data_3UHI # _model_server_result.job_id uOqaorwX3HcIAKB0sITHDQ _model_server_result.datetime_utc '2024-10-14 09:24:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uhi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":147}' # _entry.id 3UHI # _exptl.entry_id 3UHI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.25 _cell.angle_gamma 90 _cell.entry_id 3UHI _cell.length_a 83.63 _cell.length_b 43.95 _cell.length_c 87.52 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UHI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 E FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc2 E FE HEM . A HEM 147 1_555 F C CMO . A CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc3 B NE2 HIS 101 B HIS 101 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc4 G FE HEM . B HEM 147 1_555 H C CMO . B CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc5 C NE2 HIS 101 C HIS 101 1_555 I FE HEM . C HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc6 I FE HEM . C HEM 147 1_555 J C CMO . C CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.902 ? metalc ? metalc7 D NE2 HIS 101 D HIS 101 1_555 K FE HEM . D HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 K FE HEM . D HEM 147 1_555 L C CMO . D CMO 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 130 n n CHA C4D HEM doub 131 n n CHA HHA HEM sing 132 n n CHB C4A HEM sing 133 n n CHB C1B HEM doub 134 n n CHB HHB HEM sing 135 n n CHC C4B HEM sing 136 n n CHC C1C HEM doub 137 n n CHC HHC HEM sing 138 n n CHD C4C HEM doub 139 n n CHD C1D HEM sing 140 n n CHD HHD HEM sing 141 n n C1A C2A HEM doub 142 n y C1A NA HEM sing 143 n y C2A C3A HEM sing 144 n y C2A CAA HEM sing 145 n n C3A C4A HEM doub 146 n y C3A CMA HEM sing 147 n n C4A NA HEM sing 148 n y CMA HMA HEM sing 149 n n CMA HMAA HEM sing 150 n n CMA HMAB HEM sing 151 n n CAA CBA HEM sing 152 n n CAA HAA HEM sing 153 n n CAA HAAA HEM sing 154 n n CBA CGA HEM sing 155 n n CBA HBA HEM sing 156 n n CBA HBAA HEM sing 157 n n CGA O1A HEM doub 158 n n CGA O2A HEM sing 159 n n C1B C2B HEM sing 160 n n C1B NB HEM sing 161 n n C2B C3B HEM doub 162 n n C2B CMB HEM sing 163 n n C3B C4B HEM sing 164 n n C3B CAB HEM sing 165 n n C4B NB HEM doub 166 n n CMB HMB HEM sing 167 n n CMB HMBA HEM sing 168 n n CMB HMBB HEM sing 169 n n CAB CBB HEM doub 170 n n CAB HAB HEM sing 171 n n CBB HBB HEM sing 172 n n CBB HBBA HEM sing 173 n n C1C C2C HEM sing 174 n y C1C NC HEM sing 175 n y C2C C3C HEM doub 176 n y C2C CMC HEM sing 177 n n C3C C4C HEM sing 178 n y C3C CAC HEM sing 179 n n C4C NC HEM sing 180 n y CMC HMC HEM sing 181 n n CMC HMCA HEM sing 182 n n CMC HMCB HEM sing 183 n n CAC CBC HEM doub 184 n n CAC HAC HEM sing 185 n n CBC HBC HEM sing 186 n n CBC HBCA HEM sing 187 n n C1D C2D HEM sing 188 n n C1D ND HEM doub 189 n n C2D C3D HEM doub 190 n n C2D CMD HEM sing 191 n n C3D C4D HEM sing 192 n n C3D CAD HEM sing 193 n n C4D ND HEM sing 194 n n CMD HMD HEM sing 195 n n CMD HMDA HEM sing 196 n n CMD HMDB HEM sing 197 n n CAD CBD HEM sing 198 n n CAD HAD HEM sing 199 n n CAD HADA HEM sing 200 n n CBD CGD HEM sing 201 n n CBD HBD HEM sing 202 n n CBD HBDA HEM sing 203 n n CGD O1D HEM doub 204 n n CGD O2D HEM sing 205 n n O2A H2A HEM sing 206 n n O2D H2D HEM sing 207 n n FE NA HEM sing 208 n n FE NB HEM sing 209 n n FE NC HEM sing 210 n n FE ND HEM sing 211 n n # _atom_sites.entry_id 3UHI _atom_sites.fract_transf_matrix[1][1] 0.011957 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005639 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022753 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HEM A 1 147 147 HEM HEM . F 3 CMO A 1 148 148 CMO CMO . G 2 HEM B 1 147 147 HEM HEM . H 3 CMO B 1 148 148 CMO CMO . I 2 HEM C 1 147 147 HEM HEM . J 3 CMO C 1 148 148 CMO CMO . K 2 HEM D 1 147 147 HEM HEM . L 3 CMO D 1 148 148 CMO CMO . M 4 HOH A 1 149 2 HOH HOH . M 4 HOH A 2 150 3 HOH HOH . M 4 HOH A 3 151 4 HOH HOH . M 4 HOH A 4 152 24 HOH HOH . M 4 HOH A 5 153 25 HOH HOH . M 4 HOH A 6 154 26 HOH HOH . M 4 HOH A 7 155 28 HOH HOH . M 4 HOH A 8 156 33 HOH HOH . M 4 HOH A 9 157 37 HOH HOH . M 4 HOH A 10 158 42 HOH HOH . M 4 HOH A 11 159 43 HOH HOH . N 4 HOH B 1 149 1 HOH HOH . N 4 HOH B 2 150 5 HOH HOH . N 4 HOH B 3 151 8 HOH HOH . N 4 HOH B 4 152 10 HOH HOH . N 4 HOH B 5 153 15 HOH HOH . N 4 HOH B 6 154 16 HOH HOH . N 4 HOH B 7 155 18 HOH HOH . N 4 HOH B 8 156 22 HOH HOH . N 4 HOH B 9 157 30 HOH HOH . N 4 HOH B 10 158 31 HOH HOH . N 4 HOH B 11 159 36 HOH HOH . N 4 HOH B 12 160 39 HOH HOH . N 4 HOH B 13 161 41 HOH HOH . N 4 HOH B 14 162 48 HOH HOH . N 4 HOH B 15 163 51 HOH HOH . N 4 HOH B 16 164 53 HOH HOH . N 4 HOH B 17 165 54 HOH HOH . O 4 HOH C 1 149 7 HOH HOH . O 4 HOH C 2 150 9 HOH HOH . O 4 HOH C 3 151 12 HOH HOH . O 4 HOH C 4 152 17 HOH HOH . O 4 HOH C 5 153 20 HOH HOH . O 4 HOH C 6 154 21 HOH HOH . O 4 HOH C 7 155 27 HOH HOH . O 4 HOH C 8 156 29 HOH HOH . O 4 HOH C 9 157 32 HOH HOH . O 4 HOH C 10 158 34 HOH HOH . O 4 HOH C 11 159 35 HOH HOH . O 4 HOH C 12 160 40 HOH HOH . O 4 HOH C 13 161 46 HOH HOH . O 4 HOH C 14 162 47 HOH HOH . O 4 HOH C 15 163 50 HOH HOH . O 4 HOH C 16 164 52 HOH HOH . O 4 HOH C 17 165 55 HOH HOH . P 4 HOH D 1 149 6 HOH HOH . P 4 HOH D 2 150 11 HOH HOH . P 4 HOH D 3 151 13 HOH HOH . P 4 HOH D 4 152 14 HOH HOH . P 4 HOH D 5 153 19 HOH HOH . P 4 HOH D 6 154 23 HOH HOH . P 4 HOH D 7 155 38 HOH HOH . P 4 HOH D 8 156 44 HOH HOH . P 4 HOH D 9 157 45 HOH HOH . P 4 HOH D 10 158 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 2 27.043 -1.523 27.385 1 28.13 ? CHA HEM 147 B 1 HETATM 2 C CHB HEM . . . G 2 30.953 1.132 28.471 1 28.13 ? CHB HEM 147 B 1 HETATM 3 C CHC HEM . . . G 2 28.944 2.324 32.73 1 28.13 ? CHC HEM 147 B 1 HETATM 4 C CHD HEM . . . G 2 25.114 -0.523 31.722 1 28.13 ? CHD HEM 147 B 1 HETATM 5 C C1A HEM . . . G 2 28.284 -0.887 27.286 1 28.13 ? C1A HEM 147 B 1 HETATM 6 C C2A HEM . . . G 2 29.18 -1.038 26.14 1 28.13 ? C2A HEM 147 B 1 HETATM 7 C C3A HEM . . . G 2 30.307 -0.32 26.48 1 28.13 ? C3A HEM 147 B 1 HETATM 8 C C4A HEM . . . G 2 30.12 0.196 27.839 1 28.13 ? C4A HEM 147 B 1 HETATM 9 C CMA HEM . . . G 2 31.502 -0.033 25.578 1 28.13 ? CMA HEM 147 B 1 HETATM 10 C CAA HEM . . . G 2 28.908 -1.953 24.915 1 28.13 ? CAA HEM 147 B 1 HETATM 11 C CBA HEM . . . G 2 30.059 -2.866 24.476 1 28.13 ? CBA HEM 147 B 1 HETATM 12 C CGA HEM . . . G 2 29.671 -3.859 23.377 1 28.13 ? CGA HEM 147 B 1 HETATM 13 O O1A HEM . . . G 2 30.583 -4.518 22.824 1 28.13 ? O1A HEM 147 B 1 HETATM 14 O O2A HEM . . . G 2 28.462 -3.989 23.07 1 28.13 ? O2A HEM 147 B 1 HETATM 15 C C1B HEM . . . G 2 30.661 1.829 29.659 1 28.13 ? C1B HEM 147 B 1 HETATM 16 C C2B HEM . . . G 2 31.536 2.819 30.275 1 28.13 ? C2B HEM 147 B 1 HETATM 17 C C3B HEM . . . G 2 31.003 3.156 31.489 1 28.13 ? C3B HEM 147 B 1 HETATM 18 C C4B HEM . . . G 2 29.785 2.344 31.614 1 28.13 ? C4B HEM 147 B 1 HETATM 19 C CMB HEM . . . G 2 32.805 3.379 29.645 1 28.13 ? CMB HEM 147 B 1 HETATM 20 C CAB HEM . . . G 2 31.447 4.142 32.391 1 28.13 ? CAB HEM 147 B 1 HETATM 21 C CBB HEM . . . G 2 32.756 4.242 32.981 1 28.13 ? CBB HEM 147 B 1 HETATM 22 C C1C HEM . . . G 2 27.745 1.615 32.84 1 28.13 ? C1C HEM 147 B 1 HETATM 23 C C2C HEM . . . G 2 26.907 1.623 34.013 1 28.13 ? C2C HEM 147 B 1 HETATM 24 C C3C HEM . . . G 2 25.866 0.749 33.769 1 28.13 ? C3C HEM 147 B 1 HETATM 25 C C4C HEM . . . G 2 26.04 0.283 32.41 1 28.13 ? C4C HEM 147 B 1 HETATM 26 C CMC HEM . . . G 2 27.192 2.439 35.271 1 28.13 ? CMC HEM 147 B 1 HETATM 27 C CAC HEM . . . G 2 24.88 0.255 34.62 1 28.13 ? CAC HEM 147 B 1 HETATM 28 C CBC HEM . . . G 2 24.385 0.879 35.816 1 28.13 ? CBC HEM 147 B 1 HETATM 29 C C1D HEM . . . G 2 25.282 -1.032 30.437 1 28.13 ? C1D HEM 147 B 1 HETATM 30 C C2D HEM . . . G 2 24.406 -1.998 29.789 1 28.13 ? C2D HEM 147 B 1 HETATM 31 C C3D HEM . . . G 2 24.994 -2.368 28.618 1 28.13 ? C3D HEM 147 B 1 HETATM 32 C C4D HEM . . . G 2 26.188 -1.538 28.498 1 28.13 ? C4D HEM 147 B 1 HETATM 33 C CMD HEM . . . G 2 23.091 -2.559 30.33 1 28.13 ? CMD HEM 147 B 1 HETATM 34 C CAD HEM . . . G 2 24.596 -3.593 27.778 1 28.13 ? CAD HEM 147 B 1 HETATM 35 C CBD HEM . . . G 2 25.495 -4.82 27.982 1 28.13 ? CBD HEM 147 B 1 HETATM 36 C CGD HEM . . . G 2 24.982 -6.065 27.265 1 28.13 ? CGD HEM 147 B 1 HETATM 37 O O1D HEM . . . G 2 23.846 -6.502 27.557 1 28.13 ? O1D HEM 147 B 1 HETATM 38 O O2D HEM . . . G 2 25.717 -6.607 26.411 1 28.13 ? O2D HEM 147 B 1 HETATM 39 N NA HEM . . . G 2 28.874 -0.173 28.325 1 28.13 ? NA HEM 147 B 1 HETATM 40 N NB HEM . . . G 2 29.577 1.569 30.477 1 28.13 ? NB HEM 147 B 1 HETATM 41 N NC HEM . . . G 2 27.224 0.764 31.883 1 28.13 ? NC HEM 147 B 1 HETATM 42 N ND HEM . . . G 2 26.396 -0.802 29.659 1 28.13 ? ND HEM 147 B 1 HETATM 43 FE FE HEM . . . G 2 28.009 0.335 30.107 1 28.13 ? FE HEM 147 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #