data_3UGX # _model_server_result.job_id evMAwl9-d2zyQvR7x7BUdQ _model_server_result.datetime_utc '2024-11-13 19:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ugx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":408}' # _entry.id 3UGX # _exptl.entry_id 3UGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UGX _cell.length_a 168.363 _cell.length_b 184.329 _cell.length_c 90.404 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,H,I,J,K,L,M,N,O,FA 1 1 B,P,Q,R,S,T,GA 2 1 C,U,V,W,X,Y,Z,AA,HA 3 1 D,BA,CA,DA,EA,IA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 O N N ? 4 T N N ? 4 Y N N ? 4 Z N N ? 4 AA N N ? 4 EA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O GLN 205 B GLN 195 1_555 S NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? metalc ? metalc2 S NA NA . B NA 408 1_555 GA O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? metalc ? metalc3 S NA NA . B NA 408 1_555 GA O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc4 S NA NA . B NA 408 1_555 GA O HOH . B HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3UGX _atom_sites.fract_transf_matrix[1][1] 0.00594 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011061 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 PTD A 1 405 1 PTD PTD . F 2 PTD A 1 406 2 PTD PTD . G 2 PTD A 1 407 4 PTD PTD . H 2 PTD A 1 408 5 PTD PTD . I 2 PTD A 1 409 8 PTD PTD . J 2 PTD A 1 410 9 PTD PTD . K 2 PTD A 1 411 11 PTD PTD . L 2 PTD A 1 412 12 PTD PTD . M 3 NA A 1 413 2 NA NA . N 4 EDO A 1 414 1 EDO EDO . O 4 EDO A 1 415 3 EDO EDO . P 5 IMD B 1 405 1 IMD IMD . Q 2 PTD B 1 406 3 PTD PTD . R 2 PTD B 1 407 7 PTD PTD . S 3 NA B 1 408 1 NA NA . T 4 EDO B 1 409 8 EDO EDO . U 2 PTD C 1 405 10 PTD PTD . V 2 PTD C 1 406 13 PTD PTD . W 2 PTD C 1 407 14 PTD PTD . X 6 K C 1 408 1 K K . Y 4 EDO C 1 409 2 EDO EDO . Z 4 EDO C 1 410 4 EDO EDO . AA 4 EDO C 1 411 6 EDO EDO . BA 5 IMD D 1 405 2 IMD IMD . CA 5 IMD D 1 406 3 IMD IMD . DA 2 PTD D 1 407 6 PTD PTD . EA 4 EDO D 1 408 5 EDO EDO . FA 7 HOH A 1 416 1 HOH HOH . FA 7 HOH A 2 417 4 HOH HOH . FA 7 HOH A 3 418 5 HOH HOH . FA 7 HOH A 4 419 6 HOH HOH . FA 7 HOH A 5 420 8 HOH HOH . FA 7 HOH A 6 421 10 HOH HOH . FA 7 HOH A 7 422 18 HOH HOH . FA 7 HOH A 8 423 27 HOH HOH . FA 7 HOH A 9 424 28 HOH HOH . FA 7 HOH A 10 425 29 HOH HOH . FA 7 HOH A 11 426 32 HOH HOH . FA 7 HOH A 12 427 34 HOH HOH . FA 7 HOH A 13 428 36 HOH HOH . FA 7 HOH A 14 429 37 HOH HOH . FA 7 HOH A 15 430 39 HOH HOH . FA 7 HOH A 16 431 43 HOH HOH . FA 7 HOH A 17 432 45 HOH HOH . FA 7 HOH A 18 433 48 HOH HOH . FA 7 HOH A 19 434 51 HOH HOH . FA 7 HOH A 20 435 52 HOH HOH . FA 7 HOH A 21 436 53 HOH HOH . FA 7 HOH A 22 437 54 HOH HOH . FA 7 HOH A 23 438 55 HOH HOH . FA 7 HOH A 24 439 57 HOH HOH . FA 7 HOH A 25 440 62 HOH HOH . FA 7 HOH A 26 441 63 HOH HOH . FA 7 HOH A 27 442 67 HOH HOH . FA 7 HOH A 28 443 71 HOH HOH . FA 7 HOH A 29 444 74 HOH HOH . FA 7 HOH A 30 445 78 HOH HOH . FA 7 HOH A 31 446 79 HOH HOH . FA 7 HOH A 32 447 82 HOH HOH . FA 7 HOH A 33 448 87 HOH HOH . FA 7 HOH A 34 449 90 HOH HOH . FA 7 HOH A 35 450 97 HOH HOH . FA 7 HOH A 36 451 99 HOH HOH . FA 7 HOH A 37 452 101 HOH HOH . FA 7 HOH A 38 453 105 HOH HOH . FA 7 HOH A 39 454 106 HOH HOH . FA 7 HOH A 40 455 107 HOH HOH . FA 7 HOH A 41 456 110 HOH HOH . FA 7 HOH A 42 457 111 HOH HOH . FA 7 HOH A 43 458 112 HOH HOH . FA 7 HOH A 44 459 120 HOH HOH . FA 7 HOH A 45 460 121 HOH HOH . FA 7 HOH A 46 461 126 HOH HOH . FA 7 HOH A 47 462 127 HOH HOH . FA 7 HOH A 48 463 129 HOH HOH . FA 7 HOH A 49 464 130 HOH HOH . FA 7 HOH A 50 465 133 HOH HOH . FA 7 HOH A 51 466 136 HOH HOH . FA 7 HOH A 52 467 138 HOH HOH . FA 7 HOH A 53 468 143 HOH HOH . FA 7 HOH A 54 469 146 HOH HOH . FA 7 HOH A 55 470 148 HOH HOH . FA 7 HOH A 56 471 149 HOH HOH . FA 7 HOH A 57 472 150 HOH HOH . FA 7 HOH A 58 473 151 HOH HOH . FA 7 HOH A 59 474 161 HOH HOH . FA 7 HOH A 60 475 162 HOH HOH . FA 7 HOH A 61 476 165 HOH HOH . FA 7 HOH A 62 477 166 HOH HOH . FA 7 HOH A 63 478 168 HOH HOH . FA 7 HOH A 64 479 170 HOH HOH . FA 7 HOH A 65 480 172 HOH HOH . FA 7 HOH A 66 481 174 HOH HOH . FA 7 HOH A 67 482 178 HOH HOH . FA 7 HOH A 68 483 179 HOH HOH . GA 7 HOH B 1 410 11 HOH HOH . GA 7 HOH B 2 411 16 HOH HOH . GA 7 HOH B 3 412 22 HOH HOH . GA 7 HOH B 4 413 30 HOH HOH . GA 7 HOH B 5 414 40 HOH HOH . GA 7 HOH B 6 415 42 HOH HOH . GA 7 HOH B 7 416 49 HOH HOH . GA 7 HOH B 8 417 61 HOH HOH . GA 7 HOH B 9 418 66 HOH HOH . GA 7 HOH B 10 419 70 HOH HOH . GA 7 HOH B 11 420 77 HOH HOH . GA 7 HOH B 12 421 83 HOH HOH . GA 7 HOH B 13 422 84 HOH HOH . GA 7 HOH B 14 423 85 HOH HOH . GA 7 HOH B 15 424 92 HOH HOH . GA 7 HOH B 16 425 93 HOH HOH . GA 7 HOH B 17 426 95 HOH HOH . GA 7 HOH B 18 427 113 HOH HOH . GA 7 HOH B 19 428 115 HOH HOH . GA 7 HOH B 20 429 124 HOH HOH . GA 7 HOH B 21 430 131 HOH HOH . GA 7 HOH B 22 431 132 HOH HOH . GA 7 HOH B 23 432 140 HOH HOH . GA 7 HOH B 24 433 142 HOH HOH . GA 7 HOH B 25 434 145 HOH HOH . GA 7 HOH B 26 435 164 HOH HOH . GA 7 HOH B 27 436 167 HOH HOH . GA 7 HOH B 28 437 169 HOH HOH . GA 7 HOH B 29 438 173 HOH HOH . GA 7 HOH B 30 439 176 HOH HOH . GA 7 HOH B 31 440 185 HOH HOH . HA 7 HOH C 1 412 2 HOH HOH . HA 7 HOH C 2 413 7 HOH HOH . HA 7 HOH C 3 414 12 HOH HOH . HA 7 HOH C 4 415 15 HOH HOH . HA 7 HOH C 5 416 17 HOH HOH . HA 7 HOH C 6 417 21 HOH HOH . HA 7 HOH C 7 418 24 HOH HOH . HA 7 HOH C 8 419 26 HOH HOH . HA 7 HOH C 9 420 31 HOH HOH . HA 7 HOH C 10 421 33 HOH HOH . HA 7 HOH C 11 422 35 HOH HOH . HA 7 HOH C 12 423 38 HOH HOH . HA 7 HOH C 13 424 44 HOH HOH . HA 7 HOH C 14 425 46 HOH HOH . HA 7 HOH C 15 426 47 HOH HOH . HA 7 HOH C 16 427 50 HOH HOH . HA 7 HOH C 17 428 56 HOH HOH . HA 7 HOH C 18 429 58 HOH HOH . HA 7 HOH C 19 430 68 HOH HOH . HA 7 HOH C 20 431 69 HOH HOH . HA 7 HOH C 21 432 73 HOH HOH . HA 7 HOH C 22 433 80 HOH HOH . HA 7 HOH C 23 434 81 HOH HOH . HA 7 HOH C 24 435 86 HOH HOH . HA 7 HOH C 25 436 89 HOH HOH . HA 7 HOH C 26 437 91 HOH HOH . HA 7 HOH C 27 438 94 HOH HOH . HA 7 HOH C 28 439 96 HOH HOH . HA 7 HOH C 29 440 102 HOH HOH . HA 7 HOH C 30 441 103 HOH HOH . HA 7 HOH C 31 442 108 HOH HOH . HA 7 HOH C 32 443 109 HOH HOH . HA 7 HOH C 33 444 116 HOH HOH . HA 7 HOH C 34 445 122 HOH HOH . HA 7 HOH C 35 446 128 HOH HOH . HA 7 HOH C 36 447 134 HOH HOH . HA 7 HOH C 37 448 137 HOH HOH . HA 7 HOH C 38 449 139 HOH HOH . HA 7 HOH C 39 450 141 HOH HOH . HA 7 HOH C 40 451 153 HOH HOH . HA 7 HOH C 41 452 157 HOH HOH . HA 7 HOH C 42 453 158 HOH HOH . HA 7 HOH C 43 454 171 HOH HOH . HA 7 HOH C 44 455 181 HOH HOH . HA 7 HOH C 45 456 183 HOH HOH . IA 7 HOH D 1 409 3 HOH HOH . IA 7 HOH D 2 410 9 HOH HOH . IA 7 HOH D 3 411 13 HOH HOH . IA 7 HOH D 4 412 14 HOH HOH . IA 7 HOH D 5 413 19 HOH HOH . IA 7 HOH D 6 414 20 HOH HOH . IA 7 HOH D 7 415 23 HOH HOH . IA 7 HOH D 8 416 25 HOH HOH . IA 7 HOH D 9 417 41 HOH HOH . IA 7 HOH D 10 418 59 HOH HOH . IA 7 HOH D 11 419 60 HOH HOH . IA 7 HOH D 12 420 64 HOH HOH . IA 7 HOH D 13 421 65 HOH HOH . IA 7 HOH D 14 422 72 HOH HOH . IA 7 HOH D 15 423 75 HOH HOH . IA 7 HOH D 16 424 76 HOH HOH . IA 7 HOH D 17 425 88 HOH HOH . IA 7 HOH D 18 426 98 HOH HOH . IA 7 HOH D 19 427 100 HOH HOH . IA 7 HOH D 20 428 104 HOH HOH . IA 7 HOH D 21 429 114 HOH HOH . IA 7 HOH D 22 430 117 HOH HOH . IA 7 HOH D 23 431 118 HOH HOH . IA 7 HOH D 24 432 119 HOH HOH . IA 7 HOH D 25 433 123 HOH HOH . IA 7 HOH D 26 434 125 HOH HOH . IA 7 HOH D 27 435 135 HOH HOH . IA 7 HOH D 28 436 144 HOH HOH . IA 7 HOH D 29 437 147 HOH HOH . IA 7 HOH D 30 438 152 HOH HOH . IA 7 HOH D 31 439 154 HOH HOH . IA 7 HOH D 32 440 155 HOH HOH . IA 7 HOH D 33 441 156 HOH HOH . IA 7 HOH D 34 442 159 HOH HOH . IA 7 HOH D 35 443 160 HOH HOH . IA 7 HOH D 36 444 163 HOH HOH . IA 7 HOH D 37 445 175 HOH HOH . IA 7 HOH D 38 446 177 HOH HOH . IA 7 HOH D 39 447 180 HOH HOH . IA 7 HOH D 40 448 182 HOH HOH . IA 7 HOH D 41 449 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . EA 4 48.241 56.246 37.806 1 63.24 ? C1 EDO 408 D 1 HETATM 2 O O1 EDO . . . EA 4 48.079 57.348 38.71 1 63.84 ? O1 EDO 408 D 1 HETATM 3 C C2 EDO . . . EA 4 49.706 56.063 37.415 1 62.59 ? C2 EDO 408 D 1 HETATM 4 O O2 EDO . . . EA 4 50.494 55.607 38.525 1 63.18 ? O2 EDO 408 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #