data_3UKQ # _model_server_result.job_id 5dhxLYE7YsPFewDYFgttCQ _model_server_result.datetime_utc '2024-11-15 12:33:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ukq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 3UKQ # _exptl.entry_id 3UKQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UKQ _cell.length_a 129.54 _cell.length_b 135.48 _cell.length_c 176.15 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UKQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,J,M,O 1 1 B,D,G,H,K,L,N,P 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 129.54 -67.74 88.075 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3UKQ _atom_sites.fract_transf_matrix[1][1] 0.00772 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007381 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FAD A 1 601 602 FAD FAD . F 3 GDU A 1 602 802 GDU GDU . G 2 FAD B 1 601 604 FAD FAD . H 3 GDU B 1 602 802 GDU GDU . I 2 FAD C 1 601 600 FAD FAD . J 3 GDU C 1 602 802 GDU GDU . K 2 FAD D 1 601 601 FAD FAD . L 3 GDU D 1 602 802 GDU GDU . M 4 HOH A 1 701 512 HOH HOH . M 4 HOH A 2 702 516 HOH HOH . M 4 HOH A 3 703 517 HOH HOH . M 4 HOH A 4 704 518 HOH HOH . M 4 HOH A 5 705 520 HOH HOH . M 4 HOH A 6 706 522 HOH HOH . M 4 HOH A 7 707 523 HOH HOH . M 4 HOH A 8 708 526 HOH HOH . M 4 HOH A 9 709 529 HOH HOH . M 4 HOH A 10 710 531 HOH HOH . M 4 HOH A 11 711 532 HOH HOH . M 4 HOH A 12 712 536 HOH HOH . M 4 HOH A 13 713 537 HOH HOH . M 4 HOH A 14 714 542 HOH HOH . M 4 HOH A 15 715 546 HOH HOH . M 4 HOH A 16 716 548 HOH HOH . M 4 HOH A 17 717 549 HOH HOH . M 4 HOH A 18 718 557 HOH HOH . M 4 HOH A 19 719 563 HOH HOH . M 4 HOH A 20 720 566 HOH HOH . N 4 HOH B 1 701 1 HOH HOH . N 4 HOH B 2 702 512 HOH HOH . N 4 HOH B 3 703 513 HOH HOH . N 4 HOH B 4 704 515 HOH HOH . N 4 HOH B 5 705 517 HOH HOH . N 4 HOH B 6 706 518 HOH HOH . N 4 HOH B 7 707 519 HOH HOH . N 4 HOH B 8 708 520 HOH HOH . N 4 HOH B 9 709 521 HOH HOH . N 4 HOH B 10 710 522 HOH HOH . N 4 HOH B 11 711 523 HOH HOH . N 4 HOH B 12 712 524 HOH HOH . N 4 HOH B 13 713 525 HOH HOH . N 4 HOH B 14 714 528 HOH HOH . N 4 HOH B 15 715 530 HOH HOH . N 4 HOH B 16 716 535 HOH HOH . N 4 HOH B 17 717 540 HOH HOH . N 4 HOH B 18 718 543 HOH HOH . N 4 HOH B 19 719 546 HOH HOH . N 4 HOH B 20 720 548 HOH HOH . N 4 HOH B 21 721 553 HOH HOH . N 4 HOH B 22 722 555 HOH HOH . N 4 HOH B 23 723 561 HOH HOH . N 4 HOH B 24 724 563 HOH HOH . N 4 HOH B 25 725 566 HOH HOH . O 4 HOH C 1 701 513 HOH HOH . O 4 HOH C 2 702 516 HOH HOH . O 4 HOH C 3 703 517 HOH HOH . O 4 HOH C 4 704 518 HOH HOH . O 4 HOH C 5 705 525 HOH HOH . O 4 HOH C 6 706 526 HOH HOH . O 4 HOH C 7 707 527 HOH HOH . O 4 HOH C 8 708 534 HOH HOH . O 4 HOH C 9 709 540 HOH HOH . O 4 HOH C 10 710 542 HOH HOH . O 4 HOH C 11 711 543 HOH HOH . O 4 HOH C 12 712 544 HOH HOH . O 4 HOH C 13 713 548 HOH HOH . O 4 HOH C 14 714 560 HOH HOH . O 4 HOH C 15 715 562 HOH HOH . P 4 HOH D 1 701 512 HOH HOH . P 4 HOH D 2 702 517 HOH HOH . P 4 HOH D 3 703 521 HOH HOH . P 4 HOH D 4 704 529 HOH HOH . P 4 HOH D 5 705 538 HOH HOH . P 4 HOH D 6 706 542 HOH HOH . P 4 HOH D 7 707 544 HOH HOH . P 4 HOH D 8 708 547 HOH HOH . P 4 HOH D 9 709 555 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 2 22.417 32.945 42.11 1 41.06 ? PA FAD 601 A 1 HETATM 2 O O1A FAD . . . E 2 22.195 32.39 43.386 1 40.21 ? O1A FAD 601 A 1 HETATM 3 O O2A FAD . . . E 2 23.445 32.101 41.283 1 31.88 ? O2A FAD 601 A 1 HETATM 4 O O5B FAD . . . E 2 20.971 32.977 41.363 1 76.24 ? O5B FAD 601 A 1 HETATM 5 C C5B FAD . . . E 2 20.603 31.884 40.519 1 57.04 ? C5B FAD 601 A 1 HETATM 6 C C4B FAD . . . E 2 19.254 31.31 40.693 1 55.72 ? C4B FAD 601 A 1 HETATM 7 O O4B FAD . . . E 2 18.95 30.503 39.596 1 55.9 ? O4B FAD 601 A 1 HETATM 8 C C3B FAD . . . E 2 19.193 30.479 41.907 1 59.51 ? C3B FAD 601 A 1 HETATM 9 O O3B FAD . . . E 2 18.103 30.923 42.659 1 65.61 ? O3B FAD 601 A 1 HETATM 10 C C2B FAD . . . E 2 19.023 29.175 41.421 1 54.24 ? C2B FAD 601 A 1 HETATM 11 O O2B FAD . . . E 2 18.273 28.361 42.288 1 60.68 ? O2B FAD 601 A 1 HETATM 12 C C1B FAD . . . E 2 18.347 29.381 40.112 1 53.02 ? C1B FAD 601 A 1 HETATM 13 N N9A FAD . . . E 2 18.477 28.17 39.288 1 43.5 ? N9A FAD 601 A 1 HETATM 14 C C8A FAD . . . E 2 19.511 27.334 39.125 1 51.12 ? C8A FAD 601 A 1 HETATM 15 N N7A FAD . . . E 2 19.127 26.385 38.261 1 48.8 ? N7A FAD 601 A 1 HETATM 16 C C5A FAD . . . E 2 17.853 26.624 37.88 1 59.17 ? C5A FAD 601 A 1 HETATM 17 C C6A FAD . . . E 2 16.935 25.992 37.017 1 58.32 ? C6A FAD 601 A 1 HETATM 18 N N6A FAD . . . E 2 17.299 24.817 36.318 1 61.18 ? N6A FAD 601 A 1 HETATM 19 N N1A FAD . . . E 2 15.704 26.52 36.866 1 69.97 ? N1A FAD 601 A 1 HETATM 20 C C2A FAD . . . E 2 15.342 27.631 37.521 1 62.82 ? C2A FAD 601 A 1 HETATM 21 N N3A FAD . . . E 2 16.191 28.262 38.351 1 52.86 ? N3A FAD 601 A 1 HETATM 22 C C4A FAD . . . E 2 17.437 27.781 38.543 1 55.34 ? C4A FAD 601 A 1 HETATM 23 N N1 FAD . . . E 2 27.841 39.75 47.426 1 44.67 ? N1 FAD 601 A 1 HETATM 24 C C2 FAD . . . E 2 27.951 40.943 48.023 1 47.03 ? C2 FAD 601 A 1 HETATM 25 O O2 FAD . . . E 2 27.477 42.068 47.385 1 49.37 ? O2 FAD 601 A 1 HETATM 26 N N3 FAD . . . E 2 28.515 41.073 49.236 1 48.65 ? N3 FAD 601 A 1 HETATM 27 C C4 FAD . . . E 2 28.981 39.996 49.876 1 62.49 ? C4 FAD 601 A 1 HETATM 28 O O4 FAD . . . E 2 29.58 40.147 51.162 1 78.03 ? O4 FAD 601 A 1 HETATM 29 C C4X FAD . . . E 2 28.891 38.722 49.296 1 57.3 ? C4X FAD 601 A 1 HETATM 30 N N5 FAD . . . E 2 29.346 37.614 49.906 1 52.02 ? N5 FAD 601 A 1 HETATM 31 C C5X FAD . . . E 2 29.223 36.411 49.281 1 46.47 ? C5X FAD 601 A 1 HETATM 32 C C6 FAD . . . E 2 29.696 35.252 49.915 1 47.94 ? C6 FAD 601 A 1 HETATM 33 C C7 FAD . . . E 2 29.573 34.004 49.279 1 41.95 ? C7 FAD 601 A 1 HETATM 34 C C7M FAD . . . E 2 30.098 32.711 49.977 1 45.02 ? C7M FAD 601 A 1 HETATM 35 C C8 FAD . . . E 2 28.988 33.919 48.034 1 40.07 ? C8 FAD 601 A 1 HETATM 36 C C8M FAD . . . E 2 28.857 32.576 47.351 1 47.42 ? C8M FAD 601 A 1 HETATM 37 C C9 FAD . . . E 2 28.515 35.074 47.4 1 50.85 ? C9 FAD 601 A 1 HETATM 38 C C9A FAD . . . E 2 28.638 36.318 48.03 1 50.58 ? C9A FAD 601 A 1 HETATM 39 N N10 FAD . . . E 2 28.172 37.44 47.437 1 48.04 ? N10 FAD 601 A 1 HETATM 40 C C10 FAD . . . E 2 28.297 38.639 48.038 1 49.47 ? C10 FAD 601 A 1 HETATM 41 C C1' FAD . . . E 2 27.586 37.339 46.13 1 50.31 ? C1' FAD 601 A 1 HETATM 42 C C2' FAD . . . E 2 26.158 37.158 45.857 1 56.52 ? C2' FAD 601 A 1 HETATM 43 O O2' FAD . . . E 2 25.459 36.258 46.605 1 45.59 ? O2' FAD 601 A 1 HETATM 44 C C3' FAD . . . E 2 25.902 37.176 44.381 1 60.78 ? C3' FAD 601 A 1 HETATM 45 O O3' FAD . . . E 2 26.269 38.395 43.821 1 67.13 ? O3' FAD 601 A 1 HETATM 46 C C4' FAD . . . E 2 24.496 36.821 43.872 1 62.2 ? C4' FAD 601 A 1 HETATM 47 O O4' FAD . . . E 2 24.011 35.598 44.405 1 78.74 ? O4' FAD 601 A 1 HETATM 48 C C5' FAD . . . E 2 24.525 36.722 42.411 1 54.93 ? C5' FAD 601 A 1 HETATM 49 O O5' FAD . . . E 2 23.295 36.754 41.631 1 48.67 ? O5' FAD 601 A 1 HETATM 50 P P FAD . . . E 2 22.807 35.423 41.04 1 40.58 ? P FAD 601 A 1 HETATM 51 O O1P FAD . . . E 2 21.339 35.638 40.587 1 63.73 ? O1P FAD 601 A 1 HETATM 52 O O2P FAD . . . E 2 23.694 34.947 39.846 1 36.28 ? O2P FAD 601 A 1 HETATM 53 O O3P FAD . . . E 2 22.844 34.314 42.3 1 36.36 ? O3P FAD 601 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 53 #