data_3UFY # _model_server_result.job_id JB6_QDmrWNaH5WLdXKT8IQ _model_server_result.datetime_utc '2024-11-24 02:51:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ufy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":704}' # _entry.id 3UFY # _exptl.entry_id 3UFY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UFY _cell.length_a 58.553 _cell.length_b 64.583 _cell.length_c 96.556 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UFY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3UFY _atom_sites.fract_transf_matrix[1][1] 0.017079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010357 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 700 700 NAP NAP . C 3 NPX A 1 701 701 NPX RNX . D 4 EDO A 1 702 702 EDO EDO . E 4 EDO A 1 703 703 EDO EDO . F 4 EDO A 1 704 704 EDO EDO . G 4 EDO A 1 705 705 EDO EDO . H 4 EDO A 1 706 706 EDO EDO . I 5 HOH A 1 332 1 HOH HOH . I 5 HOH A 2 333 2 HOH HOH . I 5 HOH A 3 334 3 HOH HOH . I 5 HOH A 4 335 4 HOH HOH . I 5 HOH A 5 336 5 HOH HOH . I 5 HOH A 6 337 6 HOH HOH . I 5 HOH A 7 338 7 HOH HOH . I 5 HOH A 8 339 8 HOH HOH . I 5 HOH A 9 340 9 HOH HOH . I 5 HOH A 10 341 10 HOH HOH . I 5 HOH A 11 342 11 HOH HOH . I 5 HOH A 12 343 12 HOH HOH . I 5 HOH A 13 344 13 HOH HOH . I 5 HOH A 14 345 14 HOH HOH . I 5 HOH A 15 346 15 HOH HOH . I 5 HOH A 16 347 16 HOH HOH . I 5 HOH A 17 348 17 HOH HOH . I 5 HOH A 18 349 18 HOH HOH . I 5 HOH A 19 350 19 HOH HOH . I 5 HOH A 20 351 20 HOH HOH . I 5 HOH A 21 352 21 HOH HOH . I 5 HOH A 22 353 22 HOH HOH . I 5 HOH A 23 354 23 HOH HOH . I 5 HOH A 24 355 24 HOH HOH . I 5 HOH A 25 356 25 HOH HOH . I 5 HOH A 26 357 26 HOH HOH . I 5 HOH A 27 358 27 HOH HOH . I 5 HOH A 28 359 28 HOH HOH . I 5 HOH A 29 360 29 HOH HOH . I 5 HOH A 30 361 30 HOH HOH . I 5 HOH A 31 362 31 HOH HOH . I 5 HOH A 32 363 32 HOH HOH . I 5 HOH A 33 364 33 HOH HOH . I 5 HOH A 34 365 34 HOH HOH . I 5 HOH A 35 366 35 HOH HOH . I 5 HOH A 36 367 36 HOH HOH . I 5 HOH A 37 368 37 HOH HOH . I 5 HOH A 38 369 38 HOH HOH . I 5 HOH A 39 370 39 HOH HOH . I 5 HOH A 40 371 40 HOH HOH . I 5 HOH A 41 372 41 HOH HOH . I 5 HOH A 42 373 42 HOH HOH . I 5 HOH A 43 374 43 HOH HOH . I 5 HOH A 44 375 44 HOH HOH . I 5 HOH A 45 376 45 HOH HOH . I 5 HOH A 46 377 46 HOH HOH . I 5 HOH A 47 378 47 HOH HOH . I 5 HOH A 48 379 48 HOH HOH . I 5 HOH A 49 380 49 HOH HOH . I 5 HOH A 50 381 50 HOH HOH . I 5 HOH A 51 382 51 HOH HOH . I 5 HOH A 52 383 52 HOH HOH . I 5 HOH A 53 384 53 HOH HOH . I 5 HOH A 54 385 54 HOH HOH . I 5 HOH A 55 386 55 HOH HOH . I 5 HOH A 56 387 56 HOH HOH . I 5 HOH A 57 388 58 HOH HOH . I 5 HOH A 58 389 59 HOH HOH . I 5 HOH A 59 390 60 HOH HOH . I 5 HOH A 60 391 61 HOH HOH . I 5 HOH A 61 392 62 HOH HOH . I 5 HOH A 62 393 63 HOH HOH . I 5 HOH A 63 394 64 HOH HOH . I 5 HOH A 64 395 65 HOH HOH . I 5 HOH A 65 396 66 HOH HOH . I 5 HOH A 66 397 67 HOH HOH . I 5 HOH A 67 398 68 HOH HOH . I 5 HOH A 68 399 69 HOH HOH . I 5 HOH A 69 400 70 HOH HOH . I 5 HOH A 70 401 71 HOH HOH . I 5 HOH A 71 402 72 HOH HOH . I 5 HOH A 72 403 73 HOH HOH . I 5 HOH A 73 404 74 HOH HOH . I 5 HOH A 74 405 75 HOH HOH . I 5 HOH A 75 406 76 HOH HOH . I 5 HOH A 76 407 77 HOH HOH . I 5 HOH A 77 408 78 HOH HOH . I 5 HOH A 78 409 79 HOH HOH . I 5 HOH A 79 410 80 HOH HOH . I 5 HOH A 80 411 81 HOH HOH . I 5 HOH A 81 412 82 HOH HOH . I 5 HOH A 82 413 83 HOH HOH . I 5 HOH A 83 414 84 HOH HOH . I 5 HOH A 84 415 85 HOH HOH . I 5 HOH A 85 416 86 HOH HOH . I 5 HOH A 86 417 87 HOH HOH . I 5 HOH A 87 418 88 HOH HOH . I 5 HOH A 88 419 89 HOH HOH . I 5 HOH A 89 420 90 HOH HOH . I 5 HOH A 90 421 91 HOH HOH . I 5 HOH A 91 422 92 HOH HOH . I 5 HOH A 92 423 93 HOH HOH . I 5 HOH A 93 424 94 HOH HOH . I 5 HOH A 94 425 95 HOH HOH . I 5 HOH A 95 426 96 HOH HOH . I 5 HOH A 96 427 97 HOH HOH . I 5 HOH A 97 428 98 HOH HOH . I 5 HOH A 98 429 99 HOH HOH . I 5 HOH A 99 430 100 HOH HOH . I 5 HOH A 100 431 101 HOH HOH . I 5 HOH A 101 432 103 HOH HOH . I 5 HOH A 102 433 104 HOH HOH . I 5 HOH A 103 434 105 HOH HOH . I 5 HOH A 104 435 106 HOH HOH . I 5 HOH A 105 436 107 HOH HOH . I 5 HOH A 106 437 108 HOH HOH . I 5 HOH A 107 438 109 HOH HOH . I 5 HOH A 108 439 110 HOH HOH . I 5 HOH A 109 440 111 HOH HOH . I 5 HOH A 110 441 112 HOH HOH . I 5 HOH A 111 442 113 HOH HOH . I 5 HOH A 112 443 114 HOH HOH . I 5 HOH A 113 444 115 HOH HOH . I 5 HOH A 114 445 116 HOH HOH . I 5 HOH A 115 446 117 HOH HOH . I 5 HOH A 116 447 119 HOH HOH . I 5 HOH A 117 448 120 HOH HOH . I 5 HOH A 118 449 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 4 6.099 -4.051 16.512 1 42.6 ? C1 EDO 704 A 1 HETATM 2 O O1 EDO . . . F 4 5.959 -2.812 17.213 1 40.87 ? O1 EDO 704 A 1 HETATM 3 C C2 EDO . . . F 4 5.312 -5.12 17.254 1 43.77 ? C2 EDO 704 A 1 HETATM 4 O O2 EDO . . . F 4 6.001 -5.331 18.51 1 46.31 ? O2 EDO 704 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 4 #