data_3ULF
#
_model_server_result.job_id            GvNVM08GHTSKfhDX3kMVaA 
_model_server_result.datetime_utc      '2024-11-07 05:47:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3ulf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":501}' 
#
_entry.id    3ULF 
#
_exptl.entry_id    3ULF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3ULF 
_cell.length_a            73.98 
_cell.length_b            73.98 
_cell.length_c            176.18 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ULF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        78 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA hexameric 6 software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,G,H,I,O,P 1 1 
C,D,J,K,Q 2 1 
E,F,L,M,N,R,S 3 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
? 2 L N N 
? 2 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 87 A CYS 254 1_555 G C4A FMN . A FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
covale ? covale2 B SG CYS 87 B CYS 254 1_555 H C4A FMN . B FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
covale ? covale3 C SG CYS 87 C CYS 254 1_555 J C4A FMN . C FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? 
covale ? covale4 D SG CYS 87 D CYS 254 1_555 K C4A FMN . D FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? 
covale ? covale5 E SG CYS 87 E CYS 254 1_555 L C4A FMN . E FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
covale ? covale6 F SG CYS 87 F CYS 254 1_555 M C4A FMN . F FMN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.873 ? 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     3ULF 
_atom_sites.fract_transf_matrix[1][1]    0.013517 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013517 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005676 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 FMN A 1 501 501 FMN FMN . 
H 2 FMN B 1 501 501 FMN FMN . 
I 3 PO4 B 1 502 2 PO4 PO4 . 
J 2 FMN C 1 501 501 FMN FMN . 
K 2 FMN D 1 501 501 FMN FMN . 
L 2 FMN E 1 501 501 FMN FMN . 
M 2 FMN F 1 501 501 FMN FMN . 
N 3 PO4 F 1 502 1 PO4 PO4 . 
O 4 HOH A 1 601 1 HOH HOH . 
O 4 HOH A 2 602 22 HOH HOH . 
O 4 HOH A 3 603 56 HOH HOH . 
O 4 HOH A 4 604 58 HOH HOH . 
O 4 HOH A 5 605 59 HOH HOH . 
O 4 HOH A 6 606 88 HOH HOH . 
O 4 HOH A 7 607 89 HOH HOH . 
O 4 HOH A 8 608 90 HOH HOH . 
O 4 HOH A 9 609 91 HOH HOH . 
O 4 HOH A 10 610 92 HOH HOH . 
O 4 HOH A 11 611 113 HOH HOH . 
O 4 HOH A 12 612 121 HOH HOH . 
O 4 HOH A 13 613 125 HOH HOH . 
O 4 HOH A 14 614 126 HOH HOH . 
O 4 HOH A 15 615 127 HOH HOH . 
O 4 HOH A 16 616 128 HOH HOH . 
O 4 HOH A 17 617 129 HOH HOH . 
O 4 HOH A 18 618 130 HOH HOH . 
O 4 HOH A 19 619 131 HOH HOH . 
O 4 HOH A 20 620 132 HOH HOH . 
O 4 HOH A 21 621 134 HOH HOH . 
O 4 HOH A 22 622 135 HOH HOH . 
O 4 HOH A 23 623 138 HOH HOH . 
O 4 HOH A 24 624 139 HOH HOH . 
O 4 HOH A 25 625 140 HOH HOH . 
O 4 HOH A 26 626 117 HOH HOH . 
P 4 HOH B 1 601 33 HOH HOH . 
P 4 HOH B 2 602 84 HOH HOH . 
P 4 HOH B 3 603 85 HOH HOH . 
P 4 HOH B 4 604 86 HOH HOH . 
P 4 HOH B 5 605 87 HOH HOH . 
P 4 HOH B 6 606 93 HOH HOH . 
P 4 HOH B 7 607 94 HOH HOH . 
P 4 HOH B 8 608 95 HOH HOH . 
P 4 HOH B 9 609 96 HOH HOH . 
P 4 HOH B 10 610 97 HOH HOH . 
P 4 HOH B 11 611 98 HOH HOH . 
P 4 HOH B 12 612 99 HOH HOH . 
P 4 HOH B 13 613 100 HOH HOH . 
P 4 HOH B 14 614 101 HOH HOH . 
P 4 HOH B 15 615 102 HOH HOH . 
P 4 HOH B 16 616 103 HOH HOH . 
P 4 HOH B 17 617 123 HOH HOH . 
P 4 HOH B 18 618 124 HOH HOH . 
P 4 HOH B 19 619 137 HOH HOH . 
Q 4 HOH C 1 601 104 HOH HOH . 
R 4 HOH E 1 601 64 HOH HOH . 
R 4 HOH E 2 602 105 HOH HOH . 
R 4 HOH E 3 603 106 HOH HOH . 
R 4 HOH E 4 604 107 HOH HOH . 
R 4 HOH E 5 605 108 HOH HOH . 
R 4 HOH E 6 606 110 HOH HOH . 
R 4 HOH E 7 607 111 HOH HOH . 
R 4 HOH E 8 608 112 HOH HOH . 
R 4 HOH E 9 609 114 HOH HOH . 
R 4 HOH E 10 610 115 HOH HOH . 
R 4 HOH E 11 611 133 HOH HOH . 
R 4 HOH E 12 612 136 HOH HOH . 
R 4 HOH E 13 613 141 HOH HOH . 
R 4 HOH E 14 614 142 HOH HOH . 
S 4 HOH F 1 601 66 HOH HOH . 
S 4 HOH F 2 602 67 HOH HOH . 
S 4 HOH F 3 603 69 HOH HOH . 
S 4 HOH F 4 604 78 HOH HOH . 
S 4 HOH F 5 605 79 HOH HOH . 
S 4 HOH F 6 606 80 HOH HOH . 
S 4 HOH F 7 607 81 HOH HOH . 
S 4 HOH F 8 608 82 HOH HOH . 
S 4 HOH F 9 609 83 HOH HOH . 
S 4 HOH F 10 610 109 HOH HOH . 
S 4 HOH F 11 611 116 HOH HOH . 
S 4 HOH F 12 612 118 HOH HOH . 
S 4 HOH F 13 613 119 HOH HOH . 
S 4 HOH F 14 614 120 HOH HOH . 
S 4 HOH F 15 615 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . M 2 28.305 -44.751 -1.037 1 63.01 ? N1 FMN 501 F 1 
HETATM 2 C C2 FMN . . . M 2 29.095 -44.408 0.043 1 60.84 ? C2 FMN 501 F 1 
HETATM 3 O O2 FMN . . . M 2 29.58 -45.289 0.748 1 66.66 ? O2 FMN 501 F 1 
HETATM 4 N N3 FMN . . . M 2 29.348 -43.087 0.353 1 56.21 ? N3 FMN 501 F 1 
HETATM 5 C C4 FMN . . . M 2 28.827 -42.064 -0.41 1 60.06 ? C4 FMN 501 F 1 
HETATM 6 O O4 FMN . . . M 2 29.136 -40.907 -0.126 1 52.05 ? O4 FMN 501 F 1 
HETATM 7 C C4A FMN . . . M 2 28.409 -42.387 -1.854 1 72.36 ? C4A FMN 501 F 1 
HETATM 8 N N5 FMN . . . M 2 27.424 -41.435 -2.378 1 74.34 ? N5 FMN 501 F 1 
HETATM 9 C C5A FMN . . . M 2 26.647 -41.813 -3.455 1 74.01 ? C5A FMN 501 F 1 
HETATM 10 C C6 FMN . . . M 2 26.09 -40.835 -4.268 1 71.88 ? C6 FMN 501 F 1 
HETATM 11 C C7 FMN . . . M 2 25.302 -41.197 -5.349 1 69.7 ? C7 FMN 501 F 1 
HETATM 12 C C7M FMN . . . M 2 24.519 -40.142 -6.071 1 61.36 ? C7M FMN 501 F 1 
HETATM 13 C C8 FMN . . . M 2 25.073 -42.541 -5.623 1 69.82 ? C8 FMN 501 F 1 
HETATM 14 C C8M FMN . . . M 2 24.31 -42.929 -6.856 1 60.5 ? C8M FMN 501 F 1 
HETATM 15 C C9 FMN . . . M 2 25.632 -43.521 -4.81 1 68.65 ? C9 FMN 501 F 1 
HETATM 16 C C9A FMN . . . M 2 26.421 -43.162 -3.725 1 71.91 ? C9A FMN 501 F 1 
HETATM 17 N N10 FMN . . . M 2 26.97 -44.144 -2.917 1 70.52 ? N10 FMN 501 F 1 
HETATM 18 C C10 FMN . . . M 2 27.755 -43.775 -1.84 1 67.92 ? C10 FMN 501 F 1 
HETATM 19 C C1' FMN . . . M 2 26.359 -45.517 -2.925 1 63.32 ? C1' FMN 501 F 1 
HETATM 20 C C2' FMN . . . M 2 27.318 -46.513 -3.574 1 66.56 ? C2' FMN 501 F 1 
HETATM 21 O O2' FMN . . . M 2 27.827 -45.996 -4.784 1 50.81 ? O2' FMN 501 F 1 
HETATM 22 C C3' FMN . . . M 2 26.618 -47.842 -3.827 1 66.86 ? C3' FMN 501 F 1 
HETATM 23 O O3' FMN . . . M 2 25.336 -47.605 -4.353 1 70.83 ? O3' FMN 501 F 1 
HETATM 24 C C4' FMN . . . M 2 26.509 -48.623 -2.523 1 64.38 ? C4' FMN 501 F 1 
HETATM 25 O O4' FMN . . . M 2 27.785 -49.109 -2.163 1 68.52 ? O4' FMN 501 F 1 
HETATM 26 C C5' FMN . . . M 2 25.537 -49.795 -2.611 1 58.24 ? C5' FMN 501 F 1 
HETATM 27 O O5' FMN . . . M 2 25.649 -50.446 -3.856 1 58.18 ? O5' FMN 501 F 1 
HETATM 28 P P FMN . . . M 2 26.639 -51.706 -4.02 1 64.07 ? P FMN 501 F 1 
HETATM 29 O O1P FMN . . . M 2 28.03 -51.272 -3.63 1 55.26 ? O1P FMN 501 F 1 
HETATM 30 O O2P FMN . . . M 2 26.639 -52.186 -5.451 1 58.1 ? O2P FMN 501 F 1 
HETATM 31 O O3P FMN . . . M 2 26.203 -52.82 -3.1 1 64.62 ? O3P FMN 501 F 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#