data_3UGB # _model_server_result.job_id 2s-uhIkEGDMdyu6FTAZK0g _model_server_result.datetime_utc '2024-12-27 02:34:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ugb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3UGB # _exptl.entry_id 3UGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.07 _cell.angle_gamma 90 _cell.entry_id 3UGB _cell.length_a 42.027 _cell.length_b 52.51 _cell.length_c 53.114 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_454 -x-1,y+1/2,-z-1 -1 0 0 0 1 0 0 0 -1 -31.82868 26.255 -52.125726 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 85 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 85 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 76 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 76 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.434 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3UGB _atom_sites.fract_transf_matrix[1][1] 0.023794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004655 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019044 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019184 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 201 1 GOL GOL . D 3 GOL A 1 202 2 GOL GOL . E 4 HOH A 1 301 1 HOH HOH . E 4 HOH A 2 302 2 HOH HOH . E 4 HOH A 3 303 3 HOH HOH . E 4 HOH A 4 304 4 HOH HOH . E 4 HOH A 5 305 5 HOH HOH . E 4 HOH A 6 306 6 HOH HOH . E 4 HOH A 7 307 7 HOH HOH . E 4 HOH A 8 308 8 HOH HOH . E 4 HOH A 9 309 9 HOH HOH . E 4 HOH A 10 310 10 HOH HOH . E 4 HOH A 11 311 12 HOH HOH . E 4 HOH A 12 312 13 HOH HOH . E 4 HOH A 13 313 14 HOH HOH . E 4 HOH A 14 314 15 HOH HOH . E 4 HOH A 15 315 16 HOH HOH . E 4 HOH A 16 316 22 HOH HOH . E 4 HOH A 17 317 23 HOH HOH . E 4 HOH A 18 318 24 HOH HOH . E 4 HOH A 19 319 25 HOH HOH . E 4 HOH A 20 320 26 HOH HOH . E 4 HOH A 21 321 27 HOH HOH . E 4 HOH A 22 322 28 HOH HOH . E 4 HOH A 23 323 29 HOH HOH . E 4 HOH A 24 324 34 HOH HOH . E 4 HOH A 25 325 35 HOH HOH . E 4 HOH A 26 326 37 HOH HOH . E 4 HOH A 27 327 40 HOH HOH . E 4 HOH A 28 328 41 HOH HOH . E 4 HOH A 29 329 42 HOH HOH . E 4 HOH A 30 330 43 HOH HOH . E 4 HOH A 31 331 44 HOH HOH . E 4 HOH A 32 332 45 HOH HOH . E 4 HOH A 33 333 46 HOH HOH . E 4 HOH A 34 334 47 HOH HOH . E 4 HOH A 35 335 48 HOH HOH . E 4 HOH A 36 336 49 HOH HOH . E 4 HOH A 37 337 50 HOH HOH . E 4 HOH A 38 338 53 HOH HOH . E 4 HOH A 39 339 54 HOH HOH . E 4 HOH A 40 340 55 HOH HOH . E 4 HOH A 41 341 57 HOH HOH . E 4 HOH A 42 342 59 HOH HOH . E 4 HOH A 43 343 60 HOH HOH . E 4 HOH A 44 344 61 HOH HOH . E 4 HOH A 45 345 63 HOH HOH . E 4 HOH A 46 346 66 HOH HOH . E 4 HOH A 47 347 67 HOH HOH . E 4 HOH A 48 348 68 HOH HOH . E 4 HOH A 49 349 69 HOH HOH . E 4 HOH A 50 350 70 HOH HOH . E 4 HOH A 51 351 71 HOH HOH . E 4 HOH A 52 352 72 HOH HOH . E 4 HOH A 53 353 73 HOH HOH . E 4 HOH A 54 354 75 HOH HOH . E 4 HOH A 55 355 76 HOH HOH . E 4 HOH A 56 356 77 HOH HOH . E 4 HOH A 57 357 78 HOH HOH . E 4 HOH A 58 358 79 HOH HOH . E 4 HOH A 59 359 80 HOH HOH . E 4 HOH A 60 360 81 HOH HOH . E 4 HOH A 61 361 82 HOH HOH . E 4 HOH A 62 362 83 HOH HOH . E 4 HOH A 63 363 84 HOH HOH . E 4 HOH A 64 364 85 HOH HOH . E 4 HOH A 65 365 86 HOH HOH . E 4 HOH A 66 366 87 HOH HOH . E 4 HOH A 67 367 88 HOH HOH . E 4 HOH A 68 368 89 HOH HOH . E 4 HOH A 69 369 90 HOH HOH . E 4 HOH A 70 370 91 HOH HOH . E 4 HOH A 71 371 95 HOH HOH . E 4 HOH A 72 372 101 HOH HOH . E 4 HOH A 73 373 105 HOH HOH . E 4 HOH A 74 374 107 HOH HOH . E 4 HOH A 75 375 108 HOH HOH . E 4 HOH A 76 376 109 HOH HOH . E 4 HOH A 77 377 110 HOH HOH . E 4 HOH A 78 378 111 HOH HOH . E 4 HOH A 79 379 112 HOH HOH . E 4 HOH A 80 380 113 HOH HOH . E 4 HOH A 81 381 115 HOH HOH . E 4 HOH A 82 382 116 HOH HOH . E 4 HOH A 83 383 120 HOH HOH . E 4 HOH A 84 384 121 HOH HOH . E 4 HOH A 85 385 122 HOH HOH . E 4 HOH A 86 386 124 HOH HOH . E 4 HOH A 87 387 126 HOH HOH . E 4 HOH A 88 388 127 HOH HOH . E 4 HOH A 89 389 130 HOH HOH . E 4 HOH A 90 390 131 HOH HOH . F 4 HOH B 1 101 17 HOH HOH . F 4 HOH B 2 102 18 HOH HOH . F 4 HOH B 3 103 19 HOH HOH . F 4 HOH B 4 104 20 HOH HOH . F 4 HOH B 5 105 21 HOH HOH . F 4 HOH B 6 106 30 HOH HOH . F 4 HOH B 7 107 31 HOH HOH . F 4 HOH B 8 108 32 HOH HOH . F 4 HOH B 9 109 33 HOH HOH . F 4 HOH B 10 110 36 HOH HOH . F 4 HOH B 11 111 38 HOH HOH . F 4 HOH B 12 112 39 HOH HOH . F 4 HOH B 13 113 51 HOH HOH . F 4 HOH B 14 114 52 HOH HOH . F 4 HOH B 15 115 56 HOH HOH . F 4 HOH B 16 116 58 HOH HOH . F 4 HOH B 17 117 62 HOH HOH . F 4 HOH B 18 118 64 HOH HOH . F 4 HOH B 19 119 65 HOH HOH . F 4 HOH B 20 120 74 HOH HOH . F 4 HOH B 21 121 92 HOH HOH . F 4 HOH B 22 122 96 HOH HOH . F 4 HOH B 23 123 97 HOH HOH . F 4 HOH B 24 124 98 HOH HOH . F 4 HOH B 25 125 99 HOH HOH . F 4 HOH B 26 126 100 HOH HOH . F 4 HOH B 27 127 102 HOH HOH . F 4 HOH B 28 128 103 HOH HOH . F 4 HOH B 29 129 104 HOH HOH . F 4 HOH B 30 130 106 HOH HOH . F 4 HOH B 31 131 114 HOH HOH . F 4 HOH B 32 132 117 HOH HOH . F 4 HOH B 33 133 118 HOH HOH . F 4 HOH B 34 134 119 HOH HOH . F 4 HOH B 35 135 123 HOH HOH . F 4 HOH B 36 136 125 HOH HOH . F 4 HOH B 37 137 128 HOH HOH . F 4 HOH B 38 138 129 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -4.153 16.613 -33.874 1 67.85 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 3 -5.114 15.559 -33.945 1 64.48 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 3 -2.76 16.012 -33.682 1 70.75 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 3 -2.806 15.038 -32.638 1 68.45 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 3 -1.773 17.119 -33.309 1 63.7 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 3 -0.452 16.581 -33.253 1 54.75 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 6 #