data_3UKP
#
_model_server_result.job_id            8GrRdb88dPhlugSXTSzFKw 
_model_server_result.datetime_utc      '2024-11-15 00:09:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ukp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":601}' 
#
_entry.id    3UKP 
#
_exptl.entry_id    3UKP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.01 
_cell.angle_gamma         90 
_cell.entry_id            3UKP 
_cell.length_a            129.6 
_cell.length_b            175.71 
_cell.length_c            135.347 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UKP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,G,I,J,M,N,Q,R,U 1 1 
B,D,F,H,K,L,O,P,S,T,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 I N N 
? 2 K N N 
? 2 M N N 
? 2 O N N 
? 2 Q N N 
? 2 S N N 
? 2 U N N 
? 2 V N N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3UKP 
_atom_sites.fract_transf_matrix[1][1]    0.007716 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005691 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007388 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 2 FAD A 1 601 601 FAD FAD . 
J 3 GDU A 1 602 802 GDU GDU . 
K 2 FAD B 1 601 607 FAD FAD . 
L 3 GDU B 1 602 802 GDU GDU . 
M 2 FAD C 1 601 601 FAD FAD . 
N 3 GDU C 1 602 802 GDU GDU . 
O 2 FAD D 1 601 602 FAD FAD . 
P 3 GDU D 1 602 802 GDU GDU . 
Q 2 FAD E 1 601 606 FAD FAD . 
R 3 GDU E 1 602 802 GDU GDU . 
S 2 FAD F 1 601 605 FAD FAD . 
T 3 GDU F 1 602 802 GDU GDU . 
U 2 FAD G 1 601 604 FAD FAD . 
V 2 FAD H 1 601 603 FAD FAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . S 2 -6.42 68.7 132.344 1 71.61 ? PA FAD 601 F 1 
HETATM 2 O O1A FAD . . . S 2 -6.279 67.303 132.186 1 43.08 ? O1A FAD 601 F 1 
HETATM 3 O O2A FAD . . . S 2 -6.179 69.508 131.003 1 12.38 ? O2A FAD 601 F 1 
HETATM 4 O O5B FAD . . . S 2 -7.924 68.929 132.926 1 87.3 ? O5B FAD 601 F 1 
HETATM 5 C C5B FAD . . . S 2 -8.848 69.69 132.154 1 54.95 ? C5B FAD 601 F 1 
HETATM 6 C C4B FAD . . . S 2 -9.98 68.985 131.524 1 74.99 ? C4B FAD 601 F 1 
HETATM 7 O O4B FAD . . . S 2 -10.608 69.856 130.634 1 22.36 ? O4B FAD 601 F 1 
HETATM 8 C C3B FAD . . . S 2 -9.566 67.784 130.772 1 79.73 ? C3B FAD 601 F 1 
HETATM 9 O O3B FAD . . . S 2 -10.13 66.629 131.336 1 81.23 ? O3B FAD 601 F 1 
HETATM 10 C C2B FAD . . . S 2 -10.067 67.958 129.475 1 85.96 ? C2B FAD 601 F 1 
HETATM 11 O O2B FAD . . . S 2 -10.712 66.78 129.052 1 74.21 ? O2B FAD 601 F 1 
HETATM 12 C C1B FAD . . . S 2 -11.024 69.105 129.555 1 73.29 ? C1B FAD 601 F 1 
HETATM 13 N N9A FAD . . . S 2 -11.09 69.828 128.264 1 90.4 ? N9A FAD 601 F 1 
HETATM 14 C C8A FAD . . . S 2 -10.106 70.342 127.505 1 62.76 ? C8A FAD 601 F 1 
HETATM 15 N N7A FAD . . . S 2 -10.676 70.9 126.43 1 70.77 ? N7A FAD 601 F 1 
HETATM 16 C C5A FAD . . . S 2 -12.02 70.74 126.506 1 74.65 ? C5A FAD 601 F 1 
HETATM 17 C C6A FAD . . . S 2 -13.121 71.102 125.696 1 67.56 ? C6A FAD 601 F 1 
HETATM 18 N N6A FAD . . . S 2 -12.905 71.806 124.489 1 82.35 ? N6A FAD 601 F 1 
HETATM 19 N N1A FAD . . . S 2 -14.375 70.776 126.069 1 37.45 ? N1A FAD 601 F 1 
HETATM 20 C C2A FAD . . . S 2 -14.582 70.112 127.208 1 67.79 ? C2A FAD 601 F 1 
HETATM 21 N N3A FAD . . . S 2 -13.558 69.754 128.005 1 49.21 ? N3A FAD 601 F 1 
HETATM 22 C C4A FAD . . . S 2 -12.283 70.05 127.687 1 40.67 ? C4A FAD 601 F 1 
HETATM 23 N N1 FAD . . . S 2 1.399 66.229 139.846 1 33.46 ? N1 FAD 601 F 1 
HETATM 24 C C2 FAD . . . S 2 1.911 65.909 141.045 1 69.09 ? C2 FAD 601 F 1 
HETATM 25 O O2 FAD . . . S 2 1.244 66.286 142.19 1 37.73 ? O2 FAD 601 F 1 
HETATM 26 N N3 FAD . . . S 2 3.069 65.231 141.169 1 94.12 ? N3 FAD 601 F 1 
HETATM 27 C C4 FAD . . . S 2 3.74 64.857 140.072 1 83.96 ? C4 FAD 601 F 1 
HETATM 28 O O4 FAD . . . S 2 4.968 64.132 140.167 1 50.9 ? O4 FAD 601 F 1 
HETATM 29 C C4X FAD . . . S 2 3.247 65.162 138.801 1 79.17 ? C4X FAD 601 F 1 
HETATM 30 N N5 FAD . . . S 2 3.897 64.795 137.697 1 52.8 ? N5 FAD 601 F 1 
HETATM 31 C C5X FAD . . . S 2 3.364 65.122 136.502 1 97.84 ? C5X FAD 601 F 1 
HETATM 32 C C6 FAD . . . S 2 4.07 64.722 135.366 1 80.25 ? C6 FAD 601 F 1 
HETATM 33 C C7 FAD . . . S 2 3.567 65.032 134.102 1 66.65 ? C7 FAD 601 F 1 
HETATM 34 C C7M FAD . . . S 2 4.338 64.594 132.822 1 42.22 ? C7M FAD 601 F 1 
HETATM 35 C C8 FAD . . . S 2 2.384 65.723 133.993 1 67.55 ? C8 FAD 601 F 1 
HETATM 36 C C8M FAD . . . S 2 1.844 66.056 132.623 1 107.02 ? C8M FAD 601 F 1 
HETATM 37 C C9 FAD . . . S 2 1.68 66.122 135.137 1 22.82 ? C9 FAD 601 F 1 
HETATM 38 C C9A FAD . . . S 2 2.169 65.824 136.404 1 64.94 ? C9A FAD 601 F 1 
HETATM 39 N N10 FAD . . . S 2 1.506 66.183 137.537 1 39.46 ? N10 FAD 601 F 1 
HETATM 40 C C10 FAD . . . S 2 2.046 65.866 138.724 1 60.11 ? C10 FAD 601 F 1 
HETATM 41 C C1' FAD . . . S 2 0.259 66.924 137.596 1 50.06 ? C1' FAD 601 F 1 
HETATM 42 C C2' FAD . . . S 2 -0.879 66.915 136.656 1 80.17 ? C2' FAD 601 F 1 
HETATM 43 O O2' FAD . . . S 2 -1.043 65.949 135.713 1 53.89 ? O2' FAD 601 F 1 
HETATM 44 C C3' FAD . . . S 2 -1.741 68.143 136.625 1 90.55 ? C3' FAD 601 F 1 
HETATM 45 O O3' FAD . . . S 2 -1.69 68.779 137.856 1 69.62 ? O3' FAD 601 F 1 
HETATM 46 C C4' FAD . . . S 2 -3.219 67.964 136.229 1 81.07 ? C4' FAD 601 F 1 
HETATM 47 O O4' FAD . . . S 2 -3.315 67.247 135.012 1 76.8 ? O4' FAD 601 F 1 
HETATM 48 C C5' FAD . . . S 2 -3.878 69.269 136.083 1 90.22 ? C5' FAD 601 F 1 
HETATM 49 O O5' FAD . . . S 2 -5.328 69.421 135.918 1 48.31 ? O5' FAD 601 F 1 
HETATM 50 P P FAD . . . S 2 -5.847 70.147 134.65 1 48.39 ? P FAD 601 F 1 
HETATM 51 O O1P FAD . . . S 2 -7.384 70.334 134.797 1 80.04 ? O1P FAD 601 F 1 
HETATM 52 O O2P FAD . . . S 2 -5.216 71.579 134.453 1 13.79 ? O2P FAD 601 F 1 
HETATM 53 O O3P FAD . . . S 2 -5.462 69.083 133.38 1 81.66 ? O3P FAD 601 F 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           35 
_model_server_stats.create_model_time_ms    72 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           53 
#