data_3UFY # _model_server_result.job_id g_wmKXuO838uu_iX4QJ1zw _model_server_result.datetime_utc '2024-10-18 04:21:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ufy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":700}' # _entry.id 3UFY # _exptl.entry_id 3UFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UFY _cell.length_a 58.553 _cell.length_b 64.583 _cell.length_c 96.556 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 246 n n PA O2A NAP sing 247 n n PA O5B NAP sing 248 n n PA O3 NAP sing 249 n n O2A HOA2 NAP sing 250 n n O5B C5B NAP sing 251 n n C5B C4B NAP sing 252 n n C5B H51A NAP sing 253 n n C5B H52A NAP sing 254 n n C4B O4B NAP sing 255 n n C4B C3B NAP sing 256 n n C4B H4B NAP sing 257 n n O4B C1B NAP sing 258 n n C3B O3B NAP sing 259 n n C3B C2B NAP sing 260 n n C3B H3B NAP sing 261 n n O3B HO3A NAP sing 262 n n C2B O2B NAP sing 263 n n C2B C1B NAP sing 264 n n C2B H2B NAP sing 265 n n O2B P2B NAP sing 266 n n C1B N9A NAP sing 267 n n C1B H1B NAP sing 268 n n N9A C8A NAP sing 269 n y N9A C4A NAP sing 270 n y C8A N7A NAP doub 271 n y C8A H8A NAP sing 272 n n N7A C5A NAP sing 273 n y C5A C6A NAP sing 274 n y C5A C4A NAP doub 275 n y C6A N6A NAP sing 276 n n C6A N1A NAP doub 277 n y N6A H61A NAP sing 278 n n N6A H62A NAP sing 279 n n N1A C2A NAP sing 280 n y C2A N3A NAP doub 281 n y C2A H2A NAP sing 282 n n N3A C4A NAP sing 283 n y O3 PN NAP sing 284 n n PN O1N NAP doub 285 n n PN O2N NAP sing 286 n n PN O5D NAP sing 287 n n O5D C5D NAP sing 288 n n C5D C4D NAP sing 289 n n C5D H51N NAP sing 290 n n C5D H52N NAP sing 291 n n C4D O4D NAP sing 292 n n C4D C3D NAP sing 293 n n C4D H4D NAP sing 294 n n O4D C1D NAP sing 295 n n C3D O3D NAP sing 296 n n C3D C2D NAP sing 297 n n C3D H3D NAP sing 298 n n O3D HO3N NAP sing 299 n n C2D O2D NAP sing 300 n n C2D C1D NAP sing 301 n n C2D H2D NAP sing 302 n n O2D HO2N NAP sing 303 n n C1D N1N NAP sing 304 n n C1D H1D NAP sing 305 n n N1N C2N NAP sing 306 n y N1N C6N NAP doub 307 n y C2N C3N NAP doub 308 n y C2N H2N NAP sing 309 n n C3N C7N NAP sing 310 n n C3N C4N NAP sing 311 n y C7N O7N NAP doub 312 n n C7N N7N NAP sing 313 n n N7N H71N NAP sing 314 n n N7N H72N NAP sing 315 n n C4N C5N NAP doub 316 n y C4N H4N NAP sing 317 n n C5N C6N NAP sing 318 n y C5N H5N NAP sing 319 n n C6N H6N NAP sing 320 n n P2B O1X NAP doub 321 n n P2B O2X NAP sing 322 n n P2B O3X NAP sing 323 n n O2X HOP2 NAP sing 324 n n O3X HOP3 NAP sing 325 n n # _atom_sites.entry_id 3UFY _atom_sites.fract_transf_matrix[1][1] 0.017079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 NPX A 1 701 701 NPX RNX . D 4 EDO A 1 702 702 EDO EDO . E 4 EDO A 1 703 703 EDO EDO . F 4 EDO A 1 704 704 EDO EDO . G 4 EDO A 1 705 705 EDO EDO . H 4 EDO A 1 706 706 EDO EDO . I 5 HOH A 1 332 1 HOH HOH . I 5 HOH A 2 333 2 HOH HOH . I 5 HOH A 3 334 3 HOH HOH . I 5 HOH A 4 335 4 HOH HOH . I 5 HOH A 5 336 5 HOH HOH . I 5 HOH A 6 337 6 HOH HOH . I 5 HOH A 7 338 7 HOH HOH . I 5 HOH A 8 339 8 HOH HOH . I 5 HOH A 9 340 9 HOH HOH . I 5 HOH A 10 341 10 HOH HOH . I 5 HOH A 11 342 11 HOH HOH . I 5 HOH A 12 343 12 HOH HOH . I 5 HOH A 13 344 13 HOH HOH . I 5 HOH A 14 345 14 HOH HOH . I 5 HOH A 15 346 15 HOH HOH . I 5 HOH A 16 347 16 HOH HOH . I 5 HOH A 17 348 17 HOH HOH . I 5 HOH A 18 349 18 HOH HOH . I 5 HOH A 19 350 19 HOH HOH . I 5 HOH A 20 351 20 HOH HOH . I 5 HOH A 21 352 21 HOH HOH . I 5 HOH A 22 353 22 HOH HOH . I 5 HOH A 23 354 23 HOH HOH . I 5 HOH A 24 355 24 HOH HOH . I 5 HOH A 25 356 25 HOH HOH . I 5 HOH A 26 357 26 HOH HOH . I 5 HOH A 27 358 27 HOH HOH . I 5 HOH A 28 359 28 HOH HOH . I 5 HOH A 29 360 29 HOH HOH . I 5 HOH A 30 361 30 HOH HOH . I 5 HOH A 31 362 31 HOH HOH . I 5 HOH A 32 363 32 HOH HOH . I 5 HOH A 33 364 33 HOH HOH . I 5 HOH A 34 365 34 HOH HOH . I 5 HOH A 35 366 35 HOH HOH . I 5 HOH A 36 367 36 HOH HOH . I 5 HOH A 37 368 37 HOH HOH . I 5 HOH A 38 369 38 HOH HOH . I 5 HOH A 39 370 39 HOH HOH . I 5 HOH A 40 371 40 HOH HOH . I 5 HOH A 41 372 41 HOH HOH . I 5 HOH A 42 373 42 HOH HOH . I 5 HOH A 43 374 43 HOH HOH . I 5 HOH A 44 375 44 HOH HOH . I 5 HOH A 45 376 45 HOH HOH . I 5 HOH A 46 377 46 HOH HOH . I 5 HOH A 47 378 47 HOH HOH . I 5 HOH A 48 379 48 HOH HOH . I 5 HOH A 49 380 49 HOH HOH . I 5 HOH A 50 381 50 HOH HOH . I 5 HOH A 51 382 51 HOH HOH . I 5 HOH A 52 383 52 HOH HOH . I 5 HOH A 53 384 53 HOH HOH . I 5 HOH A 54 385 54 HOH HOH . I 5 HOH A 55 386 55 HOH HOH . I 5 HOH A 56 387 56 HOH HOH . I 5 HOH A 57 388 58 HOH HOH . I 5 HOH A 58 389 59 HOH HOH . I 5 HOH A 59 390 60 HOH HOH . I 5 HOH A 60 391 61 HOH HOH . I 5 HOH A 61 392 62 HOH HOH . I 5 HOH A 62 393 63 HOH HOH . I 5 HOH A 63 394 64 HOH HOH . I 5 HOH A 64 395 65 HOH HOH . I 5 HOH A 65 396 66 HOH HOH . I 5 HOH A 66 397 67 HOH HOH . I 5 HOH A 67 398 68 HOH HOH . I 5 HOH A 68 399 69 HOH HOH . I 5 HOH A 69 400 70 HOH HOH . I 5 HOH A 70 401 71 HOH HOH . I 5 HOH A 71 402 72 HOH HOH . I 5 HOH A 72 403 73 HOH HOH . I 5 HOH A 73 404 74 HOH HOH . I 5 HOH A 74 405 75 HOH HOH . I 5 HOH A 75 406 76 HOH HOH . I 5 HOH A 76 407 77 HOH HOH . I 5 HOH A 77 408 78 HOH HOH . I 5 HOH A 78 409 79 HOH HOH . I 5 HOH A 79 410 80 HOH HOH . I 5 HOH A 80 411 81 HOH HOH . I 5 HOH A 81 412 82 HOH HOH . I 5 HOH A 82 413 83 HOH HOH . I 5 HOH A 83 414 84 HOH HOH . I 5 HOH A 84 415 85 HOH HOH . I 5 HOH A 85 416 86 HOH HOH . I 5 HOH A 86 417 87 HOH HOH . I 5 HOH A 87 418 88 HOH HOH . I 5 HOH A 88 419 89 HOH HOH . I 5 HOH A 89 420 90 HOH HOH . I 5 HOH A 90 421 91 HOH HOH . I 5 HOH A 91 422 92 HOH HOH . I 5 HOH A 92 423 93 HOH HOH . I 5 HOH A 93 424 94 HOH HOH . I 5 HOH A 94 425 95 HOH HOH . I 5 HOH A 95 426 96 HOH HOH . I 5 HOH A 96 427 97 HOH HOH . I 5 HOH A 97 428 98 HOH HOH . I 5 HOH A 98 429 99 HOH HOH . I 5 HOH A 99 430 100 HOH HOH . I 5 HOH A 100 431 101 HOH HOH . I 5 HOH A 101 432 103 HOH HOH . I 5 HOH A 102 433 104 HOH HOH . I 5 HOH A 103 434 105 HOH HOH . I 5 HOH A 104 435 106 HOH HOH . I 5 HOH A 105 436 107 HOH HOH . I 5 HOH A 106 437 108 HOH HOH . I 5 HOH A 107 438 109 HOH HOH . I 5 HOH A 108 439 110 HOH HOH . I 5 HOH A 109 440 111 HOH HOH . I 5 HOH A 110 441 112 HOH HOH . I 5 HOH A 111 442 113 HOH HOH . I 5 HOH A 112 443 114 HOH HOH . I 5 HOH A 113 444 115 HOH HOH . I 5 HOH A 114 445 116 HOH HOH . I 5 HOH A 115 446 117 HOH HOH . I 5 HOH A 116 447 119 HOH HOH . I 5 HOH A 117 448 120 HOH HOH . I 5 HOH A 118 449 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 -1.927 -3.676 2.958 1 17.74 ? PA NAP 700 A 1 HETATM 2 O O1A NAP . . . B 2 -3.369 -3.371 3.114 1 20.25 ? O1A NAP 700 A 1 HETATM 3 O O2A NAP . . . B 2 -1.439 -5.148 2.855 1 15.67 ? O2A NAP 700 A 1 HETATM 4 O O5B NAP . . . B 2 -1.195 -2.827 1.796 1 17.88 ? O5B NAP 700 A 1 HETATM 5 C C5B NAP . . . B 2 0.134 -3.115 1.352 1 18.67 ? C5B NAP 700 A 1 HETATM 6 C C4B NAP . . . B 2 0.503 -2.001 0.37 1 18.14 ? C4B NAP 700 A 1 HETATM 7 O O4B NAP . . . B 2 -0.492 -2.1 -0.731 1 16.64 ? O4B NAP 700 A 1 HETATM 8 C C3B NAP . . . B 2 0.23 -0.593 0.914 1 18.12 ? C3B NAP 700 A 1 HETATM 9 O O3B NAP . . . B 2 1.391 0.015 1.52 1 18.81 ? O3B NAP 700 A 1 HETATM 10 C C2B NAP . . . B 2 -0.272 0.224 -0.339 1 18.23 ? C2B NAP 700 A 1 HETATM 11 O O2B NAP . . . B 2 0.682 1.152 -0.864 1 20.81 ? O2B NAP 700 A 1 HETATM 12 C C1B NAP . . . B 2 -0.471 -0.828 -1.402 1 20.86 ? C1B NAP 700 A 1 HETATM 13 N N9A NAP . . . B 2 -1.746 -0.73 -2.151 1 23.19 ? N9A NAP 700 A 1 HETATM 14 C C8A NAP . . . B 2 -2.959 -0.401 -1.647 1 22.16 ? C8A NAP 700 A 1 HETATM 15 N N7A NAP . . . B 2 -3.873 -0.447 -2.647 1 22.56 ? N7A NAP 700 A 1 HETATM 16 C C5A NAP . . . B 2 -3.242 -0.781 -3.764 1 22.39 ? C5A NAP 700 A 1 HETATM 17 C C6A NAP . . . B 2 -3.713 -0.942 -5.072 1 25.54 ? C6A NAP 700 A 1 HETATM 18 N N6A NAP . . . B 2 -5.048 -0.753 -5.4 1 22.69 ? N6A NAP 700 A 1 HETATM 19 N N1A NAP . . . B 2 -2.79 -1.265 -6.005 1 21.89 ? N1A NAP 700 A 1 HETATM 20 C C2A NAP . . . B 2 -1.463 -1.433 -5.717 1 27.06 ? C2A NAP 700 A 1 HETATM 21 N N3A NAP . . . B 2 -0.962 -1.31 -4.462 1 23.45 ? N3A NAP 700 A 1 HETATM 22 C C4A NAP . . . B 2 -1.87 -0.965 -3.461 1 24.62 ? C4A NAP 700 A 1 HETATM 23 O O3 NAP . . . B 2 -1.136 -3.006 4.198 1 16.05 ? O3 NAP 700 A 1 HETATM 24 P PN NAP . . . B 2 -0.997 -3.209 5.803 1 18.32 ? PN NAP 700 A 1 HETATM 25 O O1N NAP . . . B 2 -0.76 -1.831 6.313 1 19.19 ? O1N NAP 700 A 1 HETATM 26 O O2N NAP . . . B 2 0.068 -4.246 6.014 1 21.34 ? O2N NAP 700 A 1 HETATM 27 O O5D NAP . . . B 2 -2.414 -3.831 6.267 1 18.84 ? O5D NAP 700 A 1 HETATM 28 C C5D NAP . . . B 2 -3.619 -2.984 6.184 1 16.7 ? C5D NAP 700 A 1 HETATM 29 C C4D NAP . . . B 2 -3.978 -2.49 7.609 1 16 ? C4D NAP 700 A 1 HETATM 30 O O4D NAP . . . B 2 -4.202 -3.613 8.519 1 17.67 ? O4D NAP 700 A 1 HETATM 31 C C3D NAP . . . B 2 -2.921 -1.706 8.323 1 16.62 ? C3D NAP 700 A 1 HETATM 32 O O3D NAP . . . B 2 -2.844 -0.357 7.844 1 18.85 ? O3D NAP 700 A 1 HETATM 33 C C2D NAP . . . B 2 -3.451 -1.694 9.779 1 15.07 ? C2D NAP 700 A 1 HETATM 34 O O2D NAP . . . B 2 -4.682 -0.879 9.78 1 16.6 ? O2D NAP 700 A 1 HETATM 35 C C1D NAP . . . B 2 -3.93 -3.164 9.883 1 15.75 ? C1D NAP 700 A 1 HETATM 36 N N1N NAP . . . B 2 -2.863 -4.106 10.41 1 17.55 ? N1N NAP 700 A 1 HETATM 37 C C2N NAP . . . B 2 -3.12 -4.655 11.631 1 17.31 ? C2N NAP 700 A 1 HETATM 38 C C3N NAP . . . B 2 -2.186 -5.527 12.213 1 18.54 ? C3N NAP 700 A 1 HETATM 39 C C7N NAP . . . B 2 -2.486 -6.174 13.536 1 17.57 ? C7N NAP 700 A 1 HETATM 40 O O7N NAP . . . B 2 -1.549 -6.655 14.185 1 19.22 ? O7N NAP 700 A 1 HETATM 41 N N7N NAP . . . B 2 -3.814 -6.24 13.863 1 20.56 ? N7N NAP 700 A 1 HETATM 42 C C4N NAP . . . B 2 -0.969 -5.721 11.61 1 18.77 ? C4N NAP 700 A 1 HETATM 43 C C5N NAP . . . B 2 -0.694 -5.162 10.346 1 19.07 ? C5N NAP 700 A 1 HETATM 44 C C6N NAP . . . B 2 -1.622 -4.351 9.701 1 18.81 ? C6N NAP 700 A 1 HETATM 45 P P2B NAP . . . B 2 0.239 2.755 -1.03 1 24.67 ? P2B NAP 700 A 1 HETATM 46 O O1X NAP . . . B 2 0.008 3.319 0.373 1 23.41 ? O1X NAP 700 A 1 HETATM 47 O O2X NAP . . . B 2 1.407 3.331 -1.76 1 24.03 ? O2X NAP 700 A 1 HETATM 48 O O3X NAP . . . B 2 -1.045 2.709 -2.002 1 25.81 ? O3X NAP 700 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #