data_3UGG # _model_server_result.job_id Fc_7DfwRnZUdZWCJOZGfzw _model_server_result.datetime_utc '2024-12-21 16:26:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ugg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":561}' # _entry.id 3UGG # _exptl.entry_id 3UGG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UGG _cell.length_a 88.42 _cell.length_b 123.8 _cell.length_c 146.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UGG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,K,M,N,Q 1 1 B,G,H,I,J,L,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 N N N ? 8 P N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 4 ? 3 4 1 FUC NAG C1 O1 . O3 HO3 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 5 2 1 FUC NAG C1 O1 . O3 HO3 . sing 8 ? 5 3 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 6 1 2 GLC FRU C1 O1 . O2 HO2 . sing 10 ? 6 3 2 FRU FRU C2 O2 . O1 HO1 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 1 NAG 2 n C FUC 2 C 2 FUC C 2 FUC 3 n D NAG 1 D 1 NAG C 21 NAG 3 n D NAG 2 D 2 NAG C 22 NAG 3 n D BMA 3 D 3 BMA C 23 BMA 3 n D FUC 4 D 4 FUC C 24 FUC 4 n E NAG 1 E 1 NAG C 31 NAG 4 n E NAG 2 E 2 NAG C 32 NAG 4 n E BMA 3 E 3 BMA C 33 BMA 3 n F NAG 1 F 1 NAG C 61 NAG 3 n F NAG 2 F 2 NAG C 62 NAG 3 n F BMA 3 F 3 BMA C 63 BMA 3 n F FUC 4 F 4 FUC C 64 FUC 4 n G NAG 1 G 1 NAG C 11 NAG 4 n G NAG 2 G 2 NAG C 12 NAG 4 n G BMA 3 G 3 BMA C 13 BMA 5 n H NAG 1 H 1 NAG C 41 NAG 5 n H FUC 2 H 2 FUC C 43 FUC 5 n H NAG 3 H 3 NAG C 42 NAG 3 n I NAG 1 I 1 NAG C 51 NAG 3 n I NAG 2 I 2 NAG C 52 NAG 3 n I BMA 3 I 3 BMA C 53 BMA 3 n I FUC 4 I 4 FUC C 55 FUC 3 n J NAG 1 J 1 NAG C 71 NAG 3 n J NAG 2 J 2 NAG C 72 NAG 3 n J BMA 3 J 3 BMA C 73 BMA 3 n J FUC 4 J 4 FUC C 74 FUC 6 n K GLC 1 K 1 GLC A 800 DQR 6 n K FRU 2 K 2 FRU A 800 DQR 6 n K FRU 3 K 3 FRU A 800 DQR 6 n L GLC 1 L 1 GLC B 800 DQR 6 n L FRU 2 L 2 FRU B 800 DQR 6 n L FRU 3 L 3 FRU B 800 DQR # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 A CYS 401 1_555 A SG CYS 449 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 B SG CYS 401 B CYS 401 1_555 B SG CYS 449 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 A ND2 ASN 178 A ASN 178 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 400 A ASN 400 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale4 A ND2 ASN 521 A ASN 521 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale5 B ND2 ASN 59 B ASN 59 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale6 B ND2 ASN 178 B ASN 178 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale7 B ND2 ASN 400 B ASN 400 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 B ND2 ASN 521 B ASN 521 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 C O3 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? covale ? covale10 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale11 D O3 NAG . D NAG 1 1_555 D C1 FUC . D FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale14 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale15 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale16 F O3 NAG . F NAG 1 1_555 F C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale17 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale18 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale19 G O4 NAG . G NAG 2 1_555 G C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale20 H O3 NAG . H NAG 1 1_555 H C1 FUC . H FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale21 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale22 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale23 I O3 NAG . I NAG 1 1_555 I C1 FUC . I FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale24 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale25 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale26 J O3 NAG . J NAG 1 1_555 J C1 FUC . J FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.456 ? covale ? covale27 J O4 NAG . J NAG 2 1_555 J C1 BMA . J BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale28 K C1 GLC . K GLC 1 1_555 K O2 FRU . K FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 sing covale ? covale29 K O1 FRU . K FRU 2 1_555 K C2 FRU . K FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 sing covale ? covale30 L C1 GLC . L GLC 1 1_555 L O2 FRU . L FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 sing covale ? covale31 L O1 FRU . L FRU 2 1_555 L C2 FRU . L FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 224 n n C1 C2 GOL sing 225 n n C1 H11 GOL sing 226 n n C1 H12 GOL sing 227 n n O1 HO1 GOL sing 228 n n C2 O2 GOL sing 229 n n C2 C3 GOL sing 230 n n C2 H2 GOL sing 231 n n O2 HO2 GOL sing 232 n n C3 O3 GOL sing 233 n n C3 H31 GOL sing 234 n n C3 H32 GOL sing 235 n n O3 HO3 GOL sing 236 n n # _atom_sites.entry_id 3UGG _atom_sites.fract_transf_matrix[1][1] 0.01131 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008078 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 7 SO4 A 1 560 80 SO4 SO4 . N 8 GOL A 1 561 83 GOL GOL . O 7 SO4 B 1 561 81 SO4 SO4 . P 8 GOL B 1 562 82 GOL GOL . Q 9 HOH A 1 562 1 HOH HOH . Q 9 HOH A 2 563 4 HOH HOH . Q 9 HOH A 3 564 5 HOH HOH . Q 9 HOH A 4 565 6 HOH HOH . Q 9 HOH A 5 566 7 HOH HOH . Q 9 HOH A 6 567 8 HOH HOH . Q 9 HOH A 7 568 12 HOH HOH . Q 9 HOH A 8 569 13 HOH HOH . Q 9 HOH A 9 570 15 HOH HOH . Q 9 HOH A 10 571 16 HOH HOH . Q 9 HOH A 11 572 17 HOH HOH . Q 9 HOH A 12 573 18 HOH HOH . Q 9 HOH A 13 574 19 HOH HOH . Q 9 HOH A 14 575 20 HOH HOH . Q 9 HOH A 15 576 26 HOH HOH . Q 9 HOH A 16 577 28 HOH HOH . Q 9 HOH A 17 578 29 HOH HOH . Q 9 HOH A 18 579 31 HOH HOH . R 9 HOH B 1 563 2 HOH HOH . R 9 HOH B 2 564 3 HOH HOH . R 9 HOH B 3 565 9 HOH HOH . R 9 HOH B 4 566 10 HOH HOH . R 9 HOH B 5 567 11 HOH HOH . R 9 HOH B 6 568 14 HOH HOH . R 9 HOH B 7 569 21 HOH HOH . R 9 HOH B 8 570 22 HOH HOH . R 9 HOH B 9 571 23 HOH HOH . R 9 HOH B 10 572 24 HOH HOH . R 9 HOH B 11 573 25 HOH HOH . R 9 HOH B 12 574 27 HOH HOH . R 9 HOH B 13 575 30 HOH HOH . R 9 HOH B 14 576 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . N 8 40.468 -10.449 -16.399 1 31.21 ? C1 GOL 561 A 1 HETATM 2 O O1 GOL . . . N 8 39.659 -10.572 -17.544 1 30.1 ? O1 GOL 561 A 1 HETATM 3 C C2 GOL . . . N 8 39.636 -10.103 -15.165 1 31.55 ? C2 GOL 561 A 1 HETATM 4 O O2 GOL . . . N 8 38.938 -8.896 -15.388 1 31.03 ? O2 GOL 561 A 1 HETATM 5 C C3 GOL . . . N 8 40.544 -9.944 -13.942 1 31.56 ? C3 GOL 561 A 1 HETATM 6 O O3 GOL . . . N 8 40.986 -11.196 -13.457 1 31.05 ? O3 GOL 561 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #