data_3UGX
#
_model_server_result.job_id            xjEbA5Q8a_s1RgJa_AAwCg 
_model_server_result.datetime_utc      '2024-11-28 14:06:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ugx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":410}' 
#
_entry.id    3UGX 
#
_exptl.entry_id    3UGX 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              100.116 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PENTANEDIAL 
_entity.pdbx_number_of_molecules    14 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UGX 
_cell.length_a            168.363 
_cell.length_b            184.329 
_cell.length_c            90.404 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UGX 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,I,J,K,L,M,N,O,FA 1 1 
B,P,Q,R,S,T,GA 2 1 
C,U,V,W,X,Y,Z,AA,HA 3 1 
D,BA,CA,DA,EA,IA 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 Q N N 
? 2 R N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B O GLN 205 B GLN 195 1_555 S NA NA . B NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.807 ? 
metalc ? metalc2 S NA NA . B NA 408 1_555 GA O HOH . B HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc3 S NA NA . B NA 408 1_555 GA O HOH . B HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? 
metalc ? metalc4 S NA NA . B NA 408 1_555 GA O HOH . B HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
#
_chem_comp.formula           'C5 H8 O2' 
_chem_comp.formula_weight    100.116 
_chem_comp.id                PTD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PENTANEDIAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PTD sing 296 n n 
C1 O1 PTD doub 297 n n 
C1 HC1 PTD sing 298 n n 
C2 C3 PTD sing 299 n n 
C2 HC21 PTD sing 300 n n 
C2 HC22 PTD sing 301 n n 
C3 C4 PTD sing 302 n n 
C3 HC31 PTD sing 303 n n 
C3 HC32 PTD sing 304 n n 
C4 C5 PTD sing 305 n n 
C4 HC41 PTD sing 306 n n 
C4 HC42 PTD sing 307 n n 
C5 O5 PTD doub 308 n n 
C5 HC5 PTD sing 309 n n 
#
_atom_sites.entry_id                     3UGX 
_atom_sites.fract_transf_matrix[1][1]    0.00594 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005425 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PTD A 1 405 1 PTD PTD . 
F 2 PTD A 1 406 2 PTD PTD . 
G 2 PTD A 1 407 4 PTD PTD . 
H 2 PTD A 1 408 5 PTD PTD . 
I 2 PTD A 1 409 8 PTD PTD . 
J 2 PTD A 1 410 9 PTD PTD . 
K 2 PTD A 1 411 11 PTD PTD . 
L 2 PTD A 1 412 12 PTD PTD . 
M 3 NA A 1 413 2 NA NA . 
N 4 EDO A 1 414 1 EDO EDO . 
O 4 EDO A 1 415 3 EDO EDO . 
P 5 IMD B 1 405 1 IMD IMD . 
Q 2 PTD B 1 406 3 PTD PTD . 
R 2 PTD B 1 407 7 PTD PTD . 
S 3 NA B 1 408 1 NA NA . 
T 4 EDO B 1 409 8 EDO EDO . 
U 2 PTD C 1 405 10 PTD PTD . 
V 2 PTD C 1 406 13 PTD PTD . 
W 2 PTD C 1 407 14 PTD PTD . 
X 6 K C 1 408 1 K K . 
Y 4 EDO C 1 409 2 EDO EDO . 
Z 4 EDO C 1 410 4 EDO EDO . 
AA 4 EDO C 1 411 6 EDO EDO . 
BA 5 IMD D 1 405 2 IMD IMD . 
CA 5 IMD D 1 406 3 IMD IMD . 
DA 2 PTD D 1 407 6 PTD PTD . 
EA 4 EDO D 1 408 5 EDO EDO . 
FA 7 HOH A 1 416 1 HOH HOH . 
FA 7 HOH A 2 417 4 HOH HOH . 
FA 7 HOH A 3 418 5 HOH HOH . 
FA 7 HOH A 4 419 6 HOH HOH . 
FA 7 HOH A 5 420 8 HOH HOH . 
FA 7 HOH A 6 421 10 HOH HOH . 
FA 7 HOH A 7 422 18 HOH HOH . 
FA 7 HOH A 8 423 27 HOH HOH . 
FA 7 HOH A 9 424 28 HOH HOH . 
FA 7 HOH A 10 425 29 HOH HOH . 
FA 7 HOH A 11 426 32 HOH HOH . 
FA 7 HOH A 12 427 34 HOH HOH . 
FA 7 HOH A 13 428 36 HOH HOH . 
FA 7 HOH A 14 429 37 HOH HOH . 
FA 7 HOH A 15 430 39 HOH HOH . 
FA 7 HOH A 16 431 43 HOH HOH . 
FA 7 HOH A 17 432 45 HOH HOH . 
FA 7 HOH A 18 433 48 HOH HOH . 
FA 7 HOH A 19 434 51 HOH HOH . 
FA 7 HOH A 20 435 52 HOH HOH . 
FA 7 HOH A 21 436 53 HOH HOH . 
FA 7 HOH A 22 437 54 HOH HOH . 
FA 7 HOH A 23 438 55 HOH HOH . 
FA 7 HOH A 24 439 57 HOH HOH . 
FA 7 HOH A 25 440 62 HOH HOH . 
FA 7 HOH A 26 441 63 HOH HOH . 
FA 7 HOH A 27 442 67 HOH HOH . 
FA 7 HOH A 28 443 71 HOH HOH . 
FA 7 HOH A 29 444 74 HOH HOH . 
FA 7 HOH A 30 445 78 HOH HOH . 
FA 7 HOH A 31 446 79 HOH HOH . 
FA 7 HOH A 32 447 82 HOH HOH . 
FA 7 HOH A 33 448 87 HOH HOH . 
FA 7 HOH A 34 449 90 HOH HOH . 
FA 7 HOH A 35 450 97 HOH HOH . 
FA 7 HOH A 36 451 99 HOH HOH . 
FA 7 HOH A 37 452 101 HOH HOH . 
FA 7 HOH A 38 453 105 HOH HOH . 
FA 7 HOH A 39 454 106 HOH HOH . 
FA 7 HOH A 40 455 107 HOH HOH . 
FA 7 HOH A 41 456 110 HOH HOH . 
FA 7 HOH A 42 457 111 HOH HOH . 
FA 7 HOH A 43 458 112 HOH HOH . 
FA 7 HOH A 44 459 120 HOH HOH . 
FA 7 HOH A 45 460 121 HOH HOH . 
FA 7 HOH A 46 461 126 HOH HOH . 
FA 7 HOH A 47 462 127 HOH HOH . 
FA 7 HOH A 48 463 129 HOH HOH . 
FA 7 HOH A 49 464 130 HOH HOH . 
FA 7 HOH A 50 465 133 HOH HOH . 
FA 7 HOH A 51 466 136 HOH HOH . 
FA 7 HOH A 52 467 138 HOH HOH . 
FA 7 HOH A 53 468 143 HOH HOH . 
FA 7 HOH A 54 469 146 HOH HOH . 
FA 7 HOH A 55 470 148 HOH HOH . 
FA 7 HOH A 56 471 149 HOH HOH . 
FA 7 HOH A 57 472 150 HOH HOH . 
FA 7 HOH A 58 473 151 HOH HOH . 
FA 7 HOH A 59 474 161 HOH HOH . 
FA 7 HOH A 60 475 162 HOH HOH . 
FA 7 HOH A 61 476 165 HOH HOH . 
FA 7 HOH A 62 477 166 HOH HOH . 
FA 7 HOH A 63 478 168 HOH HOH . 
FA 7 HOH A 64 479 170 HOH HOH . 
FA 7 HOH A 65 480 172 HOH HOH . 
FA 7 HOH A 66 481 174 HOH HOH . 
FA 7 HOH A 67 482 178 HOH HOH . 
FA 7 HOH A 68 483 179 HOH HOH . 
GA 7 HOH B 1 410 11 HOH HOH . 
GA 7 HOH B 2 411 16 HOH HOH . 
GA 7 HOH B 3 412 22 HOH HOH . 
GA 7 HOH B 4 413 30 HOH HOH . 
GA 7 HOH B 5 414 40 HOH HOH . 
GA 7 HOH B 6 415 42 HOH HOH . 
GA 7 HOH B 7 416 49 HOH HOH . 
GA 7 HOH B 8 417 61 HOH HOH . 
GA 7 HOH B 9 418 66 HOH HOH . 
GA 7 HOH B 10 419 70 HOH HOH . 
GA 7 HOH B 11 420 77 HOH HOH . 
GA 7 HOH B 12 421 83 HOH HOH . 
GA 7 HOH B 13 422 84 HOH HOH . 
GA 7 HOH B 14 423 85 HOH HOH . 
GA 7 HOH B 15 424 92 HOH HOH . 
GA 7 HOH B 16 425 93 HOH HOH . 
GA 7 HOH B 17 426 95 HOH HOH . 
GA 7 HOH B 18 427 113 HOH HOH . 
GA 7 HOH B 19 428 115 HOH HOH . 
GA 7 HOH B 20 429 124 HOH HOH . 
GA 7 HOH B 21 430 131 HOH HOH . 
GA 7 HOH B 22 431 132 HOH HOH . 
GA 7 HOH B 23 432 140 HOH HOH . 
GA 7 HOH B 24 433 142 HOH HOH . 
GA 7 HOH B 25 434 145 HOH HOH . 
GA 7 HOH B 26 435 164 HOH HOH . 
GA 7 HOH B 27 436 167 HOH HOH . 
GA 7 HOH B 28 437 169 HOH HOH . 
GA 7 HOH B 29 438 173 HOH HOH . 
GA 7 HOH B 30 439 176 HOH HOH . 
GA 7 HOH B 31 440 185 HOH HOH . 
HA 7 HOH C 1 412 2 HOH HOH . 
HA 7 HOH C 2 413 7 HOH HOH . 
HA 7 HOH C 3 414 12 HOH HOH . 
HA 7 HOH C 4 415 15 HOH HOH . 
HA 7 HOH C 5 416 17 HOH HOH . 
HA 7 HOH C 6 417 21 HOH HOH . 
HA 7 HOH C 7 418 24 HOH HOH . 
HA 7 HOH C 8 419 26 HOH HOH . 
HA 7 HOH C 9 420 31 HOH HOH . 
HA 7 HOH C 10 421 33 HOH HOH . 
HA 7 HOH C 11 422 35 HOH HOH . 
HA 7 HOH C 12 423 38 HOH HOH . 
HA 7 HOH C 13 424 44 HOH HOH . 
HA 7 HOH C 14 425 46 HOH HOH . 
HA 7 HOH C 15 426 47 HOH HOH . 
HA 7 HOH C 16 427 50 HOH HOH . 
HA 7 HOH C 17 428 56 HOH HOH . 
HA 7 HOH C 18 429 58 HOH HOH . 
HA 7 HOH C 19 430 68 HOH HOH . 
HA 7 HOH C 20 431 69 HOH HOH . 
HA 7 HOH C 21 432 73 HOH HOH . 
HA 7 HOH C 22 433 80 HOH HOH . 
HA 7 HOH C 23 434 81 HOH HOH . 
HA 7 HOH C 24 435 86 HOH HOH . 
HA 7 HOH C 25 436 89 HOH HOH . 
HA 7 HOH C 26 437 91 HOH HOH . 
HA 7 HOH C 27 438 94 HOH HOH . 
HA 7 HOH C 28 439 96 HOH HOH . 
HA 7 HOH C 29 440 102 HOH HOH . 
HA 7 HOH C 30 441 103 HOH HOH . 
HA 7 HOH C 31 442 108 HOH HOH . 
HA 7 HOH C 32 443 109 HOH HOH . 
HA 7 HOH C 33 444 116 HOH HOH . 
HA 7 HOH C 34 445 122 HOH HOH . 
HA 7 HOH C 35 446 128 HOH HOH . 
HA 7 HOH C 36 447 134 HOH HOH . 
HA 7 HOH C 37 448 137 HOH HOH . 
HA 7 HOH C 38 449 139 HOH HOH . 
HA 7 HOH C 39 450 141 HOH HOH . 
HA 7 HOH C 40 451 153 HOH HOH . 
HA 7 HOH C 41 452 157 HOH HOH . 
HA 7 HOH C 42 453 158 HOH HOH . 
HA 7 HOH C 43 454 171 HOH HOH . 
HA 7 HOH C 44 455 181 HOH HOH . 
HA 7 HOH C 45 456 183 HOH HOH . 
IA 7 HOH D 1 409 3 HOH HOH . 
IA 7 HOH D 2 410 9 HOH HOH . 
IA 7 HOH D 3 411 13 HOH HOH . 
IA 7 HOH D 4 412 14 HOH HOH . 
IA 7 HOH D 5 413 19 HOH HOH . 
IA 7 HOH D 6 414 20 HOH HOH . 
IA 7 HOH D 7 415 23 HOH HOH . 
IA 7 HOH D 8 416 25 HOH HOH . 
IA 7 HOH D 9 417 41 HOH HOH . 
IA 7 HOH D 10 418 59 HOH HOH . 
IA 7 HOH D 11 419 60 HOH HOH . 
IA 7 HOH D 12 420 64 HOH HOH . 
IA 7 HOH D 13 421 65 HOH HOH . 
IA 7 HOH D 14 422 72 HOH HOH . 
IA 7 HOH D 15 423 75 HOH HOH . 
IA 7 HOH D 16 424 76 HOH HOH . 
IA 7 HOH D 17 425 88 HOH HOH . 
IA 7 HOH D 18 426 98 HOH HOH . 
IA 7 HOH D 19 427 100 HOH HOH . 
IA 7 HOH D 20 428 104 HOH HOH . 
IA 7 HOH D 21 429 114 HOH HOH . 
IA 7 HOH D 22 430 117 HOH HOH . 
IA 7 HOH D 23 431 118 HOH HOH . 
IA 7 HOH D 24 432 119 HOH HOH . 
IA 7 HOH D 25 433 123 HOH HOH . 
IA 7 HOH D 26 434 125 HOH HOH . 
IA 7 HOH D 27 435 135 HOH HOH . 
IA 7 HOH D 28 436 144 HOH HOH . 
IA 7 HOH D 29 437 147 HOH HOH . 
IA 7 HOH D 30 438 152 HOH HOH . 
IA 7 HOH D 31 439 154 HOH HOH . 
IA 7 HOH D 32 440 155 HOH HOH . 
IA 7 HOH D 33 441 156 HOH HOH . 
IA 7 HOH D 34 442 159 HOH HOH . 
IA 7 HOH D 35 443 160 HOH HOH . 
IA 7 HOH D 36 444 163 HOH HOH . 
IA 7 HOH D 37 445 175 HOH HOH . 
IA 7 HOH D 38 446 177 HOH HOH . 
IA 7 HOH D 39 447 180 HOH HOH . 
IA 7 HOH D 40 448 182 HOH HOH . 
IA 7 HOH D 41 449 184 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PTD . . . J 2 89.087 34.738 2.939 1 63.68 ? C1 PTD 410 A 1 
HETATM 2 C C2 PTD . . . J 2 88.443 34.893 1.593 1 59.31 ? C2 PTD 410 A 1 
HETATM 3 C C3 PTD . . . J 2 88.667 33.829 0.555 1 62.48 ? C3 PTD 410 A 1 
HETATM 4 C C4 PTD . . . J 2 87.9 32.53 0.639 1 56.86 ? C4 PTD 410 A 1 
HETATM 5 C C5 PTD . . . J 2 88.088 31.592 1.799 1 59.19 ? C5 PTD 410 A 1 
HETATM 6 O O1 PTD . . . J 2 88.57 35.428 4.03 1 55.34 ? O1 PTD 410 A 1 
HETATM 7 O O5 PTD . . . J 2 87.992 32.016 3.131 1 55.47 ? O5 PTD 410 A 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           305 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           7 
#