW7 . . . E 4 14.033 -0.356 24.433 1 59.52 ? C25 HW7 800 A 1 HETATM 3 C C24 HW7 . . . E 4 14.738 0.057 23.31 1 56.06 ? C24 HW7 800 A 1 HETATM 4 C C23 HW7 . . . E 4 14.157 1.084 22.535 1 57.05 ? C23 HW7 800 A 1 HETATM 5 F F23 HW7 . . . E 4 14.716 1.521 21.44 1 55.82 ? F23 HW7 800 A 1 HETATM 6 C C22 HW7 . . . E 4 12.969 1.723 22.829 1 56.85 ? C22 HW7 800 A 1 HETATM 7 C C26 HW7 . . . E 4 12.804 0.26 24.728 1 59.66 ? C26 HW7 800 A 1 HETATM 8 C C21 HW7 . . . E 4 12.296 1.296 23.95 1 59.95 ? C21 HW7 800 A 1 HETATM 9 O O14 HW7 . . . E 4 11.108 1.875 24.3 1 64.39 ? O14 HW7 800 A 1 HETATM 10 C C13 HW7 . . . E 4 9.958 1.068 24.437 1 64.08 ? C13 HW7 800 A 1 HETATM 11 C C12 HW7 . . . E 4 8.855 2.082 24.681 1 66.72 ? C12 HW7 800 A 1 HETATM 12 C C11 HW7 . . . E 4 7.59 1.461 24.136 1 69.23 ? C11 HW7 800 A 1 HETATM 13 C C10 HW7 . . . E 4 7.025 0.653 25.271 1 70.05 ? C10 HW7 800 A 1 HETATM 14 O O09 HW7 . . . E 4 6.434 1.654 26.082 1 70.64 ? O09 HW7 800 A 1 HETATM 15 C C3' HW7 . . . E 4 5.377 1.146 26.911 1 73.94 ? C3' HW7 800 A 1 HETATM 16 C C2' HW7 . . . E 4 5.981 0.501 28.156 1 74.14 ? C2' HW7 800 A 1 HETATM 17 C C4' HW7 . . . E 4 4.657 2.387 27.404 1 72.19 ? C4' HW7 800 A 1 HETATM 18 C C5' HW7 . . . E 4 5.574 2.879 28.533 1 71.84 ? C5' HW7 800 A 1 HETATM 19 N N1' HW7 . . . E 4 6.365 1.697 28.889 1 75.93 ? N1' HW7 800 A 1 HETATM 20 C C08 HW7 . . . E 4 4.46 3.438 26.294 1 67.35 ? C08 HW7 800 A 1 HETATM 21 C C06 HW7 . . . E 4 4.064 4.784 26.879 1 64.53 ? C06 HW7 800 A 1 HETATM 22 N N01 HW7 . . . E 4 4.957 5.821 26.885 1 59.94 ? N01 HW7 800 A 1 HETATM 23 C C05 HW7 . . . E 4 2.792 4.955 27.404 1 59.4 ? C05 HW7 800 A 1 HETATM 24 C C04 HW7 . . . E 4 2.421 6.199 27.947 1 62.43 ? C04 HW7 800 A 1 HETATM 25 C C07 HW7 . . . E 4 0.998 6.368 28.511 1 58.5 ? C07 HW7 800 A 1 HETATM 26 C C03 HW7 . . . E 4 3.368 7.242 27.966 1 60.89 ? C03 HW7 800 A 1 HETATM 27 C C02 HW7 . . . E 4 4.671 7.041 27.428 1 60.05 ? C02 HW7 800 A 1 HETATM 28 N N02 HW7 . . . E 4 5.645 8.025 27.415 1 54.38 ? N02 HW7 800 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 915 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #