data_3ULD # _model_server_result.job_id XZTWeVH9n5B2r_4m-ezt5g _model_server_result.datetime_utc '2024-11-12 20:52:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uld # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 3ULD # _exptl.entry_id 3ULD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.76 _cell.angle_gamma 90 _cell.entry_id 3ULD _cell.length_a 81.301 _cell.length_b 37.672 _cell.length_c 62.378 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ULD _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O3' DC 5 C DC 5 1_555 C P PGN 6 C PGN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.597 ? metalc ? metalc1 A OD1 ASP 17 A ASP 71 1_555 D MG MG . A MG 201 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc2 A OD2 ASP 17 A ASP 71 1_555 E MG MG . A MG 202 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc3 A OE2 GLU 55 A GLU 109 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc4 A OD1 ASN 78 A ASN 132 1_555 D MG MG . A MG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 A OD2 ASP 138 A ASP 192 1_555 E MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc6 D MG MG . A MG 201 1_555 B O3' A 6 B A 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.737 ? metalc ? metalc7 E MG MG . A MG 202 1_555 H O HOH . A HOH 366 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc8 E MG MG . A MG 202 1_555 H O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.781 ? metalc ? metalc9 F MG MG . A MG 203 1_555 H O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc10 F MG MG . A MG 203 1_555 H O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? hydrog WATSON-CRICK hydrog1 B N3 C 2 B C 2 1_555 C N1 PGN 6 C PGN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 C 2 B C 2 1_555 C O6 PGN 6 C PGN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 C 2 B C 2 1_555 C N2 PGN 6 C PGN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 G 3 B G 3 1_555 C N3 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 G 3 B G 3 1_555 C O2 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 G 3 B G 3 1_555 C N4 DC 5 C DC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 A 4 B A 4 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N6 A 4 B A 4 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N3 C 5 B C 5 1_555 C N1 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N4 C 5 B C 5 1_555 C O6 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B O2 C 5 B C 5 1_555 C N2 DG 3 C DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N1 A 6 B A 6 1_555 C N3 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N6 A 6 B A 6 1_555 C O4 DT 2 C DT 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ULD _atom_sites.fract_transf_matrix[1][1] 0.0123 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001458 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026545 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016144 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 201 1 MG MG . E 4 MG A 1 202 2 MG MG . F 4 MG A 1 203 3 MG MG . G 4 MG A 1 204 4 MG MG . H 5 HOH A 1 301 1 HOH HOH . H 5 HOH A 2 302 5 HOH HOH . H 5 HOH A 3 303 6 HOH HOH . H 5 HOH A 4 304 7 HOH HOH . H 5 HOH A 5 305 8 HOH HOH . H 5 HOH A 6 306 9 HOH HOH . H 5 HOH A 7 307 10 HOH HOH . H 5 HOH A 8 308 11 HOH HOH . H 5 HOH A 9 309 13 HOH HOH . H 5 HOH A 10 310 15 HOH HOH . H 5 HOH A 11 311 16 HOH HOH . H 5 HOH A 12 312 17 HOH HOH . H 5 HOH A 13 313 19 HOH HOH . H 5 HOH A 14 314 20 HOH HOH . H 5 HOH A 15 315 22 HOH HOH . H 5 HOH A 16 316 24 HOH HOH . H 5 HOH A 17 317 25 HOH HOH . H 5 HOH A 18 318 26 HOH HOH . H 5 HOH A 19 319 28 HOH HOH . H 5 HOH A 20 320 29 HOH HOH . H 5 HOH A 21 321 30 HOH HOH . H 5 HOH A 22 322 31 HOH HOH . H 5 HOH A 23 323 32 HOH HOH . H 5 HOH A 24 324 33 HOH HOH . H 5 HOH A 25 325 34 HOH HOH . H 5 HOH A 26 326 38 HOH HOH . H 5 HOH A 27 327 39 HOH HOH . H 5 HOH A 28 328 41 HOH HOH . H 5 HOH A 29 329 44 HOH HOH . H 5 HOH A 30 330 45 HOH HOH . H 5 HOH A 31 331 46 HOH HOH . H 5 HOH A 32 332 47 HOH HOH . H 5 HOH A 33 333 48 HOH HOH . H 5 HOH A 34 334 49 HOH HOH . H 5 HOH A 35 335 51 HOH HOH . H 5 HOH A 36 336 52 HOH HOH . H 5 HOH A 37 337 53 HOH HOH . H 5 HOH A 38 338 54 HOH HOH . H 5 HOH A 39 339 2 HOH HOH . H 5 HOH A 40 340 3 HOH HOH . H 5 HOH A 41 341 4 HOH HOH . H 5 HOH A 42 342 56 HOH HOH . H 5 HOH A 43 343 57 HOH HOH . H 5 HOH A 44 344 58 HOH HOH . H 5 HOH A 45 345 59 HOH HOH . H 5 HOH A 46 346 60 HOH HOH . H 5 HOH A 47 347 61 HOH HOH . H 5 HOH A 48 348 62 HOH HOH . H 5 HOH A 49 349 64 HOH HOH . H 5 HOH A 50 350 65 HOH HOH . H 5 HOH A 51 351 66 HOH HOH . H 5 HOH A 52 352 67 HOH HOH . H 5 HOH A 53 353 68 HOH HOH . H 5 HOH A 54 354 69 HOH HOH . H 5 HOH A 55 355 70 HOH HOH . H 5 HOH A 56 356 73 HOH HOH . H 5 HOH A 57 357 74 HOH HOH . H 5 HOH A 58 358 75 HOH HOH . H 5 HOH A 59 359 76 HOH HOH . H 5 HOH A 60 360 77 HOH HOH . H 5 HOH A 61 361 78 HOH HOH . H 5 HOH A 62 362 79 HOH HOH . H 5 HOH A 63 363 80 HOH HOH . H 5 HOH A 64 364 81 HOH HOH . H 5 HOH A 65 365 82 HOH HOH . H 5 HOH A 66 366 83 HOH HOH . H 5 HOH A 67 367 84 HOH HOH . H 5 HOH A 68 368 86 HOH HOH . H 5 HOH A 69 369 87 HOH HOH . H 5 HOH A 70 370 88 HOH HOH . H 5 HOH A 71 371 89 HOH HOH . H 5 HOH A 72 372 90 HOH HOH . H 5 HOH A 73 373 91 HOH HOH . H 5 HOH A 74 374 92 HOH HOH . H 5 HOH A 75 375 94 HOH HOH . H 5 HOH A 76 376 96 HOH HOH . H 5 HOH A 77 377 97 HOH HOH . H 5 HOH A 78 378 98 HOH HOH . H 5 HOH A 79 379 99 HOH HOH . H 5 HOH A 80 380 100 HOH HOH . H 5 HOH A 81 381 103 HOH HOH . H 5 HOH A 82 382 104 HOH HOH . H 5 HOH A 83 383 105 HOH HOH . H 5 HOH A 84 384 106 HOH HOH . H 5 HOH A 85 385 107 HOH HOH . H 5 HOH A 86 386 108 HOH HOH . H 5 HOH A 87 387 109 HOH HOH . H 5 HOH A 88 388 110 HOH HOH . H 5 HOH A 89 389 111 HOH HOH . H 5 HOH A 90 390 112 HOH HOH . H 5 HOH A 91 391 113 HOH HOH . H 5 HOH A 92 392 114 HOH HOH . H 5 HOH A 93 393 115 HOH HOH . H 5 HOH A 94 394 116 HOH HOH . H 5 HOH A 95 395 120 HOH HOH . H 5 HOH A 96 396 123 HOH HOH . H 5 HOH A 97 397 124 HOH HOH . I 5 HOH B 1 101 14 HOH HOH . I 5 HOH B 2 102 35 HOH HOH . I 5 HOH B 3 103 36 HOH HOH . I 5 HOH B 4 104 42 HOH HOH . I 5 HOH B 5 105 50 HOH HOH . I 5 HOH B 6 106 63 HOH HOH . I 5 HOH B 7 107 71 HOH HOH . I 5 HOH B 8 108 93 HOH HOH . I 5 HOH B 9 109 95 HOH HOH . I 5 HOH B 10 110 117 HOH HOH . I 5 HOH B 11 111 121 HOH HOH . I 5 HOH B 12 112 122 HOH HOH . J 5 HOH C 1 101 12 HOH HOH . J 5 HOH C 2 102 18 HOH HOH . J 5 HOH C 3 103 21 HOH HOH . J 5 HOH C 4 104 23 HOH HOH . J 5 HOH C 5 105 27 HOH HOH . J 5 HOH C 6 106 37 HOH HOH . J 5 HOH C 7 107 40 HOH HOH . J 5 HOH C 8 108 43 HOH HOH . J 5 HOH C 9 109 55 HOH HOH . J 5 HOH C 10 110 72 HOH HOH . J 5 HOH C 11 111 85 HOH HOH . J 5 HOH C 12 112 101 HOH HOH . J 5 HOH C 13 113 102 HOH HOH . J 5 HOH C 14 114 118 HOH HOH . J 5 HOH C 15 115 119 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 13.179 _atom_site.Cartn_y -3.278 _atom_site.Cartn_z 18.431 _atom_site.occupancy 0.4 _atom_site.B_iso_or_equiv 30.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 201 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #