data_3UK6 # _model_server_result.job_id rcF64yRFWKlscQeJMITy4A _model_server_result.datetime_utc '2024-11-04 23:20:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uk6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":1450}' # _entry.id 3UK6 # _exptl.entry_id 3UK6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.95 _cell.angle_gamma 90 _cell.entry_id 3UK6 _cell.length_a 113.07 _cell.length_b 186.28 _cell.length_c 129.86 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UK6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA hexameric 6 author_and_software_defined_assembly 1 PISA hexameric 6 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,M,N,O,P,U,V 1 1 E,F,G,H,K,L,Q,R,S,T,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 N N N ? 2 O N N ? 2 P N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 V N N ? 2 W N N ? 2 X N N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 3UK6 _atom_sites.fract_transf_matrix[1][1] 0.008844 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003037 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005368 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008142 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 ADP A 1 1450 1450 ADP ADP . N 2 ADP B 1 1450 1450 ADP ADP . O 2 ADP C 1 1450 1450 ADP ADP . P 2 ADP D 1 1450 1450 ADP ADP . Q 2 ADP E 1 1450 1450 ADP ADP . R 2 ADP F 1 1450 1450 ADP ADP . S 2 ADP G 1 1450 1450 ADP ADP . T 2 ADP H 1 1450 1450 ADP ADP . U 2 ADP I 1 1450 1450 ADP ADP . V 2 ADP J 1 1450 1450 ADP ADP . W 2 ADP K 1 1450 1450 ADP ADP . X 2 ADP L 1 1450 1450 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . V 2 63.476 -0.479 44.703 1 98.86 ? PB ADP 1450 J 1 HETATM 2 O O1B ADP . . . V 2 63.681 -1.478 45.745 1 101.04 ? O1B ADP 1450 J 1 HETATM 3 O O2B ADP . . . V 2 62.343 0.492 45.106 1 92.12 ? O2B ADP 1450 J 1 HETATM 4 O O3B ADP . . . V 2 63.142 -1.162 43.382 1 97.08 ? O3B ADP 1450 J 1 HETATM 5 P PA ADP . . . V 2 65.919 0.317 43.339 1 110.72 ? PA ADP 1450 J 1 HETATM 6 O O1A ADP . . . V 2 66.508 -1.027 43.132 1 115.41 ? O1A ADP 1450 J 1 HETATM 7 O O2A ADP . . . V 2 65.226 0.756 42.041 1 107.57 ? O2A ADP 1450 J 1 HETATM 8 O O3A ADP . . . V 2 64.86 0.308 44.54 1 104.43 ? O3A ADP 1450 J 1 HETATM 9 O O5' ADP . . . V 2 67.059 1.316 43.764 1 113.4 ? O5' ADP 1450 J 1 HETATM 10 C C5' ADP . . . V 2 67.207 2.689 43.352 1 109.16 ? C5' ADP 1450 J 1 HETATM 11 C C4' ADP . . . V 2 68.618 2.868 42.856 1 109.86 ? C4' ADP 1450 J 1 HETATM 12 O O4' ADP . . . V 2 69.544 2.442 43.879 1 112.41 ? O4' ADP 1450 J 1 HETATM 13 C C3' ADP . . . V 2 68.996 2.093 41.595 1 110.4 ? C3' ADP 1450 J 1 HETATM 14 O O3' ADP . . . V 2 69.868 2.876 40.787 1 111.52 ? O3' ADP 1450 J 1 HETATM 15 C C2' ADP . . . V 2 69.655 0.832 42.161 1 113.73 ? C2' ADP 1450 J 1 HETATM 16 O O2' ADP . . . V 2 70.538 0.178 41.254 1 116.03 ? O2' ADP 1450 J 1 HETATM 17 C C1' ADP . . . V 2 70.364 1.394 43.389 1 115.67 ? C1' ADP 1450 J 1 HETATM 18 N N9 ADP . . . V 2 70.567 0.422 44.46 1 116.98 ? N9 ADP 1450 J 1 HETATM 19 C C8 ADP . . . V 2 69.663 0.038 45.417 1 113.71 ? C8 ADP 1450 J 1 HETATM 20 N N7 ADP . . . V 2 70.129 -0.841 46.269 1 117.05 ? N7 ADP 1450 J 1 HETATM 21 C C5 ADP . . . V 2 71.436 -1.048 45.848 1 121.87 ? C5 ADP 1450 J 1 HETATM 22 C C6 ADP . . . V 2 72.501 -1.808 46.384 1 128.95 ? C6 ADP 1450 J 1 HETATM 23 N N6 ADP . . . V 2 72.369 -2.657 47.404 1 131.14 ? N6 ADP 1450 J 1 HETATM 24 N N1 ADP . . . V 2 73.717 -1.691 45.799 1 133.23 ? N1 ADP 1450 J 1 HETATM 25 C C2 ADP . . . V 2 73.842 -0.9 44.728 1 131.93 ? C2 ADP 1450 J 1 HETATM 26 N N3 ADP . . . V 2 72.905 -0.17 44.114 1 126.19 ? N3 ADP 1450 J 1 HETATM 27 C C4 ADP . . . V 2 71.719 -0.277 44.735 1 121.26 ? C4 ADP 1450 J 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 264 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 27 #