data_3UK6
#
_model_server_result.job_id            7twuO2lXp1hOVleLSwqVPQ 
_model_server_result.datetime_utc      '2024-11-04 23:18:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3uk6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":1450}' 
#
_entry.id    3UK6 
#
_exptl.entry_id    3UK6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          108.95 
_cell.angle_gamma         90 
_cell.entry_id            3UK6 
_cell.length_a            113.07 
_cell.length_b            186.28 
_cell.length_c            129.86 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UK6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,M,N,O,P,U,V 1 1 
E,F,G,H,K,L,Q,R,S,T,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
? 2 W N N 
? 2 X N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     3UK6 
_atom_sites.fract_transf_matrix[1][1]    0.008844 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003037 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005368 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008142 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 2 ADP A 1 1450 1450 ADP ADP . 
N 2 ADP B 1 1450 1450 ADP ADP . 
O 2 ADP C 1 1450 1450 ADP ADP . 
P 2 ADP D 1 1450 1450 ADP ADP . 
Q 2 ADP E 1 1450 1450 ADP ADP . 
R 2 ADP F 1 1450 1450 ADP ADP . 
S 2 ADP G 1 1450 1450 ADP ADP . 
T 2 ADP H 1 1450 1450 ADP ADP . 
U 2 ADP I 1 1450 1450 ADP ADP . 
V 2 ADP J 1 1450 1450 ADP ADP . 
W 2 ADP K 1 1450 1450 ADP ADP . 
X 2 ADP L 1 1450 1450 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . X 2 18.139 3.529 78.804 1 119.89 ? PB ADP 1450 L 1 
HETATM 2 O O1B ADP . . . X 2 17.792 4.482 79.898 1 117.52 ? O1B ADP 1450 L 1 
HETATM 3 O O2B ADP . . . X 2 17.903 4.187 77.444 1 120.91 ? O2B ADP 1450 L 1 
HETATM 4 O O3B ADP . . . X 2 17.271 2.28 78.929 1 122.78 ? O3B ADP 1450 L 1 
HETATM 5 P PA ADP . . . X 2 20.722 2.873 80.11 1 127.38 ? PA ADP 1450 L 1 
HETATM 6 O O1A ADP . . . X 2 21.43 4.142 80.415 1 128.69 ? O1A ADP 1450 L 1 
HETATM 7 O O2A ADP . . . X 2 19.985 2.4 81.36 1 128.73 ? O2A ADP 1450 L 1 
HETATM 8 O O3A ADP . . . X 2 19.682 3.113 78.915 1 123.61 ? O3A ADP 1450 L 1 
HETATM 9 O O5' ADP . . . X 2 21.747 1.772 79.613 1 127.94 ? O5' ADP 1450 L 1 
HETATM 10 C C5' ADP . . . X 2 21.838 0.398 80.057 1 126.13 ? C5' ADP 1450 L 1 
HETATM 11 C C4' ADP . . . X 2 23.248 0.096 80.514 1 125.9 ? C4' ADP 1450 L 1 
HETATM 12 O O4' ADP . . . X 2 24.18 0.41 79.455 1 127.47 ? O4' ADP 1450 L 1 
HETATM 13 C C3' ADP . . . X 2 23.753 0.852 81.745 1 124.11 ? C3' ADP 1450 L 1 
HETATM 14 O O3' ADP . . . X 2 24.657 0.074 82.533 1 123.88 ? O3' ADP 1450 L 1 
HETATM 15 C C2' ADP . . . X 2 24.437 2.068 81.118 1 123.28 ? C2' ADP 1450 L 1 
HETATM 16 O O2' ADP . . . X 2 25.342 2.737 81.985 1 122.67 ? O2' ADP 1450 L 1 
HETATM 17 C C1' ADP . . . X 2 25.071 1.43 79.879 1 126.74 ? C1' ADP 1450 L 1 
HETATM 18 N N9 ADP . . . X 2 25.285 2.353 78.769 1 125.83 ? N9 ADP 1450 L 1 
HETATM 19 C C8 ADP . . . X 2 24.358 2.78 77.855 1 122.71 ? C8 ADP 1450 L 1 
HETATM 20 N N7 ADP . . . X 2 24.816 3.662 77.002 1 122.27 ? N7 ADP 1450 L 1 
HETATM 21 C C5 ADP . . . X 2 26.142 3.822 77.374 1 127.82 ? C5 ADP 1450 L 1 
HETATM 22 C C6 ADP . . . X 2 27.185 4.617 76.857 1 130.92 ? C6 ADP 1450 L 1 
HETATM 23 N N6 ADP . . . X 2 27.037 5.459 75.832 1 130.68 ? N6 ADP 1450 L 1 
HETATM 24 N N1 ADP . . . X 2 28.402 4.513 77.438 1 134.32 ? N1 ADP 1450 L 1 
HETATM 25 C C2 ADP . . . X 2 28.56 3.666 78.46 1 135.04 ? C2 ADP 1450 L 1 
HETATM 26 N N3 ADP . . . X 2 27.653 2.874 79.038 1 133.71 ? N3 ADP 1450 L 1 
HETATM 27 C C4 ADP . . . X 2 26.45 3.007 78.45 1 130.03 ? C4 ADP 1450 L 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           31 
_model_server_stats.create_model_time_ms    285 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           27 
#