data_3UJF # _model_server_result.job_id TjjCv67CtyO31R1ugtmo4w _model_server_result.datetime_utc '2024-12-04 09:39:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ujf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 3UJF # _exptl.entry_id 3UJF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 168.042 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHOENOLPYRUVATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UJF _cell.length_a 109.608 _cell.length_b 119.336 _cell.length_c 68.297 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UJF _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 39 A SER 39 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc2 A O SER 39 A SER 39 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc3 A OD1 ASP 244 A ASP 244 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 A OE1 GLU 292 A GLU 292 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc5 A OD1 ASP 317 A ASP 317 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.934 ? metalc ? metalc6 C MG MG . A MG 501 1_555 E O2 2PG . A 2PG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc7 C MG MG . A MG 501 1_555 E O1 2PG . A 2PG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc8 C MG MG . A MG 501 1_555 I O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc9 D MG MG . A MG 502 1_555 E O3P 2PG . A 2PG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc10 D MG MG . A MG 502 1_555 E O1 2PG . A 2PG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 D MG MG . A MG 502 1_555 I O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc12 D MG MG . A MG 502 1_555 I O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.876 ? metalc ? metalc13 B O SER 39 B SER 39 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc14 B OG SER 39 B SER 39 1_555 G MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc15 B OD1 ASP 244 B ASP 244 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc16 B OE1 GLU 292 B GLU 292 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.851 ? metalc ? metalc17 B OD1 ASP 317 B ASP 317 1_555 F MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc18 F MG MG . B MG 501 1_555 H O2' PEP . B PEP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? metalc ? metalc19 F MG MG . B MG 501 1_555 H O1 PEP . B PEP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc20 F MG MG . B MG 501 1_555 J O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.742 ? metalc ? metalc21 G MG MG . B MG 502 1_555 H O3P PEP . B PEP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc22 G MG MG . B MG 502 1_555 H O1 PEP . B PEP 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc23 G MG MG . B MG 502 1_555 J O HOH . B HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc24 G MG MG . B MG 502 1_555 J O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? # _chem_comp.formula 'C3 H5 O6 P' _chem_comp.formula_weight 168.042 _chem_comp.id PEP _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHOENOLPYRUVATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEP doub 254 n n C1 O2' PEP sing 255 n n C1 C2 PEP sing 256 n n O2' HO2 PEP sing 257 n n C2 C3 PEP doub 258 n n C2 O2 PEP sing 259 n n C3 H31 PEP sing 260 n n C3 H32 PEP sing 261 n n O2 P PEP sing 262 n n P O1P PEP doub 263 n n P O2P PEP sing 264 n n P O3P PEP sing 265 n n O2P HOP2 PEP sing 266 n n O3P HOP3 PEP sing 267 n n # _atom_sites.entry_id 3UJF _atom_sites.fract_transf_matrix[1][1] 0.009123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014642 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 599 MG MG . D 2 MG A 1 502 600 MG MG . E 3 2PG A 1 503 601 2PG 2PG . F 2 MG B 1 501 599 MG MG . G 2 MG B 1 502 600 MG MG . H 4 PEP B 1 503 6080 PEP PEP . I 5 HOH A 1 601 800 HOH HOH . I 5 HOH A 2 602 801 HOH HOH . I 5 HOH A 3 603 802 HOH HOH . I 5 HOH A 4 604 5 HOH HOH . I 5 HOH A 5 605 7 HOH HOH . I 5 HOH A 6 606 9 HOH HOH . I 5 HOH A 7 607 12 HOH HOH . I 5 HOH A 8 608 20 HOH HOH . I 5 HOH A 9 609 22 HOH HOH . I 5 HOH A 10 610 23 HOH HOH . I 5 HOH A 11 611 24 HOH HOH . I 5 HOH A 12 612 27 HOH HOH . I 5 HOH A 13 613 28 HOH HOH . I 5 HOH A 14 614 29 HOH HOH . I 5 HOH A 15 615 32 HOH HOH . I 5 HOH A 16 616 34 HOH HOH . I 5 HOH A 17 617 35 HOH HOH . I 5 HOH A 18 618 40 HOH HOH . I 5 HOH A 19 619 42 HOH HOH . I 5 HOH A 20 620 46 HOH HOH . I 5 HOH A 21 621 47 HOH HOH . I 5 HOH A 22 622 50 HOH HOH . I 5 HOH A 23 623 54 HOH HOH . I 5 HOH A 24 624 56 HOH HOH . I 5 HOH A 25 625 71 HOH HOH . I 5 HOH A 26 626 72 HOH HOH . I 5 HOH A 27 627 73 HOH HOH . I 5 HOH A 28 628 74 HOH HOH . I 5 HOH A 29 629 75 HOH HOH . I 5 HOH A 30 630 77 HOH HOH . I 5 HOH A 31 631 78 HOH HOH . I 5 HOH A 32 632 89 HOH HOH . I 5 HOH A 33 633 90 HOH HOH . I 5 HOH A 34 634 91 HOH HOH . I 5 HOH A 35 635 92 HOH HOH . I 5 HOH A 36 636 93 HOH HOH . I 5 HOH A 37 637 94 HOH HOH . I 5 HOH A 38 638 95 HOH HOH . I 5 HOH A 39 639 96 HOH HOH . I 5 HOH A 40 640 97 HOH HOH . I 5 HOH A 41 641 98 HOH HOH . I 5 HOH A 42 642 99 HOH HOH . I 5 HOH A 43 643 100 HOH HOH . I 5 HOH A 44 644 101 HOH HOH . I 5 HOH A 45 645 102 HOH HOH . I 5 HOH A 46 646 107 HOH HOH . I 5 HOH A 47 647 108 HOH HOH . I 5 HOH A 48 648 109 HOH HOH . I 5 HOH A 49 649 110 HOH HOH . I 5 HOH A 50 650 111 HOH HOH . I 5 HOH A 51 651 115 HOH HOH . I 5 HOH A 52 652 116 HOH HOH . I 5 HOH A 53 653 120 HOH HOH . I 5 HOH A 54 654 121 HOH HOH . I 5 HOH A 55 655 124 HOH HOH . I 5 HOH A 56 656 133 HOH HOH . I 5 HOH A 57 657 134 HOH HOH . I 5 HOH A 58 658 135 HOH HOH . I 5 HOH A 59 659 136 HOH HOH . I 5 HOH A 60 660 139 HOH HOH . I 5 HOH A 61 661 140 HOH HOH . I 5 HOH A 62 662 141 HOH HOH . I 5 HOH A 63 663 144 HOH HOH . I 5 HOH A 64 664 145 HOH HOH . I 5 HOH A 65 665 146 HOH HOH . I 5 HOH A 66 666 148 HOH HOH . I 5 HOH A 67 667 149 HOH HOH . I 5 HOH A 68 668 151 HOH HOH . I 5 HOH A 69 669 152 HOH HOH . I 5 HOH A 70 670 153 HOH HOH . I 5 HOH A 71 671 155 HOH HOH . I 5 HOH A 72 672 156 HOH HOH . I 5 HOH A 73 673 158 HOH HOH . I 5 HOH A 74 674 159 HOH HOH . I 5 HOH A 75 675 160 HOH HOH . I 5 HOH A 76 676 163 HOH HOH . I 5 HOH A 77 677 164 HOH HOH . I 5 HOH A 78 678 165 HOH HOH . I 5 HOH A 79 679 166 HOH HOH . I 5 HOH A 80 680 167 HOH HOH . I 5 HOH A 81 681 169 HOH HOH . I 5 HOH A 82 682 170 HOH HOH . I 5 HOH A 83 683 172 HOH HOH . I 5 HOH A 84 684 174 HOH HOH . I 5 HOH A 85 685 176 HOH HOH . I 5 HOH A 86 686 179 HOH HOH . I 5 HOH A 87 687 180 HOH HOH . I 5 HOH A 88 688 182 HOH HOH . J 5 HOH B 1 601 800 HOH HOH . J 5 HOH B 2 602 801 HOH HOH . J 5 HOH B 3 603 802 HOH HOH . J 5 HOH B 4 604 1 HOH HOH . J 5 HOH B 5 605 2 HOH HOH . J 5 HOH B 6 606 3 HOH HOH . J 5 HOH B 7 607 4 HOH HOH . J 5 HOH B 8 608 6 HOH HOH . J 5 HOH B 9 609 8 HOH HOH . J 5 HOH B 10 610 10 HOH HOH . J 5 HOH B 11 611 11 HOH HOH . J 5 HOH B 12 612 13 HOH HOH . J 5 HOH B 13 613 14 HOH HOH . J 5 HOH B 14 614 15 HOH HOH . J 5 HOH B 15 615 16 HOH HOH . J 5 HOH B 16 616 17 HOH HOH . J 5 HOH B 17 617 18 HOH HOH . J 5 HOH B 18 618 19 HOH HOH . J 5 HOH B 19 619 21 HOH HOH . J 5 HOH B 20 620 25 HOH HOH . J 5 HOH B 21 621 26 HOH HOH . J 5 HOH B 22 622 30 HOH HOH . J 5 HOH B 23 623 31 HOH HOH . J 5 HOH B 24 624 33 HOH HOH . J 5 HOH B 25 625 36 HOH HOH . J 5 HOH B 26 626 37 HOH HOH . J 5 HOH B 27 627 38 HOH HOH . J 5 HOH B 28 628 39 HOH HOH . J 5 HOH B 29 629 41 HOH HOH . J 5 HOH B 30 630 43 HOH HOH . J 5 HOH B 31 631 44 HOH HOH . J 5 HOH B 32 632 45 HOH HOH . J 5 HOH B 33 633 48 HOH HOH . J 5 HOH B 34 634 49 HOH HOH . J 5 HOH B 35 635 51 HOH HOH . J 5 HOH B 36 636 52 HOH HOH . J 5 HOH B 37 637 53 HOH HOH . J 5 HOH B 38 638 55 HOH HOH . J 5 HOH B 39 639 57 HOH HOH . J 5 HOH B 40 640 58 HOH HOH . J 5 HOH B 41 641 59 HOH HOH . J 5 HOH B 42 642 60 HOH HOH . J 5 HOH B 43 643 61 HOH HOH . J 5 HOH B 44 644 62 HOH HOH . J 5 HOH B 45 645 63 HOH HOH . J 5 HOH B 46 646 64 HOH HOH . J 5 HOH B 47 647 65 HOH HOH . J 5 HOH B 48 648 66 HOH HOH . J 5 HOH B 49 649 67 HOH HOH . J 5 HOH B 50 650 68 HOH HOH . J 5 HOH B 51 651 69 HOH HOH . J 5 HOH B 52 652 70 HOH HOH . J 5 HOH B 53 653 76 HOH HOH . J 5 HOH B 54 654 79 HOH HOH . J 5 HOH B 55 655 80 HOH HOH . J 5 HOH B 56 656 81 HOH HOH . J 5 HOH B 57 657 82 HOH HOH . J 5 HOH B 58 658 83 HOH HOH . J 5 HOH B 59 659 84 HOH HOH . J 5 HOH B 60 660 85 HOH HOH . J 5 HOH B 61 661 86 HOH HOH . J 5 HOH B 62 662 87 HOH HOH . J 5 HOH B 63 663 88 HOH HOH . J 5 HOH B 64 664 103 HOH HOH . J 5 HOH B 65 665 104 HOH HOH . J 5 HOH B 66 666 105 HOH HOH . J 5 HOH B 67 667 106 HOH HOH . J 5 HOH B 68 668 112 HOH HOH . J 5 HOH B 69 669 113 HOH HOH . J 5 HOH B 70 670 114 HOH HOH . J 5 HOH B 71 671 117 HOH HOH . J 5 HOH B 72 672 118 HOH HOH . J 5 HOH B 73 673 119 HOH HOH . J 5 HOH B 74 674 122 HOH HOH . J 5 HOH B 75 675 123 HOH HOH . J 5 HOH B 76 676 125 HOH HOH . J 5 HOH B 77 677 126 HOH HOH . J 5 HOH B 78 678 127 HOH HOH . J 5 HOH B 79 679 128 HOH HOH . J 5 HOH B 80 680 129 HOH HOH . J 5 HOH B 81 681 130 HOH HOH . J 5 HOH B 82 682 131 HOH HOH . J 5 HOH B 83 683 132 HOH HOH . J 5 HOH B 84 684 137 HOH HOH . J 5 HOH B 85 685 138 HOH HOH . J 5 HOH B 86 686 142 HOH HOH . J 5 HOH B 87 687 143 HOH HOH . J 5 HOH B 88 688 147 HOH HOH . J 5 HOH B 89 689 150 HOH HOH . J 5 HOH B 90 690 154 HOH HOH . J 5 HOH B 91 691 157 HOH HOH . J 5 HOH B 92 692 161 HOH HOH . J 5 HOH B 93 693 162 HOH HOH . J 5 HOH B 94 694 168 HOH HOH . J 5 HOH B 95 695 171 HOH HOH . J 5 HOH B 96 696 173 HOH HOH . J 5 HOH B 97 697 175 HOH HOH . J 5 HOH B 98 698 177 HOH HOH . J 5 HOH B 99 699 178 HOH HOH . J 5 HOH B 100 700 181 HOH HOH . J 5 HOH B 101 701 183 HOH HOH . J 5 HOH B 102 702 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEP . . . H 4 85.168 113.339 -1.092 1 24.76 ? C1 PEP 503 B 1 HETATM 2 O O1 PEP . . . H 4 85.49 114.529 -1.255 1 24.92 ? O1 PEP 503 B 1 HETATM 3 O O2' PEP . . . H 4 84.82 112.746 -2.077 1 22.51 ? O2' PEP 503 B 1 HETATM 4 C C2 PEP . . . H 4 85.182 112.697 0.239 1 27.42 ? C2 PEP 503 B 1 HETATM 5 C C3 PEP . . . H 4 84.931 111.395 0.471 1 24.14 ? C3 PEP 503 B 1 HETATM 6 O O2 PEP . . . H 4 85.566 113.584 1.331 1 28.4 ? O2 PEP 503 B 1 HETATM 7 P P PEP . . . H 4 84.641 114.554 2.223 1 25.44 ? P PEP 503 B 1 HETATM 8 O O1P PEP . . . H 4 83.594 113.627 2.832 1 26.18 ? O1P PEP 503 B 1 HETATM 9 O O2P PEP . . . H 4 85.722 115.147 3.103 1 24.93 ? O2P PEP 503 B 1 HETATM 10 O O3P PEP . . . H 4 84.077 115.586 1.286 1 27.31 ? O3P PEP 503 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #