data_3UHU # _model_server_result.job_id iGTjodk1_L7pEBMNThoTlg _model_server_result.datetime_utc '2024-10-14 07:29:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uhu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":147}' # _entry.id 3UHU # _exptl.entry_id 3UHU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UHU _cell.length_a 91.71 _cell.length_b 44.47 _cell.length_c 144.02 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UHU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 101 A HIS 101 1_555 C FE HEM . A HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 B NE2 HIS 101 B HIS 101 1_555 D FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3UHU _atom_sites.fract_transf_matrix[1][1] 0.010904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022487 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006943 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 147 147 HEM HEM . D 2 HEM B 1 147 147 HEM HEM . E 3 HOH A 1 148 6 HOH HOH . E 3 HOH A 2 149 7 HOH HOH . E 3 HOH A 3 150 150 HOH HOH . E 3 HOH A 4 151 151 HOH HOH . E 3 HOH A 5 152 8 HOH HOH . E 3 HOH A 6 153 9 HOH HOH . E 3 HOH A 7 154 12 HOH HOH . E 3 HOH A 8 155 15 HOH HOH . E 3 HOH A 9 156 17 HOH HOH . E 3 HOH A 10 157 23 HOH HOH . E 3 HOH A 11 158 25 HOH HOH . E 3 HOH A 12 159 26 HOH HOH . E 3 HOH A 13 160 27 HOH HOH . E 3 HOH A 14 161 28 HOH HOH . E 3 HOH A 15 162 35 HOH HOH . E 3 HOH A 16 163 37 HOH HOH . E 3 HOH A 17 164 38 HOH HOH . E 3 HOH A 18 165 41 HOH HOH . E 3 HOH A 19 166 43 HOH HOH . E 3 HOH A 20 167 46 HOH HOH . E 3 HOH A 21 168 47 HOH HOH . E 3 HOH A 22 169 51 HOH HOH . E 3 HOH A 23 170 52 HOH HOH . E 3 HOH A 24 171 54 HOH HOH . E 3 HOH A 25 172 56 HOH HOH . E 3 HOH A 26 173 57 HOH HOH . E 3 HOH A 27 174 58 HOH HOH . E 3 HOH A 28 175 59 HOH HOH . E 3 HOH A 29 176 60 HOH HOH . E 3 HOH A 30 177 61 HOH HOH . E 3 HOH A 31 178 64 HOH HOH . E 3 HOH A 32 179 65 HOH HOH . E 3 HOH A 33 180 67 HOH HOH . E 3 HOH A 34 181 68 HOH HOH . E 3 HOH A 35 182 70 HOH HOH . E 3 HOH A 36 183 72 HOH HOH . E 3 HOH A 37 184 73 HOH HOH . E 3 HOH A 38 185 74 HOH HOH . E 3 HOH A 39 186 77 HOH HOH . E 3 HOH A 40 187 80 HOH HOH . E 3 HOH A 41 188 81 HOH HOH . E 3 HOH A 42 189 82 HOH HOH . E 3 HOH A 43 190 86 HOH HOH . E 3 HOH A 44 191 91 HOH HOH . E 3 HOH A 45 192 93 HOH HOH . E 3 HOH A 46 193 94 HOH HOH . E 3 HOH A 47 194 95 HOH HOH . E 3 HOH A 48 195 98 HOH HOH . E 3 HOH A 49 196 99 HOH HOH . E 3 HOH A 50 197 100 HOH HOH . E 3 HOH A 51 198 101 HOH HOH . E 3 HOH A 52 199 104 HOH HOH . E 3 HOH A 53 200 106 HOH HOH . E 3 HOH A 54 201 108 HOH HOH . E 3 HOH A 55 202 110 HOH HOH . E 3 HOH A 56 203 116 HOH HOH . E 3 HOH A 57 204 118 HOH HOH . E 3 HOH A 58 205 119 HOH HOH . E 3 HOH A 59 206 120 HOH HOH . E 3 HOH A 60 207 126 HOH HOH . E 3 HOH A 61 208 128 HOH HOH . E 3 HOH A 62 209 129 HOH HOH . E 3 HOH A 63 210 130 HOH HOH . E 3 HOH A 64 211 132 HOH HOH . E 3 HOH A 65 212 133 HOH HOH . E 3 HOH A 66 213 135 HOH HOH . E 3 HOH A 67 214 137 HOH HOH . E 3 HOH A 68 215 139 HOH HOH . E 3 HOH A 69 216 144 HOH HOH . E 3 HOH A 70 217 145 HOH HOH . F 3 HOH B 1 148 148 HOH HOH . F 3 HOH B 2 149 149 HOH HOH . F 3 HOH B 3 150 1 HOH HOH . F 3 HOH B 4 151 2 HOH HOH . F 3 HOH B 5 152 3 HOH HOH . F 3 HOH B 6 153 4 HOH HOH . F 3 HOH B 7 154 5 HOH HOH . F 3 HOH B 8 155 10 HOH HOH . F 3 HOH B 9 156 11 HOH HOH . F 3 HOH B 10 157 13 HOH HOH . F 3 HOH B 11 158 14 HOH HOH . F 3 HOH B 12 159 16 HOH HOH . F 3 HOH B 13 160 18 HOH HOH . F 3 HOH B 14 161 19 HOH HOH . F 3 HOH B 15 162 20 HOH HOH . F 3 HOH B 16 163 21 HOH HOH . F 3 HOH B 17 164 22 HOH HOH . F 3 HOH B 18 165 24 HOH HOH . F 3 HOH B 19 166 29 HOH HOH . F 3 HOH B 20 167 30 HOH HOH . F 3 HOH B 21 168 31 HOH HOH . F 3 HOH B 22 169 32 HOH HOH . F 3 HOH B 23 170 33 HOH HOH . F 3 HOH B 24 171 34 HOH HOH . F 3 HOH B 25 172 36 HOH HOH . F 3 HOH B 26 173 39 HOH HOH . F 3 HOH B 27 174 40 HOH HOH . F 3 HOH B 28 175 42 HOH HOH . F 3 HOH B 29 176 44 HOH HOH . F 3 HOH B 30 177 45 HOH HOH . F 3 HOH B 31 178 48 HOH HOH . F 3 HOH B 32 179 49 HOH HOH . F 3 HOH B 33 180 50 HOH HOH . F 3 HOH B 34 181 53 HOH HOH . F 3 HOH B 35 182 55 HOH HOH . F 3 HOH B 36 183 62 HOH HOH . F 3 HOH B 37 184 63 HOH HOH . F 3 HOH B 38 185 66 HOH HOH . F 3 HOH B 39 186 69 HOH HOH . F 3 HOH B 40 187 71 HOH HOH . F 3 HOH B 41 188 75 HOH HOH . F 3 HOH B 42 189 76 HOH HOH . F 3 HOH B 43 190 78 HOH HOH . F 3 HOH B 44 191 79 HOH HOH . F 3 HOH B 45 192 83 HOH HOH . F 3 HOH B 46 193 84 HOH HOH . F 3 HOH B 47 194 85 HOH HOH . F 3 HOH B 48 195 87 HOH HOH . F 3 HOH B 49 196 88 HOH HOH . F 3 HOH B 50 197 89 HOH HOH . F 3 HOH B 51 198 90 HOH HOH . F 3 HOH B 52 199 92 HOH HOH . F 3 HOH B 53 200 96 HOH HOH . F 3 HOH B 54 201 97 HOH HOH . F 3 HOH B 55 202 102 HOH HOH . F 3 HOH B 56 203 103 HOH HOH . F 3 HOH B 57 204 105 HOH HOH . F 3 HOH B 58 205 107 HOH HOH . F 3 HOH B 59 206 109 HOH HOH . F 3 HOH B 60 207 111 HOH HOH . F 3 HOH B 61 208 112 HOH HOH . F 3 HOH B 62 209 113 HOH HOH . F 3 HOH B 63 210 114 HOH HOH . F 3 HOH B 64 211 115 HOH HOH . F 3 HOH B 65 212 117 HOH HOH . F 3 HOH B 66 213 121 HOH HOH . F 3 HOH B 67 214 122 HOH HOH . F 3 HOH B 68 215 123 HOH HOH . F 3 HOH B 69 216 124 HOH HOH . F 3 HOH B 70 217 125 HOH HOH . F 3 HOH B 71 218 127 HOH HOH . F 3 HOH B 72 219 131 HOH HOH . F 3 HOH B 73 220 134 HOH HOH . F 3 HOH B 74 221 136 HOH HOH . F 3 HOH B 75 222 138 HOH HOH . F 3 HOH B 76 223 140 HOH HOH . F 3 HOH B 77 224 141 HOH HOH . F 3 HOH B 78 225 142 HOH HOH . F 3 HOH B 79 226 143 HOH HOH . F 3 HOH B 80 227 146 HOH HOH . F 3 HOH B 81 228 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 16.677 9.753 17.522 1 15.61 ? CHA HEM 147 A 1 HETATM 2 C CHB HEM . . . C 2 14.741 8.65 21.77 1 15.61 ? CHB HEM 147 A 1 HETATM 3 C CHC HEM . . . C 2 18.997 6.892 23.224 1 15.61 ? CHC HEM 147 A 1 HETATM 4 C CHD HEM . . . C 2 20.853 7.689 18.84 1 15.61 ? CHD HEM 147 A 1 HETATM 5 C C1A HEM . . . C 2 15.731 9.438 18.483 1 15.61 ? C1A HEM 147 A 1 HETATM 6 C C2A HEM . . . C 2 14.343 9.843 18.432 1 15.61 ? C2A HEM 147 A 1 HETATM 7 C C3A HEM . . . C 2 13.809 9.551 19.635 1 15.61 ? C3A HEM 147 A 1 HETATM 8 C C4A HEM . . . C 2 14.861 8.955 20.423 1 15.61 ? C4A HEM 147 A 1 HETATM 9 C CMA HEM . . . C 2 12.362 9.799 20.046 1 15.61 ? CMA HEM 147 A 1 HETATM 10 C CAA HEM . . . C 2 13.552 10.406 17.256 1 15.61 ? CAA HEM 147 A 1 HETATM 11 C CBA HEM . . . C 2 12.913 9.33 16.383 1 15.61 ? CBA HEM 147 A 1 HETATM 12 C CGA HEM . . . C 2 13.934 8.529 15.595 1 15.61 ? CGA HEM 147 A 1 HETATM 13 O O1A HEM . . . C 2 14.573 9.113 14.696 1 15.61 ? O1A HEM 147 A 1 HETATM 14 O O2A HEM . . . C 2 14.102 7.322 15.875 1 15.61 ? O2A HEM 147 A 1 HETATM 15 C C1B HEM . . . C 2 15.726 8.033 22.517 1 15.61 ? C1B HEM 147 A 1 HETATM 16 C C2B HEM . . . C 2 15.544 7.62 23.9 1 15.61 ? C2B HEM 147 A 1 HETATM 17 C C3B HEM . . . C 2 16.738 7.116 24.328 1 15.61 ? C3B HEM 147 A 1 HETATM 18 C C4B HEM . . . C 2 17.64 7.21 23.175 1 15.61 ? C4B HEM 147 A 1 HETATM 19 C CMB HEM . . . C 2 14.22 7.633 24.662 1 15.61 ? CMB HEM 147 A 1 HETATM 20 C CAB HEM . . . C 2 17.082 6.572 25.574 1 15.61 ? CAB HEM 147 A 1 HETATM 21 C CBB HEM . . . C 2 16.457 6.81 26.856 1 15.61 ? CBB HEM 147 A 1 HETATM 22 C C1C HEM . . . C 2 19.855 6.931 22.143 1 15.61 ? C1C HEM 147 A 1 HETATM 23 C C2C HEM . . . C 2 21.252 6.544 22.211 1 15.61 ? C2C HEM 147 A 1 HETATM 24 C C3C HEM . . . C 2 21.783 6.707 20.966 1 15.61 ? C3C HEM 147 A 1 HETATM 25 C C4C HEM . . . C 2 20.687 7.21 20.136 1 15.61 ? C4C HEM 147 A 1 HETATM 26 C CMC HEM . . . C 2 21.982 6.031 23.455 1 15.61 ? CMC HEM 147 A 1 HETATM 27 C CAC HEM . . . C 2 23.077 6.403 20.506 1 15.61 ? CAC HEM 147 A 1 HETATM 28 C CBC HEM . . . C 2 24.304 6.284 21.26 1 15.61 ? CBC HEM 147 A 1 HETATM 29 C C1D HEM . . . C 2 19.874 8.369 18.122 1 15.61 ? C1D HEM 147 A 1 HETATM 30 C C2D HEM . . . C 2 20.156 9.156 16.937 1 15.61 ? C2D HEM 147 A 1 HETATM 31 C C3D HEM . . . C 2 19.013 9.796 16.61 1 15.61 ? C3D HEM 147 A 1 HETATM 32 C C4D HEM . . . C 2 18.012 9.377 17.576 1 15.61 ? C4D HEM 147 A 1 HETATM 33 C CMD HEM . . . C 2 21.5 9.313 16.226 1 15.61 ? CMD HEM 147 A 1 HETATM 34 C CAD HEM . . . C 2 18.842 10.827 15.498 1 15.61 ? CAD HEM 147 A 1 HETATM 35 C CBD HEM . . . C 2 19.103 12.259 15.956 1 15.61 ? CBD HEM 147 A 1 HETATM 36 C CGD HEM . . . C 2 18.849 13.283 14.861 1 15.61 ? CGD HEM 147 A 1 HETATM 37 O O1D HEM . . . C 2 19.531 13.23 13.818 1 15.61 ? O1D HEM 147 A 1 HETATM 38 O O2D HEM . . . C 2 17.964 14.146 15.044 1 15.61 ? O2D HEM 147 A 1 HETATM 39 N NA HEM . . . C 2 16.021 8.797 19.676 1 15.61 ? NA HEM 147 A 1 HETATM 40 N NB HEM . . . C 2 16.992 7.704 22.04 1 15.61 ? NB HEM 147 A 1 HETATM 41 N NC HEM . . . C 2 19.489 7.301 20.853 1 15.61 ? NC HEM 147 A 1 HETATM 42 N ND HEM . . . C 2 18.556 8.538 18.537 1 15.61 ? ND HEM 147 A 1 HETATM 43 FE FE HEM . . . C 2 17.676 7.773 20.156 1 15.61 ? FE HEM 147 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #