data_3UFY # _model_server_result.job_id Cf0Ogd6oeyKDEC-X4iE_UQ _model_server_result.datetime_utc '2024-11-24 02:35:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ufy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3UFY # _exptl.entry_id 3UFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.259 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-(6-methoxynaphthalen-2-yl)propanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UFY _cell.length_a 58.553 _cell.length_b 64.583 _cell.length_c 96.556 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H14 O3' _chem_comp.formula_weight 230.259 _chem_comp.id NPX _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-(6-methoxynaphthalen-2-yl)propanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (R)-Naproxen # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O2 NPX sing 326 n n C1 C2 NPX sing 327 n y C1 C6 NPX doub 328 n y O2 C12 NPX sing 329 n n C2 C3 NPX doub 330 n y C3 C4 NPX sing 331 n y C4 C5 NPX doub 332 n y C4 C7 NPX sing 333 n y C5 C6 NPX sing 334 n y C5 C13 NPX sing 335 n y C7 C8 NPX doub 336 n y C8 C9 NPX sing 337 n n C8 C11 NPX sing 338 n y C9 C10 NPX sing 339 n n C9 C15 NPX sing 340 n n C13 C11 NPX doub 341 n y O C15 NPX sing 342 n n OXT C15 NPX doub 343 n n C2 H2 NPX sing 344 n n C6 H6 NPX sing 345 n n C12 H121 NPX sing 346 n n C12 H122 NPX sing 347 n n C12 H123 NPX sing 348 n n C3 H3 NPX sing 349 n n C7 H7 NPX sing 350 n n C13 H13 NPX sing 351 n n C9 H9 NPX sing 352 n n C11 H11 NPX sing 353 n n C10 H101 NPX sing 354 n n C10 H102 NPX sing 355 n n C10 H103 NPX sing 356 n n O H NPX sing 357 n n # _atom_sites.entry_id 3UFY _atom_sites.fract_transf_matrix[1][1] 0.017079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 NPX A 1 701 701 NPX RNX . D 4 EDO A 1 702 702 EDO EDO . E 4 EDO A 1 703 703 EDO EDO . F 4 EDO A 1 704 704 EDO EDO . G 4 EDO A 1 705 705 EDO EDO . H 4 EDO A 1 706 706 EDO EDO . I 5 HOH A 1 332 1 HOH HOH . I 5 HOH A 2 333 2 HOH HOH . I 5 HOH A 3 334 3 HOH HOH . I 5 HOH A 4 335 4 HOH HOH . I 5 HOH A 5 336 5 HOH HOH . I 5 HOH A 6 337 6 HOH HOH . I 5 HOH A 7 338 7 HOH HOH . I 5 HOH A 8 339 8 HOH HOH . I 5 HOH A 9 340 9 HOH HOH . I 5 HOH A 10 341 10 HOH HOH . I 5 HOH A 11 342 11 HOH HOH . I 5 HOH A 12 343 12 HOH HOH . I 5 HOH A 13 344 13 HOH HOH . I 5 HOH A 14 345 14 HOH HOH . I 5 HOH A 15 346 15 HOH HOH . I 5 HOH A 16 347 16 HOH HOH . I 5 HOH A 17 348 17 HOH HOH . I 5 HOH A 18 349 18 HOH HOH . I 5 HOH A 19 350 19 HOH HOH . I 5 HOH A 20 351 20 HOH HOH . I 5 HOH A 21 352 21 HOH HOH . I 5 HOH A 22 353 22 HOH HOH . I 5 HOH A 23 354 23 HOH HOH . I 5 HOH A 24 355 24 HOH HOH . I 5 HOH A 25 356 25 HOH HOH . I 5 HOH A 26 357 26 HOH HOH . I 5 HOH A 27 358 27 HOH HOH . I 5 HOH A 28 359 28 HOH HOH . I 5 HOH A 29 360 29 HOH HOH . I 5 HOH A 30 361 30 HOH HOH . I 5 HOH A 31 362 31 HOH HOH . I 5 HOH A 32 363 32 HOH HOH . I 5 HOH A 33 364 33 HOH HOH . I 5 HOH A 34 365 34 HOH HOH . I 5 HOH A 35 366 35 HOH HOH . I 5 HOH A 36 367 36 HOH HOH . I 5 HOH A 37 368 37 HOH HOH . I 5 HOH A 38 369 38 HOH HOH . I 5 HOH A 39 370 39 HOH HOH . I 5 HOH A 40 371 40 HOH HOH . I 5 HOH A 41 372 41 HOH HOH . I 5 HOH A 42 373 42 HOH HOH . I 5 HOH A 43 374 43 HOH HOH . I 5 HOH A 44 375 44 HOH HOH . I 5 HOH A 45 376 45 HOH HOH . I 5 HOH A 46 377 46 HOH HOH . I 5 HOH A 47 378 47 HOH HOH . I 5 HOH A 48 379 48 HOH HOH . I 5 HOH A 49 380 49 HOH HOH . I 5 HOH A 50 381 50 HOH HOH . I 5 HOH A 51 382 51 HOH HOH . I 5 HOH A 52 383 52 HOH HOH . I 5 HOH A 53 384 53 HOH HOH . I 5 HOH A 54 385 54 HOH HOH . I 5 HOH A 55 386 55 HOH HOH . I 5 HOH A 56 387 56 HOH HOH . I 5 HOH A 57 388 58 HOH HOH . I 5 HOH A 58 389 59 HOH HOH . I 5 HOH A 59 390 60 HOH HOH . I 5 HOH A 60 391 61 HOH HOH . I 5 HOH A 61 392 62 HOH HOH . I 5 HOH A 62 393 63 HOH HOH . I 5 HOH A 63 394 64 HOH HOH . I 5 HOH A 64 395 65 HOH HOH . I 5 HOH A 65 396 66 HOH HOH . I 5 HOH A 66 397 67 HOH HOH . I 5 HOH A 67 398 68 HOH HOH . I 5 HOH A 68 399 69 HOH HOH . I 5 HOH A 69 400 70 HOH HOH . I 5 HOH A 70 401 71 HOH HOH . I 5 HOH A 71 402 72 HOH HOH . I 5 HOH A 72 403 73 HOH HOH . I 5 HOH A 73 404 74 HOH HOH . I 5 HOH A 74 405 75 HOH HOH . I 5 HOH A 75 406 76 HOH HOH . I 5 HOH A 76 407 77 HOH HOH . I 5 HOH A 77 408 78 HOH HOH . I 5 HOH A 78 409 79 HOH HOH . I 5 HOH A 79 410 80 HOH HOH . I 5 HOH A 80 411 81 HOH HOH . I 5 HOH A 81 412 82 HOH HOH . I 5 HOH A 82 413 83 HOH HOH . I 5 HOH A 83 414 84 HOH HOH . I 5 HOH A 84 415 85 HOH HOH . I 5 HOH A 85 416 86 HOH HOH . I 5 HOH A 86 417 87 HOH HOH . I 5 HOH A 87 418 88 HOH HOH . I 5 HOH A 88 419 89 HOH HOH . I 5 HOH A 89 420 90 HOH HOH . I 5 HOH A 90 421 91 HOH HOH . I 5 HOH A 91 422 92 HOH HOH . I 5 HOH A 92 423 93 HOH HOH . I 5 HOH A 93 424 94 HOH HOH . I 5 HOH A 94 425 95 HOH HOH . I 5 HOH A 95 426 96 HOH HOH . I 5 HOH A 96 427 97 HOH HOH . I 5 HOH A 97 428 98 HOH HOH . I 5 HOH A 98 429 99 HOH HOH . I 5 HOH A 99 430 100 HOH HOH . I 5 HOH A 100 431 101 HOH HOH . I 5 HOH A 101 432 103 HOH HOH . I 5 HOH A 102 433 104 HOH HOH . I 5 HOH A 103 434 105 HOH HOH . I 5 HOH A 104 435 106 HOH HOH . I 5 HOH A 105 436 107 HOH HOH . I 5 HOH A 106 437 108 HOH HOH . I 5 HOH A 107 438 109 HOH HOH . I 5 HOH A 108 439 110 HOH HOH . I 5 HOH A 109 440 111 HOH HOH . I 5 HOH A 110 441 112 HOH HOH . I 5 HOH A 111 442 113 HOH HOH . I 5 HOH A 112 443 114 HOH HOH . I 5 HOH A 113 444 115 HOH HOH . I 5 HOH A 114 445 116 HOH HOH . I 5 HOH A 115 446 117 HOH HOH . I 5 HOH A 116 447 119 HOH HOH . I 5 HOH A 117 448 120 HOH HOH . I 5 HOH A 118 449 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPX . . . C 3 1.742 -9.966 15.605 1 25.37 ? C1 NPX 701 A 1 HETATM 2 O O2 NPX . . . C 3 1.745 -11.305 15.796 1 28.64 ? O2 NPX 701 A 1 HETATM 3 C C2 NPX . . . C 3 1.457 -9.162 16.684 1 28.45 ? C2 NPX 701 A 1 HETATM 4 C C3 NPX . . . C 3 1.375 -7.79 16.557 1 27.61 ? C3 NPX 701 A 1 HETATM 5 C C4 NPX . . . C 3 1.62 -7.209 15.337 1 27.51 ? C4 NPX 701 A 1 HETATM 6 C C5 NPX . . . C 3 1.947 -8.003 14.245 1 25.78 ? C5 NPX 701 A 1 HETATM 7 C C6 NPX . . . C 3 1.984 -9.388 14.368 1 23.82 ? C6 NPX 701 A 1 HETATM 8 C C7 NPX . . . C 3 1.567 -5.811 15.241 1 28.61 ? C7 NPX 701 A 1 HETATM 9 C C8 NPX . . . C 3 1.797 -5.195 14.026 1 30.82 ? C8 NPX 701 A 1 HETATM 10 C C9 NPX . . . C 3 1.697 -3.707 13.95 1 30.59 ? C9 NPX 701 A 1 HETATM 11 C C10 NPX . . . C 3 2.954 -3.01 13.382 1 35.4 ? C10 NPX 701 A 1 HETATM 12 C C13 NPX . . . C 3 2.212 -7.383 12.993 1 26.63 ? C13 NPX 701 A 1 HETATM 13 C C11 NPX . . . C 3 2.114 -5.986 12.863 1 28.62 ? C11 NPX 701 A 1 HETATM 14 C C12 NPX . . . C 3 2.125 -12.248 14.741 1 30.5 ? C12 NPX 701 A 1 HETATM 15 O O NPX . . . C 3 -0.685 -3.446 13.744 1 27.25 ? O NPX 701 A 1 HETATM 16 O OXT NPX . . . C 3 0.526 -2.744 12.025 1 31.55 ? OXT NPX 701 A 1 HETATM 17 C C15 NPX . . . C 3 0.466 -3.298 13.176 1 30.1 ? C15 NPX 701 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 17 #