data_3UGH # _model_server_result.job_id RyMwAF4qyxZPHFIjYZJ6QA _model_server_result.datetime_utc '2025-02-05 05:51:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ugh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":562}' # _entry.id 3UGH # _exptl.entry_id 3UGH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UGH _cell.length_a 88.291 _cell.length_b 123.894 _cell.length_c 146.699 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UGH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,K,L,M 1 1 B,F,G,H,I,J,N,O 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 M N N ? 9 O N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide 6 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 2 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 5 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 4 4 3 XYS BMA C1 O1 . O2 HO2 . sing 8 ? 4 5 3 MAN BMA C1 O1 . O3 HO3 . sing 9 ? 4 6 3 MAN BMA C1 O1 . O6 HO6 . sing 10 ? 4 7 1 FUC NAG C1 O1 . O3 HO3 . sing 11 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 12 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 13 ? 5 4 3 MAN BMA C1 O1 . O6 HO6 . sing 14 ? 5 5 1 FUC NAG C1 O1 . O3 HO3 . sing 15 ? 6 1 2 GLC FRU C1 O1 . O2 HO2 . sing 16 ? 6 3 2 FRU FRU C2 O2 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 21 NAG 2 n C FUC 2 C 2 FUC C 23 FUC 2 n C NAG 3 C 3 NAG C 22 NAG 3 n D NAG 1 D 1 NAG C 31 NAG 3 n D NAG 2 D 2 NAG C 32 NAG 3 n D BMA 3 D 3 BMA C 33 BMA 4 n E NAG 1 E 1 NAG C 61 NAG 4 n E NAG 2 E 2 NAG C 62 NAG 4 n E BMA 3 E 3 BMA C 63 BMA 4 n E XYS 4 E 4 XYS C 66 XYS 4 n E MAN 5 E 5 MAN C 64 MAN 4 n E MAN 6 E 6 MAN C 67 MAN 4 n E FUC 7 E 7 FUC C 65 FUC 3 n F NAG 1 F 1 NAG C 11 NAG 3 n F NAG 2 F 2 NAG C 12 NAG 3 n F BMA 3 F 3 BMA C 13 BMA 2 n G NAG 1 G 1 NAG C 41 NAG 2 n G FUC 2 G 2 FUC C 43 FUC 2 n G NAG 3 G 3 NAG C 42 NAG 5 n H NAG 1 H 1 NAG C 51 NAG 5 n H NAG 2 H 2 NAG C 52 NAG 5 n H BMA 3 H 3 BMA C 53 BMA 5 n H MAN 4 H 4 MAN C 54 MAN 5 n H FUC 5 H 5 FUC C 55 FUC 5 n I NAG 1 I 1 NAG C 71 NAG 5 n I NAG 2 I 2 NAG C 72 NAG 5 n I BMA 3 I 3 BMA C 73 BMA 5 n I MAN 4 I 4 MAN C 74 MAN 5 n I FUC 5 I 5 FUC C 75 FUC 6 n J GLC 1 J 1 GLC B 691 045 6 n J FRU 2 J 2 FRU B 691 045 6 n J FRU 3 J 3 FRU B 691 045 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 401 A CYS 401 1_555 A SG CYS 449 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf2 B SG CYS 401 B CYS 401 1_555 B SG CYS 449 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A ND2 ASN 59 A ASN 59 1_555 K C1 NAG . A NAG 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale2 A ND2 ASN 178 A ASN 178 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale3 A ND2 ASN 400 A ASN 400 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 A ND2 ASN 521 A ASN 521 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale5 B ND2 ASN 59 B ASN 59 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale6 B ND2 ASN 178 B ASN 178 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 B ND2 ASN 400 B ASN 400 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale8 B ND2 ASN 521 B ASN 521 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 C O3 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale10 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale11 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale12 D O4 NAG . D NAG 2 1_555 D C1 BMA . D BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.467 ? covale ? covale13 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale14 E O3 NAG . E NAG 1 1_555 E C1 FUC . E FUC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale15 E O4 NAG . E NAG 2 1_555 E C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale16 E O2 BMA . E BMA 3 1_555 E C1 XYS . E XYS 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale17 E O3 BMA . E BMA 3 1_555 E C1 MAN . E MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale18 E O6 BMA . E BMA 3 1_555 E C1 MAN . E MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale19 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale20 F O4 NAG . F NAG 2 1_555 F C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale21 G O3 NAG . G NAG 1 1_555 G C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale22 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale23 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale24 H O3 NAG . H NAG 1 1_555 H C1 FUC . H FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale25 H O4 NAG . H NAG 2 1_555 H C1 BMA . H BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale26 H O6 BMA . H BMA 3 1_555 H C1 MAN . H MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale27 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale28 I O3 NAG . I NAG 1 1_555 I C1 FUC . I FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale29 I O4 NAG . I NAG 2 1_555 I C1 BMA . I BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale30 I O6 BMA . I BMA 3 1_555 I C1 MAN . I MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.448 ? covale ? covale31 J C1 GLC . J GLC 1 1_555 J O2 FRU . J FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 sing covale ? covale32 J O6 FRU . J FRU 2 1_555 J C2 FRU . J FRU 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 224 n n C1 C2 GOL sing 225 n n C1 H11 GOL sing 226 n n C1 H12 GOL sing 227 n n O1 HO1 GOL sing 228 n n C2 O2 GOL sing 229 n n C2 C3 GOL sing 230 n n C2 H2 GOL sing 231 n n O2 HO2 GOL sing 232 n n C3 O3 GOL sing 233 n n C3 H31 GOL sing 234 n n C3 H32 GOL sing 235 n n O3 HO3 GOL sing 236 n n # _atom_sites.entry_id 3UGH _atom_sites.fract_transf_matrix[1][1] 0.011326 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 7 NAG A 1 547 1 NAG NAG . L 8 SO4 A 1 561 82 SO4 SO4 . M 9 GOL A 1 562 84 GOL GOL . N 8 SO4 B 1 563 81 SO4 SO4 . O 9 GOL B 1 564 83 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . M 9 -5.609 20.983 -37.399 1 42.3 ? C1 GOL 562 A 1 HETATM 2 O O1 GOL . . . M 9 -4.511 20.781 -38.26 1 41.88 ? O1 GOL 562 A 1 HETATM 3 C C2 GOL . . . M 9 -5.183 21.761 -36.155 1 42.36 ? C2 GOL 562 A 1 HETATM 4 O O2 GOL . . . M 9 -6.184 22.711 -35.866 1 42.19 ? O2 GOL 562 A 1 HETATM 5 C C3 GOL . . . M 9 -5.012 20.806 -34.971 1 42.08 ? C3 GOL 562 A 1 HETATM 6 O O3 GOL . . . M 9 -4.387 21.436 -33.874 1 40.89 ? O3 GOL 562 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 428 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #