data_3UHE # _model_server_result.job_id X2OBV8kVymUT7DvAGTR9ig _model_server_result.datetime_utc '2024-11-15 00:47:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uhe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":147}' # _entry.id 3UHE # _exptl.entry_id 3UHE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.96 _cell.angle_gamma 90 _cell.entry_id 3UHE _cell.length_a 92.96 _cell.length_b 44.03 _cell.length_c 83.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UHE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc2 C FE HEM . A HEM 147 1_555 D C CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 E FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 E FE HEM . B HEM 147 1_555 F C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 3UHE _atom_sites.fract_transf_matrix[1][1] 0.010757 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006711 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022712 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 147 147 HEM HEM . D 3 CMO A 1 148 148 CMO CMO . E 2 HEM B 1 147 147 HEM HEM . F 3 CMO B 1 148 148 CMO CMO . G 4 HOH A 1 149 4 HOH HOH . G 4 HOH A 2 150 6 HOH HOH . G 4 HOH A 3 151 7 HOH HOH . G 4 HOH A 4 152 8 HOH HOH . G 4 HOH A 5 153 9 HOH HOH . G 4 HOH A 6 154 11 HOH HOH . G 4 HOH A 7 155 15 HOH HOH . G 4 HOH A 8 156 16 HOH HOH . G 4 HOH A 9 157 17 HOH HOH . G 4 HOH A 10 158 18 HOH HOH . G 4 HOH A 11 159 20 HOH HOH . G 4 HOH A 12 160 21 HOH HOH . G 4 HOH A 13 161 23 HOH HOH . G 4 HOH A 14 162 24 HOH HOH . G 4 HOH A 15 163 26 HOH HOH . G 4 HOH A 16 164 28 HOH HOH . G 4 HOH A 17 165 29 HOH HOH . G 4 HOH A 18 166 33 HOH HOH . G 4 HOH A 19 167 37 HOH HOH . G 4 HOH A 20 168 38 HOH HOH . G 4 HOH A 21 169 41 HOH HOH . G 4 HOH A 22 170 42 HOH HOH . G 4 HOH A 23 171 45 HOH HOH . G 4 HOH A 24 172 48 HOH HOH . G 4 HOH A 25 173 50 HOH HOH . G 4 HOH A 26 174 53 HOH HOH . G 4 HOH A 27 175 55 HOH HOH . H 4 HOH B 1 149 1 HOH HOH . H 4 HOH B 2 150 2 HOH HOH . H 4 HOH B 3 151 3 HOH HOH . H 4 HOH B 4 152 5 HOH HOH . H 4 HOH B 5 153 10 HOH HOH . H 4 HOH B 6 154 12 HOH HOH . H 4 HOH B 7 155 13 HOH HOH . H 4 HOH B 8 156 14 HOH HOH . H 4 HOH B 9 157 19 HOH HOH . H 4 HOH B 10 158 22 HOH HOH . H 4 HOH B 11 159 25 HOH HOH . H 4 HOH B 12 160 27 HOH HOH . H 4 HOH B 13 161 30 HOH HOH . H 4 HOH B 14 162 31 HOH HOH . H 4 HOH B 15 163 32 HOH HOH . H 4 HOH B 16 164 34 HOH HOH . H 4 HOH B 17 165 35 HOH HOH . H 4 HOH B 18 166 36 HOH HOH . H 4 HOH B 19 167 39 HOH HOH . H 4 HOH B 20 168 40 HOH HOH . H 4 HOH B 21 169 43 HOH HOH . H 4 HOH B 22 170 44 HOH HOH . H 4 HOH B 23 171 46 HOH HOH . H 4 HOH B 24 172 47 HOH HOH . H 4 HOH B 25 173 49 HOH HOH . H 4 HOH B 26 174 51 HOH HOH . H 4 HOH B 27 175 52 HOH HOH . H 4 HOH B 28 176 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 41.778 -0.624 17.387 1 20.12 ? CHA HEM 147 A 1 HETATM 2 C CHB HEM . . . C 2 39.461 -1.915 21.482 1 20.12 ? CHB HEM 147 A 1 HETATM 3 C CHC HEM . . . C 2 43.71 -3.398 23.361 1 20.12 ? CHC HEM 147 A 1 HETATM 4 C CHD HEM . . . C 2 45.871 -2.577 19.086 1 20.12 ? CHD HEM 147 A 1 HETATM 5 C C1A HEM . . . C 2 40.777 -0.822 18.348 1 20.12 ? C1A HEM 147 A 1 HETATM 6 C C2A HEM . . . C 2 39.395 -0.469 18.18 1 20.12 ? C2A HEM 147 A 1 HETATM 7 C C3A HEM . . . C 2 38.737 -0.821 19.315 1 20.12 ? C3A HEM 147 A 1 HETATM 8 C C4A HEM . . . C 2 39.717 -1.408 20.201 1 20.12 ? C4A HEM 147 A 1 HETATM 9 C CMA HEM . . . C 2 37.257 -0.611 19.591 1 20.12 ? CMA HEM 147 A 1 HETATM 10 C CAA HEM . . . C 2 38.813 0.132 16.917 1 20.12 ? CAA HEM 147 A 1 HETATM 11 C CBA HEM . . . C 2 38.488 -0.934 15.893 1 20.12 ? CBA HEM 147 A 1 HETATM 12 C CGA HEM . . . C 2 38.505 -0.387 14.486 1 20.12 ? CGA HEM 147 A 1 HETATM 13 O O1A HEM . . . C 2 37.814 0.623 14.23 1 20.12 ? O1A HEM 147 A 1 HETATM 14 O O2A HEM . . . C 2 39.214 -0.964 13.634 1 20.12 ? O2A HEM 147 A 1 HETATM 15 C C1B HEM . . . C 2 40.425 -2.447 22.357 1 20.12 ? C1B HEM 147 A 1 HETATM 16 C C2B HEM . . . C 2 40.149 -2.922 23.705 1 20.12 ? C2B HEM 147 A 1 HETATM 17 C C3B HEM . . . C 2 41.345 -3.297 24.256 1 20.12 ? C3B HEM 147 A 1 HETATM 18 C C4B HEM . . . C 2 42.358 -3.067 23.234 1 20.12 ? C4B HEM 147 A 1 HETATM 19 C CMB HEM . . . C 2 38.762 -3.122 24.304 1 20.12 ? CMB HEM 147 A 1 HETATM 20 C CAB HEM . . . C 2 41.559 -3.913 25.484 1 20.12 ? CAB HEM 147 A 1 HETATM 21 C CBB HEM . . . C 2 40.994 -3.476 26.739 1 20.12 ? CBB HEM 147 A 1 HETATM 22 C C1C HEM . . . C 2 44.671 -3.279 22.362 1 20.12 ? C1C HEM 147 A 1 HETATM 23 C C2C HEM . . . C 2 46.068 -3.64 22.532 1 20.12 ? C2C HEM 147 A 1 HETATM 24 C C3C HEM . . . C 2 46.696 -3.395 21.328 1 20.12 ? C3C HEM 147 A 1 HETATM 25 C C4C HEM . . . C 2 45.657 -2.919 20.426 1 20.12 ? C4C HEM 147 A 1 HETATM 26 C CMC HEM . . . C 2 46.717 -4.096 23.848 1 20.12 ? CMC HEM 147 A 1 HETATM 27 C CAC HEM . . . C 2 48.063 -3.431 21.025 1 20.12 ? CAC HEM 147 A 1 HETATM 28 C CBC HEM . . . C 2 49.113 -4.183 21.695 1 20.12 ? CBC HEM 147 A 1 HETATM 29 C C1D HEM . . . C 2 44.948 -1.954 18.248 1 20.12 ? C1D HEM 147 A 1 HETATM 30 C C2D HEM . . . C 2 45.296 -1.347 16.968 1 20.12 ? C2D HEM 147 A 1 HETATM 31 C C3D HEM . . . C 2 44.166 -0.734 16.538 1 20.12 ? C3D HEM 147 A 1 HETATM 32 C C4D HEM . . . C 2 43.115 -0.996 17.512 1 20.12 ? C4D HEM 147 A 1 HETATM 33 C CMD HEM . . . C 2 46.633 -1.401 16.226 1 20.12 ? CMD HEM 147 A 1 HETATM 34 C CAD HEM . . . C 2 44.047 0.112 15.283 1 20.12 ? CAD HEM 147 A 1 HETATM 35 C CBD HEM . . . C 2 44.055 1.6 15.562 1 20.12 ? CBD HEM 147 A 1 HETATM 36 C CGD HEM . . . C 2 43.813 2.421 14.311 1 20.12 ? CGD HEM 147 A 1 HETATM 37 O O1D HEM . . . C 2 44.63 2.329 13.37 1 20.12 ? O1D HEM 147 A 1 HETATM 38 O O2D HEM . . . C 2 42.803 3.156 14.272 1 20.12 ? O2D HEM 147 A 1 HETATM 39 N NA HEM . . . C 2 40.966 -1.406 19.596 1 20.12 ? NA HEM 147 A 1 HETATM 40 N NB HEM . . . C 2 41.778 -2.567 22.071 1 20.12 ? NB HEM 147 A 1 HETATM 41 N NC HEM . . . C 2 44.436 -2.818 21.079 1 20.12 ? NC HEM 147 A 1 HETATM 42 N ND HEM . . . C 2 43.629 -1.693 18.59 1 20.12 ? ND HEM 147 A 1 HETATM 43 FE FE HEM . . . C 2 42.678 -2.177 20.309 1 20.12 ? FE HEM 147 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #