data_3UIM # _model_server_result.job_id Ui35XCtsLwbS6o0rqQoLKw _model_server_result.datetime_utc '2024-11-08 16:13:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3UIM # _exptl.entry_id 3UIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.72 _cell.angle_gamma 90 _cell.entry_id 3UIM _cell.length_a 70.11 _cell.length_b 74.7 _cell.length_c 71.924 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 32 A PHE 289 1_555 A N SEP 33 A SEP 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 A C SEP 33 A SEP 290 1_555 A N ASN 34 A ASN 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C GLY 54 A GLY 311 1_555 A N TPO 55 A TPO 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale4 A C TPO 55 A TPO 312 1_555 A N LEU 56 A LEU 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale5 A C ASP 188 A ASP 445 1_555 A N TPO 189 A TPO 446 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale6 A C TPO 189 A TPO 446 1_555 A N HIS 190 A HIS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C VAL 191 A VAL 448 1_555 A N TPO 192 A TPO 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C TPO 192 A TPO 449 1_555 A N TPO 193 A TPO 450 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 A C TPO 193 A TPO 450 1_555 A N ALA 194 A ALA 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C GLY 197 A GLY 454 1_555 A N TPO 198 A TPO 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C TPO 198 A TPO 455 1_555 A N ILE 199 A ILE 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 3UIM _atom_sites.fract_transf_matrix[1][1] 0.014263 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000927 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013387 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013933 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 1000 1000 ANP ANP . C 3 HOH A 1 1 1 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 9 9 HOH HOH . C 3 HOH A 5 10 10 HOH HOH . C 3 HOH A 6 11 11 HOH HOH . C 3 HOH A 7 14 14 HOH HOH . C 3 HOH A 8 18 18 HOH HOH . C 3 HOH A 9 21 21 HOH HOH . C 3 HOH A 10 23 23 HOH HOH . C 3 HOH A 11 24 24 HOH HOH . C 3 HOH A 12 26 26 HOH HOH . C 3 HOH A 13 27 27 HOH HOH . C 3 HOH A 14 28 28 HOH HOH . C 3 HOH A 15 34 34 HOH HOH . C 3 HOH A 16 35 35 HOH HOH . C 3 HOH A 17 36 36 HOH HOH . C 3 HOH A 18 37 37 HOH HOH . C 3 HOH A 19 38 38 HOH HOH . C 3 HOH A 20 39 39 HOH HOH . C 3 HOH A 21 40 40 HOH HOH . C 3 HOH A 22 41 41 HOH HOH . C 3 HOH A 23 42 42 HOH HOH . C 3 HOH A 24 43 43 HOH HOH . C 3 HOH A 25 45 45 HOH HOH . C 3 HOH A 26 46 46 HOH HOH . C 3 HOH A 27 48 48 HOH HOH . C 3 HOH A 28 50 50 HOH HOH . C 3 HOH A 29 52 52 HOH HOH . C 3 HOH A 30 53 53 HOH HOH . C 3 HOH A 31 55 55 HOH HOH . C 3 HOH A 32 59 59 HOH HOH . C 3 HOH A 33 60 60 HOH HOH . C 3 HOH A 34 61 61 HOH HOH . C 3 HOH A 35 62 62 HOH HOH . C 3 HOH A 36 63 63 HOH HOH . C 3 HOH A 37 64 64 HOH HOH . C 3 HOH A 38 66 66 HOH HOH . C 3 HOH A 39 67 67 HOH HOH . C 3 HOH A 40 68 68 HOH HOH . C 3 HOH A 41 69 69 HOH HOH . C 3 HOH A 42 70 70 HOH HOH . C 3 HOH A 43 71 71 HOH HOH . C 3 HOH A 44 75 75 HOH HOH . C 3 HOH A 45 76 76 HOH HOH . C 3 HOH A 46 78 78 HOH HOH . C 3 HOH A 47 79 79 HOH HOH . C 3 HOH A 48 81 81 HOH HOH . C 3 HOH A 49 82 82 HOH HOH . C 3 HOH A 50 83 83 HOH HOH . C 3 HOH A 51 84 84 HOH HOH . C 3 HOH A 52 87 87 HOH HOH . C 3 HOH A 53 89 89 HOH HOH . C 3 HOH A 54 90 90 HOH HOH . C 3 HOH A 55 91 91 HOH HOH . C 3 HOH A 56 92 92 HOH HOH . C 3 HOH A 57 93 93 HOH HOH . C 3 HOH A 58 100 100 HOH HOH . C 3 HOH A 59 101 101 HOH HOH . C 3 HOH A 60 102 102 HOH HOH . C 3 HOH A 61 104 104 HOH HOH . C 3 HOH A 62 109 109 HOH HOH . C 3 HOH A 63 110 110 HOH HOH . C 3 HOH A 64 111 111 HOH HOH . C 3 HOH A 65 112 112 HOH HOH . C 3 HOH A 66 113 113 HOH HOH . C 3 HOH A 67 114 114 HOH HOH . C 3 HOH A 68 115 115 HOH HOH . C 3 HOH A 69 116 116 HOH HOH . C 3 HOH A 70 117 117 HOH HOH . C 3 HOH A 71 118 118 HOH HOH . C 3 HOH A 72 119 119 HOH HOH . C 3 HOH A 73 123 123 HOH HOH . C 3 HOH A 74 124 124 HOH HOH . C 3 HOH A 75 129 129 HOH HOH . C 3 HOH A 76 130 130 HOH HOH . C 3 HOH A 77 131 131 HOH HOH . C 3 HOH A 78 132 132 HOH HOH . C 3 HOH A 79 135 135 HOH HOH . C 3 HOH A 80 136 136 HOH HOH . C 3 HOH A 81 137 137 HOH HOH . C 3 HOH A 82 138 138 HOH HOH . C 3 HOH A 83 139 139 HOH HOH . C 3 HOH A 84 140 140 HOH HOH . C 3 HOH A 85 142 142 HOH HOH . C 3 HOH A 86 143 143 HOH HOH . C 3 HOH A 87 144 144 HOH HOH . C 3 HOH A 88 147 147 HOH HOH . C 3 HOH A 89 150 150 HOH HOH . C 3 HOH A 90 151 151 HOH HOH . C 3 HOH A 91 152 152 HOH HOH . C 3 HOH A 92 155 155 HOH HOH . C 3 HOH A 93 156 156 HOH HOH . C 3 HOH A 94 157 157 HOH HOH . C 3 HOH A 95 158 158 HOH HOH . C 3 HOH A 96 160 160 HOH HOH . C 3 HOH A 97 161 161 HOH HOH . C 3 HOH A 98 162 162 HOH HOH . C 3 HOH A 99 163 163 HOH HOH . C 3 HOH A 100 164 164 HOH HOH . C 3 HOH A 101 165 165 HOH HOH . C 3 HOH A 102 166 166 HOH HOH . C 3 HOH A 103 167 167 HOH HOH . C 3 HOH A 104 168 168 HOH HOH . C 3 HOH A 105 169 169 HOH HOH . C 3 HOH A 106 171 171 HOH HOH . C 3 HOH A 107 172 172 HOH HOH . C 3 HOH A 108 173 173 HOH HOH . C 3 HOH A 109 174 174 HOH HOH . C 3 HOH A 110 175 175 HOH HOH . C 3 HOH A 111 176 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . B 2 7.215 4.892 -10.31 1 150.65 ? PG ANP 1000 A 1 HETATM 2 O O1G ANP . . . B 2 8.686 4.478 -10.683 1 108.57 ? O1G ANP 1000 A 1 HETATM 3 O O2G ANP . . . B 2 7.12 6.453 -10.239 1 75.31 ? O2G ANP 1000 A 1 HETATM 4 O O3G ANP . . . B 2 6.87 4.332 -8.961 1 139.83 ? O3G ANP 1000 A 1 HETATM 5 P PB ANP . . . B 2 6.432 2.82 -12.075 1 198.67 ? PB ANP 1000 A 1 HETATM 6 O O1B ANP . . . B 2 5.163 2.226 -12.792 1 148.26 ? O1B ANP 1000 A 1 HETATM 7 O O2B ANP . . . B 2 6.741 1.877 -10.889 1 192.8 ? O2B ANP 1000 A 1 HETATM 8 N N3B ANP . . . B 2 6.112 4.34 -11.451 1 128.43 ? N3B ANP 1000 A 1 HETATM 9 P PA ANP . . . B 2 8.465 1.647 -13.55 1 162.66 ? PA ANP 1000 A 1 HETATM 10 O O1A ANP . . . B 2 8.036 1.099 -14.896 1 161.72 ? O1A ANP 1000 A 1 HETATM 11 O O2A ANP . . . B 2 8.347 0.547 -12.512 1 159.86 ? O2A ANP 1000 A 1 HETATM 12 O O3A ANP . . . B 2 7.575 2.905 -13.154 1 167.14 ? O3A ANP 1000 A 1 HETATM 13 O O5' ANP . . . B 2 9.976 2.069 -13.625 1 146.08 ? O5' ANP 1000 A 1 HETATM 14 C C5' ANP . . . B 2 10.893 1.284 -12.937 1 145.06 ? C5' ANP 1000 A 1 HETATM 15 C C4' ANP . . . B 2 12.215 1.304 -13.46 1 131.71 ? C4' ANP 1000 A 1 HETATM 16 O O4' ANP . . . B 2 12.243 0.491 -14.674 1 119.37 ? O4' ANP 1000 A 1 HETATM 17 C C3' ANP . . . B 2 12.451 2.694 -13.866 1 117.2 ? C3' ANP 1000 A 1 HETATM 18 O O3' ANP . . . B 2 13.375 3.287 -13.038 1 98.07 ? O3' ANP 1000 A 1 HETATM 19 C C2' ANP . . . B 2 12.879 2.639 -15.272 1 114.17 ? C2' ANP 1000 A 1 HETATM 20 O O2' ANP . . . B 2 14.076 3.263 -15.398 1 114.3 ? O2' ANP 1000 A 1 HETATM 21 C C1' ANP . . . B 2 13.012 1.189 -15.609 1 111.12 ? C1' ANP 1000 A 1 HETATM 22 N N9 ANP . . . B 2 12.657 0.836 -16.988 1 97.95 ? N9 ANP 1000 A 1 HETATM 23 C C8 ANP . . . B 2 11.444 0.45 -17.416 1 101.96 ? C8 ANP 1000 A 1 HETATM 24 N N7 ANP . . . B 2 11.507 0.14 -18.729 1 97.55 ? N7 ANP 1000 A 1 HETATM 25 C C5 ANP . . . B 2 12.783 0.323 -19.142 1 82.88 ? C5 ANP 1000 A 1 HETATM 26 C C6 ANP . . . B 2 13.436 0.167 -20.369 1 69.95 ? C6 ANP 1000 A 1 HETATM 27 N N6 ANP . . . B 2 12.748 -0.285 -21.534 1 57.51 ? N6 ANP 1000 A 1 HETATM 28 N N1 ANP . . . B 2 14.749 0.45 -20.422 1 77.74 ? N1 ANP 1000 A 1 HETATM 29 C C2 ANP . . . B 2 15.425 0.871 -19.345 1 77.84 ? C2 ANP 1000 A 1 HETATM 30 N N3 ANP . . . B 2 14.824 1.031 -18.165 1 73.98 ? N3 ANP 1000 A 1 HETATM 31 C C4 ANP . . . B 2 13.512 0.763 -18.037 1 82.88 ? C4 ANP 1000 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #