data_3UGD
#
_model_server_result.job_id            GT6VN-5sl4SqWm4_jxzv6w 
_model_server_result.datetime_utc      '2025-07-30 20:09:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ugd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":288}' 
#
_entry.id    3UGD 
#
_exptl.entry_id    3UGD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.21 
_cell.angle_gamma         90 
_cell.entry_id            3UGD 
_cell.length_a            43.946 
_cell.length_b            32.504 
_cell.length_c            49.677 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UGD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C ZN ZN . A ZN 1 1_555 A SG CYS 23 A CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? 
metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A SG CYS 26 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A ND1 HIS 48 A HIS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A SG CYS 51 A CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc5 D ZN ZN . A ZN 2 1_555 A ND1 HIS 10 A HIS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc6 D ZN ZN . A ZN 2 1_555 A SG CYS 40 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
metalc ? metalc7 D ZN ZN . A ZN 2 1_555 A SG CYS 43 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 D ZN ZN . A ZN 2 1_555 A SG CYS 59 A CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc9 I ZN ZN . B ZN 3 1_555 B SG CYS 23 B CYS 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? 
metalc ? metalc10 I ZN ZN . B ZN 3 1_555 B SG CYS 26 B CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc11 I ZN ZN . B ZN 3 1_555 B ND1 HIS 48 B HIS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc12 I ZN ZN . B ZN 3 1_555 B SG CYS 51 B CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc13 J ZN ZN . B ZN 4 1_555 B ND1 HIS 10 B HIS 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc14 J ZN ZN . B ZN 4 1_555 B SG CYS 40 B CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc15 J ZN ZN . B ZN 4 1_555 B SG CYS 43 B CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc16 J ZN ZN . B ZN 4 1_555 B SG CYS 59 B CYS 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 269 n n 
P O2 PO4 sing 270 n n 
P O3 PO4 sing 271 n n 
P O4 PO4 sing 272 n n 
#
_atom_sites.entry_id                     3UGD 
_atom_sites.fract_transf_matrix[1][1]    0.022755 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001676 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030765 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020185 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 1 1 ZN ZN . 
D 2 ZN A 1 2 2 ZN ZN . 
E 3 EDO A 1 287 1 EDO EDO . 
F 4 PO4 A 1 288 1 PO4 PO4 . 
G 4 PO4 A 1 3 3 PO4 PO4 . 
H 4 PO4 A 1 6 6 PO4 PO4 . 
I 2 ZN B 1 3 3 ZN ZN . 
J 2 ZN B 1 4 4 ZN ZN . 
K 3 EDO B 1 2 2 EDO EDO . 
L 4 PO4 B 1 287 2 PO4 PO4 . 
M 4 PO4 B 1 288 4 PO4 PO4 . 
N 4 PO4 B 1 5 5 PO4 PO4 . 
O 5 HOH A 1 4 4 HOH HOH . 
O 5 HOH A 2 11 11 HOH HOH . 
O 5 HOH A 3 12 12 HOH HOH . 
O 5 HOH A 4 14 14 HOH HOH . 
O 5 HOH A 5 15 15 HOH HOH . 
O 5 HOH A 6 16 16 HOH HOH . 
O 5 HOH A 7 17 17 HOH HOH . 
O 5 HOH A 8 18 18 HOH HOH . 
O 5 HOH A 9 19 19 HOH HOH . 
O 5 HOH A 10 22 22 HOH HOH . 
O 5 HOH A 11 24 24 HOH HOH . 
O 5 HOH A 12 25 25 HOH HOH . 
O 5 HOH A 13 29 29 HOH HOH . 
O 5 HOH A 14 32 32 HOH HOH . 
O 5 HOH A 15 38 38 HOH HOH . 
O 5 HOH A 16 41 41 HOH HOH . 
O 5 HOH A 17 44 44 HOH HOH . 
O 5 HOH A 18 46 46 HOH HOH . 
O 5 HOH A 19 47 47 HOH HOH . 
O 5 HOH A 20 49 49 HOH HOH . 
O 5 HOH A 21 54 54 HOH HOH . 
O 5 HOH A 22 55 55 HOH HOH . 
O 5 HOH A 23 57 57 HOH HOH . 
O 5 HOH A 24 60 60 HOH HOH . 
O 5 HOH A 25 62 62 HOH HOH . 
O 5 HOH A 26 63 63 HOH HOH . 
O 5 HOH A 27 64 64 HOH HOH . 
O 5 HOH A 28 65 65 HOH HOH . 
O 5 HOH A 29 66 66 HOH HOH . 
O 5 HOH A 30 68 68 HOH HOH . 
O 5 HOH A 31 69 69 HOH HOH . 
O 5 HOH A 32 70 70 HOH HOH . 
O 5 HOH A 33 72 72 HOH HOH . 
O 5 HOH A 34 73 73 HOH HOH . 
O 5 HOH A 35 74 74 HOH HOH . 
O 5 HOH A 36 75 75 HOH HOH . 
O 5 HOH A 37 76 76 HOH HOH . 
O 5 HOH A 38 77 77 HOH HOH . 
O 5 HOH A 39 79 79 HOH HOH . 
O 5 HOH A 40 81 81 HOH HOH . 
O 5 HOH A 41 83 83 HOH HOH . 
O 5 HOH A 42 85 85 HOH HOH . 
O 5 HOH A 43 90 90 HOH HOH . 
O 5 HOH A 44 92 92 HOH HOH . 
O 5 HOH A 45 95 95 HOH HOH . 
O 5 HOH A 46 99 99 HOH HOH . 
O 5 HOH A 47 103 103 HOH HOH . 
O 5 HOH A 48 104 104 HOH HOH . 
O 5 HOH A 49 105 105 HOH HOH . 
O 5 HOH A 50 106 106 HOH HOH . 
O 5 HOH A 51 107 107 HOH HOH . 
O 5 HOH A 52 112 112 HOH HOH . 
O 5 HOH A 53 115 115 HOH HOH . 
O 5 HOH A 54 119 119 HOH HOH . 
O 5 HOH A 55 121 121 HOH HOH . 
O 5 HOH A 56 124 124 HOH HOH . 
O 5 HOH A 57 125 125 HOH HOH . 
O 5 HOH A 58 127 127 HOH HOH . 
O 5 HOH A 59 128 128 HOH HOH . 
O 5 HOH A 60 130 130 HOH HOH . 
O 5 HOH A 61 132 132 HOH HOH . 
O 5 HOH A 62 134 134 HOH HOH . 
O 5 HOH A 63 135 135 HOH HOH . 
O 5 HOH A 64 136 136 HOH HOH . 
O 5 HOH A 65 138 138 HOH HOH . 
O 5 HOH A 66 139 139 HOH HOH . 
O 5 HOH A 67 140 140 HOH HOH . 
O 5 HOH A 68 143 143 HOH HOH . 
O 5 HOH A 69 144 144 HOH HOH . 
O 5 HOH A 70 145 145 HOH HOH . 
O 5 HOH A 71 147 147 HOH HOH . 
O 5 HOH A 72 149 149 HOH HOH . 
O 5 HOH A 73 152 152 HOH HOH . 
O 5 HOH A 74 155 155 HOH HOH . 
O 5 HOH A 75 157 157 HOH HOH . 
O 5 HOH A 76 158 158 HOH HOH . 
O 5 HOH A 77 159 159 HOH HOH . 
O 5 HOH A 78 160 160 HOH HOH . 
O 5 HOH A 79 161 161 HOH HOH . 
O 5 HOH A 80 162 162 HOH HOH . 
O 5 HOH A 81 163 163 HOH HOH . 
O 5 HOH A 82 167 167 HOH HOH . 
O 5 HOH A 83 169 169 HOH HOH . 
O 5 HOH A 84 171 171 HOH HOH . 
O 5 HOH A 85 172 172 HOH HOH . 
O 5 HOH A 86 173 173 HOH HOH . 
O 5 HOH A 87 174 174 HOH HOH . 
O 5 HOH A 88 175 175 HOH HOH . 
O 5 HOH A 89 177 177 HOH HOH . 
O 5 HOH A 90 180 180 HOH HOH . 
O 5 HOH A 91 182 182 HOH HOH . 
O 5 HOH A 92 184 184 HOH HOH . 
O 5 HOH A 93 185 185 HOH HOH . 
P 5 HOH B 1 1 1 HOH HOH . 
P 5 HOH B 2 6 6 HOH HOH . 
P 5 HOH B 3 7 7 HOH HOH . 
P 5 HOH B 4 8 8 HOH HOH . 
P 5 HOH B 5 9 9 HOH HOH . 
P 5 HOH B 6 10 10 HOH HOH . 
P 5 HOH B 7 13 13 HOH HOH . 
P 5 HOH B 8 20 20 HOH HOH . 
P 5 HOH B 9 21 21 HOH HOH . 
P 5 HOH B 10 23 23 HOH HOH . 
P 5 HOH B 11 26 26 HOH HOH . 
P 5 HOH B 12 27 27 HOH HOH . 
P 5 HOH B 13 28 28 HOH HOH . 
P 5 HOH B 14 30 30 HOH HOH . 
P 5 HOH B 15 31 31 HOH HOH . 
P 5 HOH B 16 33 33 HOH HOH . 
P 5 HOH B 17 34 34 HOH HOH . 
P 5 HOH B 18 35 35 HOH HOH . 
P 5 HOH B 19 36 36 HOH HOH . 
P 5 HOH B 20 37 37 HOH HOH . 
P 5 HOH B 21 39 39 HOH HOH . 
P 5 HOH B 22 40 40 HOH HOH . 
P 5 HOH B 23 42 42 HOH HOH . 
P 5 HOH B 24 43 43 HOH HOH . 
P 5 HOH B 25 45 45 HOH HOH . 
P 5 HOH B 26 48 48 HOH HOH . 
P 5 HOH B 27 50 50 HOH HOH . 
P 5 HOH B 28 51 51 HOH HOH . 
P 5 HOH B 29 52 52 HOH HOH . 
P 5 HOH B 30 53 53 HOH HOH . 
P 5 HOH B 31 56 56 HOH HOH . 
P 5 HOH B 32 58 58 HOH HOH . 
P 5 HOH B 33 59 59 HOH HOH . 
P 5 HOH B 34 61 61 HOH HOH . 
P 5 HOH B 35 67 67 HOH HOH . 
P 5 HOH B 36 71 71 HOH HOH . 
P 5 HOH B 37 78 78 HOH HOH . 
P 5 HOH B 38 80 80 HOH HOH . 
P 5 HOH B 39 82 82 HOH HOH . 
P 5 HOH B 40 84 84 HOH HOH . 
P 5 HOH B 41 86 86 HOH HOH . 
P 5 HOH B 42 87 87 HOH HOH . 
P 5 HOH B 43 88 88 HOH HOH . 
P 5 HOH B 44 89 89 HOH HOH . 
P 5 HOH B 45 91 91 HOH HOH . 
P 5 HOH B 46 93 93 HOH HOH . 
P 5 HOH B 47 94 94 HOH HOH . 
P 5 HOH B 48 96 96 HOH HOH . 
P 5 HOH B 49 97 97 HOH HOH . 
P 5 HOH B 50 98 98 HOH HOH . 
P 5 HOH B 51 100 100 HOH HOH . 
P 5 HOH B 52 101 101 HOH HOH . 
P 5 HOH B 53 102 102 HOH HOH . 
P 5 HOH B 54 108 108 HOH HOH . 
P 5 HOH B 55 109 109 HOH HOH . 
P 5 HOH B 56 110 110 HOH HOH . 
P 5 HOH B 57 111 111 HOH HOH . 
P 5 HOH B 58 113 113 HOH HOH . 
P 5 HOH B 59 114 114 HOH HOH . 
P 5 HOH B 60 116 116 HOH HOH . 
P 5 HOH B 61 117 117 HOH HOH . 
P 5 HOH B 62 118 118 HOH HOH . 
P 5 HOH B 63 120 120 HOH HOH . 
P 5 HOH B 64 122 122 HOH HOH . 
P 5 HOH B 65 123 123 HOH HOH . 
P 5 HOH B 66 126 126 HOH HOH . 
P 5 HOH B 67 129 129 HOH HOH . 
P 5 HOH B 68 131 131 HOH HOH . 
P 5 HOH B 69 133 133 HOH HOH . 
P 5 HOH B 70 137 137 HOH HOH . 
P 5 HOH B 71 141 141 HOH HOH . 
P 5 HOH B 72 142 142 HOH HOH . 
P 5 HOH B 73 146 146 HOH HOH . 
P 5 HOH B 74 148 148 HOH HOH . 
P 5 HOH B 75 150 150 HOH HOH . 
P 5 HOH B 76 151 151 HOH HOH . 
P 5 HOH B 77 153 153 HOH HOH . 
P 5 HOH B 78 154 154 HOH HOH . 
P 5 HOH B 79 156 156 HOH HOH . 
P 5 HOH B 80 164 164 HOH HOH . 
P 5 HOH B 81 165 165 HOH HOH . 
P 5 HOH B 82 166 166 HOH HOH . 
P 5 HOH B 83 168 168 HOH HOH . 
P 5 HOH B 84 170 170 HOH HOH . 
P 5 HOH B 85 176 176 HOH HOH . 
P 5 HOH B 86 178 178 HOH HOH . 
P 5 HOH B 87 179 179 HOH HOH . 
P 5 HOH B 88 181 181 HOH HOH . 
P 5 HOH B 89 183 183 HOH HOH . 
P 5 HOH B 90 289 2 HOH HOH . 
P 5 HOH B 91 290 3 HOH HOH . 
P 5 HOH B 92 291 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . F 4 12.327 -9.139 16.115 1 25.47 ? P PO4 288 A 1 
HETATM 2 O O1 PO4 . . . F 4 13.759 -8.741 15.869 1 25.28 ? O1 PO4 288 A 1 
HETATM 3 O O2 PO4 . . . F 4 11.811 -9.767 14.838 1 26.62 ? O2 PO4 288 A 1 
HETATM 4 O O3 PO4 . . . F 4 12.296 -10.146 17.243 1 26.84 ? O3 PO4 288 A 1 
HETATM 5 O O4 PO4 . . . F 4 11.488 -7.939 16.464 1 24.75 ? O4 PO4 288 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           1618 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           5 
#