data_3ULG # _model_server_result.job_id YPHbyt1YACqrWpGel_5eMg _model_server_result.datetime_utc '2024-10-19 23:45:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ulg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":136}' # _entry.id 3ULG # _exptl.entry_id 3ULG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 137.327 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BARIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ULG _cell.length_a 95.21 _cell.length_b 95.21 _cell.length_c 62.986 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ULG _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1,2,3 B,F,G,H,J 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -y,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -47.605 82.454279 0 3 'crystal symmetry operation' 3_455 -x+y-1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -95.21 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 10 A ASP 10 1_555 C BA BA . A BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc2 A OD1 ASP 14 A ASP 14 1_555 C BA BA . A BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc3 A OD2 ASP 14 A ASP 14 1_555 C BA BA . A BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.267 ? metalc ? metalc4 A O ALA 16 A ALA 16 1_555 C BA BA . A BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc5 A OE1 GLU 21 A GLU 21 1_555 C BA BA . A BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.059 ? metalc ? metalc6 A OE2 GLU 21 A GLU 21 1_555 C BA BA . A BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.146 ? metalc ? metalc7 A O LYS 43 A LYS 43 1_555 E BA BA . A BA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc8 A OD1 ASP 46 A ASP 46 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc9 A O ASP 46 A ASP 46 1_555 E BA BA . A BA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? metalc ? metalc10 A O ALA 47 A ALA 47 1_555 E BA BA . A BA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.399 ? metalc ? metalc11 A OD1 ASP 48 A ASP 48 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? metalc ? metalc12 A OD2 ASP 48 A ASP 48 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc13 A OD1 ASN 50 A ASN 50 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc14 A O GLU 52 A GLU 52 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc15 A OE1 GLU 57 A GLU 57 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc16 A OE2 GLU 57 A GLU 57 1_555 D BA BA . A BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc17 C BA BA . A BA 135 1_555 I O HOH . A HOH 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.707 ? metalc ? metalc18 E BA BA . A BA 137 1_555 I O HOH . A HOH 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.391 ? metalc ? metalc19 E BA BA . A BA 137 1_555 I O HOH . A HOH 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.741 ? metalc ? metalc20 B OD1 ASP 10 B ASP 10 1_555 F BA BA . B BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc21 B OD1 ASP 14 B ASP 14 1_555 F BA BA . B BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc22 B OE2 GLU 21 B GLU 21 1_555 F BA BA . B BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc23 B OE1 GLU 21 B GLU 21 1_555 F BA BA . B BA 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.104 ? metalc ? metalc24 B O LYS 43 B LYS 43 1_555 H BA BA . B BA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc25 B OD1 ASP 46 B ASP 46 1_555 G BA BA . B BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc26 B O ASP 46 B ASP 46 1_555 H BA BA . B BA 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc27 B OD1 ASN 50 B ASN 50 1_555 G BA BA . B BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc28 B OE2 GLU 57 B GLU 57 1_555 G BA BA . B BA 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? metalc ? metalc29 F BA BA . B BA 135 1_555 J O HOH . B HOH 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.887 ? metalc ? metalc30 H BA BA . B BA 137 1_555 J O HOH . B HOH 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.18 ? metalc ? metalc31 H BA BA . B BA 137 1_555 J O HOH . B HOH 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? # _chem_comp.formula 'Ba 2' _chem_comp.formula_weight 137.327 _chem_comp.id BA _chem_comp.mon_nstd_flag . _chem_comp.name 'BARIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3ULG _atom_sites.fract_transf_matrix[1][1] 0.010503 _atom_sites.fract_transf_matrix[1][2] 0.006064 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012128 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BA A 1 135 1 BA BA . D 2 BA A 1 136 2 BA BA . E 2 BA A 1 137 3 BA BA . F 2 BA B 1 135 4 BA BA . G 2 BA B 1 136 5 BA BA . H 2 BA B 1 137 6 BA BA . I 3 HOH A 1 138 3 HOH HOH . I 3 HOH A 2 139 5 HOH HOH . I 3 HOH A 3 140 6 HOH HOH . I 3 HOH A 4 141 9 HOH HOH . I 3 HOH A 5 142 10 HOH HOH . I 3 HOH A 6 143 12 HOH HOH . I 3 HOH A 7 144 13 HOH HOH . I 3 HOH A 8 145 16 HOH HOH . I 3 HOH A 9 146 18 HOH HOH . I 3 HOH A 10 147 21 HOH HOH . J 3 HOH B 1 138 1 HOH HOH . J 3 HOH B 2 139 2 HOH HOH . J 3 HOH B 3 140 4 HOH HOH . J 3 HOH B 4 141 7 HOH HOH . J 3 HOH B 5 142 8 HOH HOH . J 3 HOH B 6 143 11 HOH HOH . J 3 HOH B 7 144 14 HOH HOH . J 3 HOH B 8 145 15 HOH HOH . J 3 HOH B 9 146 17 HOH HOH . J 3 HOH B 10 147 19 HOH HOH . J 3 HOH B 11 148 20 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol BA _atom_site.label_atom_id BA _atom_site.label_comp_id BA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x -25.83 _atom_site.Cartn_y 7.433 _atom_site.Cartn_z -22.815 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 97.5 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id BA _atom_site.auth_comp_id BA _atom_site.auth_seq_id 136 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #