data_3UHL # _model_server_result.job_id mb8E_Gr1WYgwNKMdFZZNqQ _model_server_result.datetime_utc '2024-10-10 13:24:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uhl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":101}' # _entry.id 3UHL # _exptl.entry_id 3UHL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 770.983 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UHL _cell.length_a 63.789 _cell.length_b 63.789 _cell.length_c 213.664 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UHL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,J,K 1 1 C,D,G,H,I,L,M 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C35 H68 N11 O8 1' _chem_comp.formula_weight 770.983 _chem_comp.id 2NC _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2S)-2-[(N-acetyl-L-threonyl-L-isoleucyl)amino]hexyl}-L-norleucyl-L-glutaminyl-N~5~-[amino(iminio)methyl]-L-ornithinamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms p2/NC # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O 2NC doub 1 n n C CH3 2NC sing 2 n n CH3 H1 2NC sing 3 n n CH3 H2 2NC sing 4 n n CH3 H3 2NC sing 5 n n N CA 2NC sing 6 n n N H 2NC sing 7 n n CA C1 2NC sing 8 n n CA CB 2NC sing 9 n n CA HA 2NC sing 10 n n C1 O1 2NC doub 11 n n CB OG1 2NC sing 12 n n CB CG2 2NC sing 13 n n CB HB 2NC sing 14 n n OG1 HG1 2NC sing 15 n n CG2 HG21 2NC sing 16 n n CG2 HG22 2NC sing 17 n n CG2 HG23 2NC sing 18 n n N1 CA1 2NC sing 19 n n N1 H4 2NC sing 20 n n CA1 C2 2NC sing 21 n n CA1 CB1 2NC sing 22 n n CA1 HA1 2NC sing 23 n n C2 O2 2NC doub 24 n n CB1 CG1 2NC sing 25 n n CB1 CG21 2NC sing 26 n n CB1 HB1 2NC sing 27 n n CG1 CD1 2NC sing 28 n n CG1 HG12 2NC sing 29 n n CG1 HG13 2NC sing 30 n n CG21 HG24 2NC sing 31 n n CG21 HG25 2NC sing 32 n n CG21 HG26 2NC sing 33 n n CD1 HD11 2NC sing 34 n n CD1 HD12 2NC sing 35 n n CD1 HD13 2NC sing 36 n n N2 CA2 2NC sing 37 n n N2 H5 2NC sing 38 n n CA2 C3 2NC sing 39 n n CA2 CB2 2NC sing 40 n n CA2 HA2 2NC sing 41 n n CB2 CG 2NC sing 42 n n CB2 HB2 2NC sing 43 n n CB2 HB3 2NC sing 44 n n CG CD 2NC sing 45 n n CG HG2 2NC sing 46 n n CG HG3 2NC sing 47 n n CD CE 2NC sing 48 n n CD HD2 2NC sing 49 n n CD HD3 2NC sing 50 n n CE HE1 2NC sing 51 n n CE HE2 2NC sing 52 n n CE HE3 2NC sing 53 n n N3 CA3 2NC sing 54 n n N3 H6 2NC sing 55 n n CA3 C4 2NC sing 56 n n CA3 CB3 2NC sing 57 n n CA3 HA3 2NC sing 58 n n C4 O3 2NC doub 59 n n CB3 CG3 2NC sing 60 n n CB3 HB21 2NC sing 61 n n CB3 HB31 2NC sing 62 n n CG3 CD2 2NC sing 63 n n CG3 HG27 2NC sing 64 n n CG3 HG31 2NC sing 65 n n CD2 CE1 2NC sing 66 n n CD2 HD21 2NC sing 67 n n CD2 HD31 2NC sing 68 n n CE1 HE11 2NC sing 69 n n CE1 HE21 2NC sing 70 n n CE1 HE31 2NC sing 71 n n N4 CA4 2NC sing 72 n n N4 H7 2NC sing 73 n n CA4 C5 2NC sing 74 n n CA4 CB4 2NC sing 75 n n CA4 HA4 2NC sing 76 n n C5 O4 2NC doub 77 n n CB4 CG4 2NC sing 78 n n CB4 HB22 2NC sing 79 n n CB4 HB32 2NC sing 80 n n CG4 CD3 2NC sing 81 n n CG4 HG28 2NC sing 82 n n CG4 HG32 2NC sing 83 n n CD3 OE1 2NC doub 84 n n CD3 NE2 2NC sing 85 n n NE2 HE22 2NC sing 86 n n NE2 HE23 2NC sing 87 n n N5 CA5 2NC sing 88 n n N5 H8 2NC sing 89 n n CA5 C6 2NC sing 90 n n CA5 CB5 2NC sing 91 n n CA5 HA5 2NC sing 92 n n C6 O5 2NC doub 93 n n CB5 CG5 2NC sing 94 n n CB5 HB23 2NC sing 95 n n CB5 HB33 2NC sing 96 n n CG5 CD4 2NC sing 97 n n CG5 HG29 2NC sing 98 n n CG5 HG33 2NC sing 99 n n CD4 NE 2NC sing 100 n n CD4 HD22 2NC sing 101 n n CD4 HD32 2NC sing 102 n n NE CZ 2NC sing 103 n n NE HE 2NC sing 104 n n CZ NH1 2NC sing 105 n n CZ NH2 2NC doub 106 n n NH1 HH11 2NC sing 107 n n NH1 HH12 2NC sing 108 n n NH2 HH21 2NC sing 109 n n NH2 HH22 2NC sing 110 n n N6 HN1 2NC sing 111 n n N6 HN2 2NC sing 112 n n C N 2NC sing 113 n n C1 N1 2NC sing 114 n n C2 N2 2NC sing 115 n n C3 N3 2NC sing 116 n n C4 N4 2NC sing 117 n n C5 N5 2NC sing 118 n n C3 HC31 2NC sing 119 n n C3 HC32 2NC sing 120 n n C6 N6 2NC sing 121 n n # _atom_sites.entry_id 3UHL _atom_sites.fract_transf_matrix[1][1] 0.015677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015677 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00468 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 101 402 SO4 SO4 . F 2 SO4 A 1 102 403 SO4 SO4 . G 3 2NC C 1 101 300 2NC 2NC . H 2 SO4 C 1 102 401 SO4 SO4 . I 2 SO4 D 1 101 404 SO4 SO4 . J 4 HOH A 1 201 505 HOH HOH . J 4 HOH A 2 202 510 HOH HOH . J 4 HOH A 3 203 514 HOH HOH . J 4 HOH A 4 204 515 HOH HOH . J 4 HOH A 5 205 517 HOH HOH . J 4 HOH A 6 206 520 HOH HOH . J 4 HOH A 7 207 522 HOH HOH . J 4 HOH A 8 208 526 HOH HOH . J 4 HOH A 9 209 529 HOH HOH . J 4 HOH A 10 210 530 HOH HOH . J 4 HOH A 11 211 533 HOH HOH . J 4 HOH A 12 212 537 HOH HOH . J 4 HOH A 13 213 539 HOH HOH . J 4 HOH A 14 214 543 HOH HOH . J 4 HOH A 15 215 545 HOH HOH . J 4 HOH A 16 216 554 HOH HOH . J 4 HOH A 17 217 558 HOH HOH . J 4 HOH A 18 218 563 HOH HOH . J 4 HOH A 19 219 568 HOH HOH . J 4 HOH A 20 220 575 HOH HOH . J 4 HOH A 21 221 576 HOH HOH . J 4 HOH A 22 222 577 HOH HOH . J 4 HOH A 23 223 584 HOH HOH . J 4 HOH A 24 224 586 HOH HOH . J 4 HOH A 25 225 587 HOH HOH . J 4 HOH A 26 226 589 HOH HOH . J 4 HOH A 27 227 590 HOH HOH . J 4 HOH A 28 228 591 HOH HOH . J 4 HOH A 29 229 596 HOH HOH . J 4 HOH A 30 230 597 HOH HOH . J 4 HOH A 31 231 598 HOH HOH . J 4 HOH A 32 232 599 HOH HOH . K 4 HOH B 1 501 501 HOH HOH . K 4 HOH B 2 502 502 HOH HOH . K 4 HOH B 3 503 503 HOH HOH . K 4 HOH B 4 504 504 HOH HOH . K 4 HOH B 5 505 506 HOH HOH . K 4 HOH B 6 506 509 HOH HOH . K 4 HOH B 7 507 511 HOH HOH . K 4 HOH B 8 508 512 HOH HOH . K 4 HOH B 9 509 513 HOH HOH . K 4 HOH B 10 510 518 HOH HOH . K 4 HOH B 11 511 523 HOH HOH . K 4 HOH B 12 512 527 HOH HOH . K 4 HOH B 13 513 540 HOH HOH . K 4 HOH B 14 514 541 HOH HOH . K 4 HOH B 15 515 544 HOH HOH . K 4 HOH B 16 516 547 HOH HOH . K 4 HOH B 17 517 552 HOH HOH . K 4 HOH B 18 518 553 HOH HOH . K 4 HOH B 19 519 555 HOH HOH . K 4 HOH B 20 520 559 HOH HOH . K 4 HOH B 21 521 562 HOH HOH . K 4 HOH B 22 522 567 HOH HOH . K 4 HOH B 23 523 571 HOH HOH . K 4 HOH B 24 524 579 HOH HOH . K 4 HOH B 25 525 580 HOH HOH . K 4 HOH B 26 526 581 HOH HOH . K 4 HOH B 27 527 582 HOH HOH . K 4 HOH B 28 528 585 HOH HOH . K 4 HOH B 29 529 595 HOH HOH . K 4 HOH B 30 530 600 HOH HOH . L 4 HOH C 1 201 508 HOH HOH . L 4 HOH C 2 202 519 HOH HOH . L 4 HOH C 3 203 521 HOH HOH . L 4 HOH C 4 204 524 HOH HOH . L 4 HOH C 5 205 536 HOH HOH . L 4 HOH C 6 206 538 HOH HOH . L 4 HOH C 7 207 546 HOH HOH . L 4 HOH C 8 208 549 HOH HOH . L 4 HOH C 9 209 557 HOH HOH . L 4 HOH C 10 210 583 HOH HOH . L 4 HOH C 11 211 588 HOH HOH . L 4 HOH C 12 212 592 HOH HOH . L 4 HOH C 13 213 593 HOH HOH . L 4 HOH C 14 214 594 HOH HOH . L 4 HOH C 15 215 601 HOH HOH . L 4 HOH C 16 216 602 HOH HOH . L 4 HOH C 17 217 603 HOH HOH . L 4 HOH C 18 218 604 HOH HOH . L 4 HOH C 19 219 605 HOH HOH . M 4 HOH D 1 201 507 HOH HOH . M 4 HOH D 2 202 516 HOH HOH . M 4 HOH D 3 203 525 HOH HOH . M 4 HOH D 4 204 528 HOH HOH . M 4 HOH D 5 205 531 HOH HOH . M 4 HOH D 6 206 532 HOH HOH . M 4 HOH D 7 207 534 HOH HOH . M 4 HOH D 8 208 535 HOH HOH . M 4 HOH D 9 209 542 HOH HOH . M 4 HOH D 10 210 548 HOH HOH . M 4 HOH D 11 211 550 HOH HOH . M 4 HOH D 12 212 551 HOH HOH . M 4 HOH D 13 213 556 HOH HOH . M 4 HOH D 14 214 560 HOH HOH . M 4 HOH D 15 215 561 HOH HOH . M 4 HOH D 16 216 564 HOH HOH . M 4 HOH D 17 217 565 HOH HOH . M 4 HOH D 18 218 566 HOH HOH . M 4 HOH D 19 219 569 HOH HOH . M 4 HOH D 20 220 570 HOH HOH . M 4 HOH D 21 221 572 HOH HOH . M 4 HOH D 22 222 573 HOH HOH . M 4 HOH D 23 223 574 HOH HOH . M 4 HOH D 24 224 578 HOH HOH . M 4 HOH D 25 225 606 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C 2NC . . . G 3 4.254 -13.48 -23.802 0.7 54.74 ? C 2NC 101 C 1 HETATM 2 O O 2NC . . . G 3 4.632 -14.658 -23.651 0.7 54.39 ? O 2NC 101 C 1 HETATM 3 C CH3 2NC . . . G 3 3.421 -12.841 -22.741 0.7 56.28 ? CH3 2NC 101 C 1 HETATM 4 N N 2NC . . . G 3 4.732 -12.617 -24.725 0.7 53.81 ? N 2NC 101 C 1 HETATM 5 C CA 2NC . . . G 3 6.175 -12.32 -24.801 0.7 53.35 ? CA 2NC 101 C 1 HETATM 6 C C1 2NC . . . G 3 6.603 -11.422 -23.645 0.7 54.01 ? C1 2NC 101 C 1 HETATM 7 O O1 2NC . . . G 3 7.36 -11.849 -22.753 0.7 53.94 ? O1 2NC 101 C 1 HETATM 8 C CB 2NC . . . G 3 6.692 -11.666 -26.165 0.7 52.3 ? CB 2NC 101 C 1 HETATM 9 O OG1 2NC . . . G 3 5.695 -11.674 -27.208 0.7 51.77 ? OG1 2NC 101 C 1 HETATM 10 C CG2 2NC . . . G 3 7.997 -12.359 -26.649 0.7 51.12 ? CG2 2NC 101 C 1 HETATM 11 N N1 2NC . . . G 3 6.14 -10.168 -23.675 1 54.39 ? N1 2NC 101 C 1 HETATM 12 C CA1 2NC . . . G 3 6.61 -9.189 -22.701 1 53.86 ? CA1 2NC 101 C 1 HETATM 13 C C2 2NC . . . G 3 5.485 -8.357 -22.021 1 55.37 ? C2 2NC 101 C 1 HETATM 14 O O2 2NC . . . G 3 4.759 -7.525 -22.644 1 54.91 ? O2 2NC 101 C 1 HETATM 15 C CB1 2NC . . . G 3 7.784 -8.34 -23.25 1 52.75 ? CB1 2NC 101 C 1 HETATM 16 C CG1 2NC . . . G 3 8.789 -9.209 -24.049 1 51.01 ? CG1 2NC 101 C 1 HETATM 17 C CG21 2NC . . . G 3 8.441 -7.537 -22.104 1 54.52 ? CG21 2NC 101 C 1 HETATM 18 C CD1 2NC . . . G 3 9.874 -10.015 -23.278 1 45.53 ? CD1 2NC 101 C 1 HETATM 19 N N2 2NC . . . G 3 5.374 -8.604 -20.708 1 55.76 ? N2 2NC 101 C 1 HETATM 20 C CA2 2NC . . . G 3 4.156 -8.3 -19.954 1 55.37 ? CA2 2NC 101 C 1 HETATM 21 C C3 2NC . . . G 3 4.335 -7.354 -18.769 1 54.15 ? C3 2NC 101 C 1 HETATM 22 C CB2 2NC . . . G 3 3.417 -9.602 -19.568 1 56.45 ? CB2 2NC 101 C 1 HETATM 23 C CG 2NC . . . G 3 2.926 -10.457 -20.759 1 55.72 ? CG 2NC 101 C 1 HETATM 24 C CD 2NC . . . G 3 2.354 -9.603 -21.901 1 56.18 ? CD 2NC 101 C 1 HETATM 25 C CE 2NC . . . G 3 0.992 -8.994 -21.557 1 59.28 ? CE 2NC 101 C 1 HETATM 26 N N3 2NC . . . G 3 4.571 -6.114 -19.18 1 50.99 ? N3 2NC 101 C 1 HETATM 27 C CA3 2NC . . . G 3 4.186 -5.014 -18.383 1 50.08 ? CA3 2NC 101 C 1 HETATM 28 C C4 2NC . . . G 3 2.713 -4.704 -18.724 1 50.26 ? C4 2NC 101 C 1 HETATM 29 O O3 2NC . . . G 3 2.282 -4.681 -19.873 1 48.78 ? O3 2NC 101 C 1 HETATM 30 C CB3 2NC . . . G 3 5.106 -3.82 -18.596 1 49.22 ? CB3 2NC 101 C 1 HETATM 31 C CG3 2NC . . . G 3 4.768 -2.957 -19.825 1 47 ? CG3 2NC 101 C 1 HETATM 32 C CD2 2NC . . . G 3 5.866 -3.054 -20.78 1 40.02 ? CD2 2NC 101 C 1 HETATM 33 C CE1 2NC . . . G 3 6.836 -1.971 -20.456 1 42.05 ? CE1 2NC 101 C 1 HETATM 34 N N4 2NC . . . G 3 1.916 -4.49 -17.706 1 51.86 ? N4 2NC 101 C 1 HETATM 35 C CA4 2NC . . . G 3 0.652 -3.859 -17.946 1 52.86 ? CA4 2NC 101 C 1 HETATM 36 C C5 2NC . . . G 3 0.572 -2.633 -17.062 1 54.95 ? C5 2NC 101 C 1 HETATM 37 O O4 2NC . . . G 3 0.748 -2.697 -15.829 1 55.94 ? O4 2NC 101 C 1 HETATM 38 C CB4 2NC . . . G 3 -0.457 -4.847 -17.686 1 54.23 ? CB4 2NC 101 C 1 HETATM 39 C CG4 2NC . . . G 3 -1.752 -4.494 -18.313 1 56.37 ? CG4 2NC 101 C 1 HETATM 40 C CD3 2NC . . . G 3 -2.9 -5.125 -17.573 1 60.7 ? CD3 2NC 101 C 1 HETATM 41 O OE1 2NC . . . G 3 -3.581 -5.997 -18.093 1 62.69 ? OE1 2NC 101 C 1 HETATM 42 N NE2 2NC . . . G 3 -3.105 -4.704 -16.334 1 65.51 ? NE2 2NC 101 C 1 HETATM 43 N N5 2NC . . . G 3 0.318 -1.504 -17.718 1 56.2 ? N5 2NC 101 C 1 HETATM 44 C CA5 2NC . . . G 3 0.298 -0.148 -17.115 1 57.13 ? CA5 2NC 101 C 1 HETATM 45 C C6 2NC . . . G 3 1.702 0.369 -16.772 1 56.97 ? C6 2NC 101 C 1 HETATM 46 O O5 2NC . . . G 3 2.684 -0.397 -16.747 1 56.15 ? O5 2NC 101 C 1 HETATM 47 C CB5 2NC . . . G 3 -0.676 -0.039 -15.945 1 59.31 ? CB5 2NC 101 C 1 HETATM 48 C CG5 2NC . . . G 3 -2.036 0.509 -16.332 1 60.34 ? CG5 2NC 101 C 1 HETATM 49 C CD4 2NC . . . G 3 -2.677 1.206 -15.145 1 61.39 ? CD4 2NC 101 C 1 HETATM 50 N NE 2NC . . . G 3 -2.577 2.662 -15.252 1 58.99 ? NE 2NC 101 C 1 HETATM 51 C CZ 2NC . . . G 3 -1.453 3.379 -15.167 1 58.97 ? CZ 2NC 101 C 1 HETATM 52 N NH1 2NC . . . G 3 -0.275 2.803 -14.975 1 57.43 ? NH1 2NC 101 C 1 HETATM 53 N NH2 2NC . . . G 3 -1.506 4.701 -15.293 1 62.67 ? NH2 2NC 101 C 1 HETATM 54 N N6 2NC . . . G 3 1.896 1.567 -16.576 1 57.97 ? N6 2NC 101 C 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #