data_3UK6 # _model_server_result.job_id UPd_RMbs8scEGhfZp_yBxw _model_server_result.datetime_utc '2024-11-04 23:18:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":1450}' # _entry.id 3UK6 # _exptl.entry_id 3UK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.95 _cell.angle_gamma 90 _cell.entry_id 3UK6 _cell.length_a 113.07 _cell.length_b 186.28 _cell.length_c 129.86 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,M,N,O,P,U,V 1 1 E,F,G,H,K,L,Q,R,S,T,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3UK6 _atom_sites.fract_transf_matrix[1][1] 0.008844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 ADP A 1 1450 1450 ADP ADP . N 2 ADP B 1 1450 1450 ADP ADP . O 2 ADP C 1 1450 1450 ADP ADP . P 2 ADP D 1 1450 1450 ADP ADP . Q 2 ADP E 1 1450 1450 ADP ADP . R 2 ADP F 1 1450 1450 ADP ADP . S 2 ADP G 1 1450 1450 ADP ADP . T 2 ADP H 1 1450 1450 ADP ADP . U 2 ADP I 1 1450 1450 ADP ADP . V 2 ADP J 1 1450 1450 ADP ADP . W 2 ADP K 1 1450 1450 ADP ADP . X 2 ADP L 1 1450 1450 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . T 2 -30.818 -26.775 91.042 1 98.83 ? PB ADP 1450 H 1 HETATM 2 O O1B ADP . . . T 2 -30.042 -26.271 92.181 1 94.6 ? O1B ADP 1450 H 1 HETATM 3 O O2B ADP . . . T 2 -29.861 -27.474 90.032 1 106.23 ? O2B ADP 1450 H 1 HETATM 4 O O3B ADP . . . T 2 -31.53 -25.638 90.377 1 95.72 ? O3B ADP 1450 H 1 HETATM 5 P PA ADP . . . T 2 -32.855 -28.037 92.817 1 102.02 ? PA ADP 1450 H 1 HETATM 6 O O1A ADP . . . T 2 -32.168 -28.921 93.785 1 106.53 ? O1A ADP 1450 H 1 HETATM 7 O O2A ADP . . . T 2 -33.168 -26.704 93.464 1 96.64 ? O2A ADP 1450 H 1 HETATM 8 O O3A ADP . . . T 2 -31.911 -27.837 91.536 1 102.23 ? O3A ADP 1450 H 1 HETATM 9 O O5' ADP . . . T 2 -34.179 -28.739 92.33 1 102.59 ? O5' ADP 1450 H 1 HETATM 10 C C5' ADP . . . T 2 -35.475 -28.14 92.13 1 96.88 ? C5' ADP 1450 H 1 HETATM 11 C C4' ADP . . . T 2 -36.504 -28.976 92.85 1 95.95 ? C4' ADP 1450 H 1 HETATM 12 O O4' ADP . . . T 2 -36.437 -30.358 92.423 1 100.24 ? O4' ADP 1450 H 1 HETATM 13 C C3' ADP . . . T 2 -36.38 -29.006 94.368 1 95.43 ? C3' ADP 1450 H 1 HETATM 14 O O3' ADP . . . T 2 -37.675 -29.018 94.957 1 94.26 ? O3' ADP 1450 H 1 HETATM 15 C C2' ADP . . . T 2 -35.558 -30.274 94.604 1 98.67 ? C2' ADP 1450 H 1 HETATM 16 O O2' ADP . . . T 2 -35.675 -30.773 95.925 1 97.81 ? O2' ADP 1450 H 1 HETATM 17 C C1' ADP . . . T 2 -36.118 -31.197 93.522 1 102.1 ? C1' ADP 1450 H 1 HETATM 18 N N9 ADP . . . T 2 -35.179 -32.216 93.058 1 105.89 ? N9 ADP 1450 H 1 HETATM 19 C C8 ADP . . . T 2 -34.212 -32.058 92.099 1 108.3 ? C8 ADP 1450 H 1 HETATM 20 N N7 ADP . . . T 2 -33.502 -33.136 91.872 1 114.12 ? N7 ADP 1450 H 1 HETATM 21 C C5 ADP . . . T 2 -34.034 -34.071 92.747 1 114.39 ? C5 ADP 1450 H 1 HETATM 22 C C6 ADP . . . T 2 -33.695 -35.414 93.029 1 116.71 ? C6 ADP 1450 H 1 HETATM 23 N N6 ADP . . . T 2 -32.719 -36.077 92.408 1 118.19 ? N6 ADP 1450 H 1 HETATM 24 N N1 ADP . . . T 2 -34.403 -36.055 93.988 1 117.83 ? N1 ADP 1450 H 1 HETATM 25 C C2 ADP . . . T 2 -35.393 -35.399 94.605 1 115.12 ? C2 ADP 1450 H 1 HETATM 26 N N3 ADP . . . T 2 -35.806 -34.14 94.418 1 111.7 ? N3 ADP 1450 H 1 HETATM 27 C C4 ADP . . . T 2 -35.074 -33.521 93.48 1 109.95 ? C4 ADP 1450 H 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #