data_3UKQ
#
_model_server_result.job_id            6wnDG2ye0jG0R5NDcM7mhA 
_model_server_result.datetime_utc      '2024-11-15 12:32:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ukq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":602}' 
#
_entry.id    3UKQ 
#
_exptl.entry_id    3UKQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              566.302 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            "GALACTOSE-URIDINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UKQ 
_cell.length_a            129.54 
_cell.length_b            135.48 
_cell.length_c            176.15 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UKQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E,F,I,J,M,O 1 1 
B,D,G,H,K,L,N,P 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_645 -x+1,y-1/2,-z+1/2 -1 0 0 0 1 0 0 0 -1 129.54 -67.74 88.075 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
_chem_comp.formula           'C15 H24 N2 O17 P2' 
_chem_comp.formula_weight    566.302 
_chem_comp.id                GDU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GALACTOSE-URIDINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     UDP-D-GALACTOPYRANOSE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 GDU sing 174 n n 
N1 C6 GDU sing 175 n n 
N1 C1D GDU sing 176 n n 
C2 N3 GDU sing 177 n n 
C2 O2 GDU doub 178 n n 
N3 C4 GDU sing 179 n n 
N3 HN3 GDU sing 180 n n 
C4 C5 GDU sing 181 n n 
C4 O4 GDU doub 182 n n 
C5 C6 GDU doub 183 n n 
C5 H5 GDU sing 184 n n 
C6 H6 GDU sing 185 n n 
C1D C2D GDU sing 186 n n 
C1D O4D GDU sing 187 n n 
C1D H1D GDU sing 188 n n 
C2D O2D GDU sing 189 n n 
C2D C3D GDU sing 190 n n 
C2D H2D GDU sing 191 n n 
O2D HO2' GDU sing 192 n n 
C3D C4D GDU sing 193 n n 
C3D O3D GDU sing 194 n n 
C3D H3D GDU sing 195 n n 
C4D O4D GDU sing 196 n n 
C4D C5D GDU sing 197 n n 
C4D H4D GDU sing 198 n n 
O3D HO3' GDU sing 199 n n 
C5D O5D GDU sing 200 n n 
C5D "H5'1" GDU sing 201 n n 
C5D "H5'2" GDU sing 202 n n 
O5D PA GDU sing 203 n n 
PA O1A GDU doub 204 n n 
PA O2A GDU sing 205 n n 
PA O3A GDU sing 206 n n 
O2A HOA2 GDU sing 207 n n 
O3A PB GDU sing 208 n n 
PB O1B GDU doub 209 n n 
PB O2B GDU sing 210 n n 
PB O3B GDU sing 211 n n 
O2B HOB2 GDU sing 212 n n 
O3B C1' GDU sing 213 n n 
C1' C2' GDU sing 214 n n 
C1' O5' GDU sing 215 n n 
C1' H1' GDU sing 216 n n 
C2' C3' GDU sing 217 n n 
C2' O2' GDU sing 218 n n 
C2' H2' GDU sing 219 n n 
C3' C4' GDU sing 220 n n 
C3' O3' GDU sing 221 n n 
C3' H3' GDU sing 222 n n 
C4' C5' GDU sing 223 n n 
C4' O4' GDU sing 224 n n 
C4' H4' GDU sing 225 n n 
C5' C6' GDU sing 226 n n 
C5' O5' GDU sing 227 n n 
C5' H5' GDU sing 228 n n 
C6' O6' GDU sing 229 n n 
C6' "H6'1" GDU sing 230 n n 
C6' "H6'2" GDU sing 231 n n 
O2' HO2A GDU sing 232 n n 
O3' HO3A GDU sing 233 n n 
O4' HO4' GDU sing 234 n n 
O6' HO6' GDU sing 235 n n 
#
_atom_sites.entry_id                     3UKQ 
_atom_sites.fract_transf_matrix[1][1]    0.00772 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005677 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FAD A 1 601 602 FAD FAD . 
F 3 GDU A 1 602 802 GDU GDU . 
G 2 FAD B 1 601 604 FAD FAD . 
H 3 GDU B 1 602 802 GDU GDU . 
I 2 FAD C 1 601 600 FAD FAD . 
J 3 GDU C 1 602 802 GDU GDU . 
K 2 FAD D 1 601 601 FAD FAD . 
L 3 GDU D 1 602 802 GDU GDU . 
M 4 HOH A 1 701 512 HOH HOH . 
M 4 HOH A 2 702 516 HOH HOH . 
M 4 HOH A 3 703 517 HOH HOH . 
M 4 HOH A 4 704 518 HOH HOH . 
M 4 HOH A 5 705 520 HOH HOH . 
M 4 HOH A 6 706 522 HOH HOH . 
M 4 HOH A 7 707 523 HOH HOH . 
M 4 HOH A 8 708 526 HOH HOH . 
M 4 HOH A 9 709 529 HOH HOH . 
M 4 HOH A 10 710 531 HOH HOH . 
M 4 HOH A 11 711 532 HOH HOH . 
M 4 HOH A 12 712 536 HOH HOH . 
M 4 HOH A 13 713 537 HOH HOH . 
M 4 HOH A 14 714 542 HOH HOH . 
M 4 HOH A 15 715 546 HOH HOH . 
M 4 HOH A 16 716 548 HOH HOH . 
M 4 HOH A 17 717 549 HOH HOH . 
M 4 HOH A 18 718 557 HOH HOH . 
M 4 HOH A 19 719 563 HOH HOH . 
M 4 HOH A 20 720 566 HOH HOH . 
N 4 HOH B 1 701 1 HOH HOH . 
N 4 HOH B 2 702 512 HOH HOH . 
N 4 HOH B 3 703 513 HOH HOH . 
N 4 HOH B 4 704 515 HOH HOH . 
N 4 HOH B 5 705 517 HOH HOH . 
N 4 HOH B 6 706 518 HOH HOH . 
N 4 HOH B 7 707 519 HOH HOH . 
N 4 HOH B 8 708 520 HOH HOH . 
N 4 HOH B 9 709 521 HOH HOH . 
N 4 HOH B 10 710 522 HOH HOH . 
N 4 HOH B 11 711 523 HOH HOH . 
N 4 HOH B 12 712 524 HOH HOH . 
N 4 HOH B 13 713 525 HOH HOH . 
N 4 HOH B 14 714 528 HOH HOH . 
N 4 HOH B 15 715 530 HOH HOH . 
N 4 HOH B 16 716 535 HOH HOH . 
N 4 HOH B 17 717 540 HOH HOH . 
N 4 HOH B 18 718 543 HOH HOH . 
N 4 HOH B 19 719 546 HOH HOH . 
N 4 HOH B 20 720 548 HOH HOH . 
N 4 HOH B 21 721 553 HOH HOH . 
N 4 HOH B 22 722 555 HOH HOH . 
N 4 HOH B 23 723 561 HOH HOH . 
N 4 HOH B 24 724 563 HOH HOH . 
N 4 HOH B 25 725 566 HOH HOH . 
O 4 HOH C 1 701 513 HOH HOH . 
O 4 HOH C 2 702 516 HOH HOH . 
O 4 HOH C 3 703 517 HOH HOH . 
O 4 HOH C 4 704 518 HOH HOH . 
O 4 HOH C 5 705 525 HOH HOH . 
O 4 HOH C 6 706 526 HOH HOH . 
O 4 HOH C 7 707 527 HOH HOH . 
O 4 HOH C 8 708 534 HOH HOH . 
O 4 HOH C 9 709 540 HOH HOH . 
O 4 HOH C 10 710 542 HOH HOH . 
O 4 HOH C 11 711 543 HOH HOH . 
O 4 HOH C 12 712 544 HOH HOH . 
O 4 HOH C 13 713 548 HOH HOH . 
O 4 HOH C 14 714 560 HOH HOH . 
O 4 HOH C 15 715 562 HOH HOH . 
P 4 HOH D 1 701 512 HOH HOH . 
P 4 HOH D 2 702 517 HOH HOH . 
P 4 HOH D 3 703 521 HOH HOH . 
P 4 HOH D 4 704 529 HOH HOH . 
P 4 HOH D 5 705 538 HOH HOH . 
P 4 HOH D 6 706 542 HOH HOH . 
P 4 HOH D 7 707 544 HOH HOH . 
P 4 HOH D 8 708 547 HOH HOH . 
P 4 HOH D 9 709 555 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GDU . . . H 3 42.498 110.144 69.115 1 100.49 ? N1 GDU 602 B 1 
HETATM 2 C C2 GDU . . . H 3 43.463 111.067 69.231 1 108.54 ? C2 GDU 602 B 1 
HETATM 3 N N3 GDU . . . H 3 43.863 111.576 70.418 1 103.79 ? N3 GDU 602 B 1 
HETATM 4 C C4 GDU . . . H 3 43.284 111.154 71.543 1 105.4 ? C4 GDU 602 B 1 
HETATM 5 C C5 GDU . . . H 3 42.281 110.2 71.474 1 91.25 ? C5 GDU 602 B 1 
HETATM 6 C C6 GDU . . . H 3 41.89 109.695 70.231 1 83.77 ? C6 GDU 602 B 1 
HETATM 7 O O2 GDU . . . H 3 43.998 111.466 68.224 1 112.58 ? O2 GDU 602 B 1 
HETATM 8 O O4 GDU . . . H 3 43.667 111.644 72.722 1 92.1 ? O4 GDU 602 B 1 
HETATM 9 C C1D GDU . . . H 3 42.098 109.618 67.758 1 104.31 ? C1D GDU 602 B 1 
HETATM 10 C C2D GDU . . . H 3 42.246 108.137 67.678 1 98.79 ? C2D GDU 602 B 1 
HETATM 11 O O2D GDU . . . H 3 43.331 107.798 66.885 1 75.23 ? O2D GDU 602 B 1 
HETATM 12 C C3D GDU . . . H 3 41.009 107.639 67.13 1 108.67 ? C3D GDU 602 B 1 
HETATM 13 C C4D GDU . . . H 3 40.306 108.806 66.622 1 103.55 ? C4D GDU 602 B 1 
HETATM 14 O O4D GDU . . . H 3 40.804 109.914 67.395 1 90.8 ? O4D GDU 602 B 1 
HETATM 15 O O3D GDU . . . H 3 41.214 106.683 66.113 1 101.46 ? O3D GDU 602 B 1 
HETATM 16 C C5D GDU . . . H 3 38.886 108.684 66.92 1 112.01 ? C5D GDU 602 B 1 
HETATM 17 O O5D GDU . . . H 3 38.499 109.289 68.113 1 120.98 ? O5D GDU 602 B 1 
HETATM 18 P PA GDU . . . H 3 37.05 109.045 68.738 1 102.03 ? PA GDU 602 B 1 
HETATM 19 O O1A GDU . . . H 3 37.223 108.128 69.974 1 94.38 ? O1A GDU 602 B 1 
HETATM 20 O O2A GDU . . . H 3 36.427 110.393 69.138 1 97.69 ? O2A GDU 602 B 1 
HETATM 21 O O3A GDU . . . H 3 36.15 108.275 67.654 1 132.25 ? O3A GDU 602 B 1 
HETATM 22 P PB GDU . . . H 3 35.036 107.314 68.124 1 148.19 ? PB GDU 602 B 1 
HETATM 23 O O1B GDU . . . H 3 35.684 106.156 68.738 1 105.09 ? O1B GDU 602 B 1 
HETATM 24 O O2B GDU . . . H 3 34.179 106.89 66.989 1 104.14 ? O2B GDU 602 B 1 
HETATM 25 O O3B GDU . . . H 3 34.258 108.032 69.193 1 148.55 ? O3B GDU 602 B 1 
HETATM 26 C C1' GDU . . . H 3 32.902 108.332 69.075 1 146.19 ? C1' GDU 602 B 1 
HETATM 27 C C2' GDU . . . H 3 32.623 109.476 68.113 1 132.4 ? C2' GDU 602 B 1 
HETATM 28 C C3' GDU . . . H 3 33.349 110.693 68.478 1 134.32 ? C3' GDU 602 B 1 
HETATM 29 C C4' GDU . . . H 3 33.143 111.093 69.846 1 129.6 ? C4' GDU 602 B 1 
HETATM 30 C C5' GDU . . . H 3 33.036 109.97 70.843 1 118.66 ? C5' GDU 602 B 1 
HETATM 31 C C6' GDU . . . H 3 32.305 110.427 72.036 1 100.14 ? C6' GDU 602 B 1 
HETATM 32 O O2' GDU . . . H 3 32.855 109.118 66.752 1 110.01 ? O2' GDU 602 B 1 
HETATM 33 O O3' GDU . . . H 3 32.958 111.764 67.581 1 103.95 ? O3' GDU 602 B 1 
HETATM 34 O O4' GDU . . . H 3 32.043 112.028 69.963 1 135.61 ? O4' GDU 602 B 1 
HETATM 35 O O5' GDU . . . H 3 32.414 108.712 70.331 1 139.8 ? O5' GDU 602 B 1 
HETATM 36 O O6' GDU . . . H 3 31.806 109.447 72.895 1 83.63 ? O6' GDU 602 B 1 
#
_model_server_stats.io_time_ms              85 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    39 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           36 
#