data_3UL8 # _model_server_result.job_id EluiBI-dEEE4htnmO9YV8A _model_server_result.datetime_utc '2024-11-21 17:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ul8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":805}' # _entry.id 3UL8 # _exptl.entry_id 3UL8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.156 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-L-fucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UL8 _cell.length_a 32.04 _cell.length_b 50.5 _cell.length_c 192.78 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UL8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 701 NAG 2 n B NAG 2 B 2 NAG A 703 NAG 2 n B BMA 3 B 3 BMA A 704 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 29 1_555 A SG CYS 16 A CYS 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 240 A CYS 264 1_555 A SG CYS 265 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf3 A SG CYS 242 A CYS 266 1_555 A SG CYS 277 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 11 A ASN 35 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 149 A ASN 173 1_555 C C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.389 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? # _chem_comp.formula 'C6 H12 O5' _chem_comp.formula_weight 164.156 _chem_comp.id FUL _chem_comp.mon_nstd_flag . _chem_comp.name beta-L-fucopyranose _chem_comp.type 'l-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-L-fucose;6-deoxy-beta-L-galactopyranose;L-fucose;fucose;6-DEOXY-BETA-L-GALACTOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FUL sing 107 n n C1 O5 FUL sing 108 n n C1 O1 FUL sing 109 n n C1 H1 FUL sing 110 n n C2 O2 FUL sing 111 n n C2 C3 FUL sing 112 n n C2 H2 FUL sing 113 n n O2 HO2 FUL sing 114 n n C3 O3 FUL sing 115 n n C3 C4 FUL sing 116 n n C3 H3 FUL sing 117 n n O3 HO3 FUL sing 118 n n C4 O4 FUL sing 119 n n C4 C5 FUL sing 120 n n C4 H4 FUL sing 121 n n O4 HO4 FUL sing 122 n n C5 C6 FUL sing 123 n n C5 O5 FUL sing 124 n n C5 H5 FUL sing 125 n n C6 H61 FUL sing 126 n n C6 H62 FUL sing 127 n n C6 H63 FUL sing 128 n n O1 HO1 FUL sing 129 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version FUL LFucpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 FUL b-L-fucopyranose 'COMMON NAME' GMML 1 FUL b-L-Fucp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 FUL Fuc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3UL8 _atom_sites.fract_transf_matrix[1][1] 0.031211 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019802 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 801 801 NAG NAG . D 4 FUL A 1 805 702 FUL FUL . E 5 SO4 A 1 806 901 SO4 SO4 . F 6 HOH A 1 901 904 HOH HOH . F 6 HOH A 2 902 905 HOH HOH . F 6 HOH A 3 903 906 HOH HOH . F 6 HOH A 4 904 907 HOH HOH . F 6 HOH A 5 905 908 HOH HOH . F 6 HOH A 6 906 909 HOH HOH . F 6 HOH A 7 907 911 HOH HOH . F 6 HOH A 8 908 912 HOH HOH . F 6 HOH A 9 909 913 HOH HOH . F 6 HOH A 10 910 914 HOH HOH . F 6 HOH A 11 911 915 HOH HOH . F 6 HOH A 12 912 916 HOH HOH . F 6 HOH A 13 913 918 HOH HOH . F 6 HOH A 14 914 919 HOH HOH . F 6 HOH A 15 915 920 HOH HOH . F 6 HOH A 16 916 921 HOH HOH . F 6 HOH A 17 917 922 HOH HOH . F 6 HOH A 18 918 923 HOH HOH . F 6 HOH A 19 919 924 HOH HOH . F 6 HOH A 20 920 925 HOH HOH . F 6 HOH A 21 921 926 HOH HOH . F 6 HOH A 22 922 927 HOH HOH . F 6 HOH A 23 923 928 HOH HOH . F 6 HOH A 24 924 929 HOH HOH . F 6 HOH A 25 925 930 HOH HOH . F 6 HOH A 26 926 931 HOH HOH . F 6 HOH A 27 927 932 HOH HOH . F 6 HOH A 28 928 933 HOH HOH . F 6 HOH A 29 929 934 HOH HOH . F 6 HOH A 30 930 935 HOH HOH . F 6 HOH A 31 931 936 HOH HOH . F 6 HOH A 32 932 937 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FUL . . . D 4 -6.433 5.525 10.453 1 98.28 ? C1 FUL 805 A 1 HETATM 2 C C2 FUL . . . D 4 -6.082 6.222 9.132 1 98.58 ? C2 FUL 805 A 1 HETATM 3 O O2 FUL . . . D 4 -7.264 6.479 8.383 1 98.24 ? O2 FUL 805 A 1 HETATM 4 C C3 FUL . . . D 4 -5.347 7.53 9.419 1 98.22 ? C3 FUL 805 A 1 HETATM 5 O O3 FUL . . . D 4 -4.076 7.247 9.979 1 97.56 ? O3 FUL 805 A 1 HETATM 6 C C4 FUL . . . D 4 -6.143 8.411 10.384 1 97.84 ? C4 FUL 805 A 1 HETATM 7 O O4 FUL . . . D 4 -5.348 9.522 10.765 1 97.98 ? O4 FUL 805 A 1 HETATM 8 C C5 FUL . . . D 4 -6.555 7.632 11.639 1 97.64 ? C5 FUL 805 A 1 HETATM 9 C C6 FUL . . . D 4 -5.399 7.295 12.573 1 96.42 ? C6 FUL 805 A 1 HETATM 10 O O5 FUL . . . D 4 -7.225 6.39 11.288 1 98.01 ? O5 FUL 805 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 371 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 10 #