data_3ULY
#
_model_server_result.job_id            Yu0AW18IpxQScKqkf1FDtA 
_model_server_result.datetime_utc      '2024-11-28 00:03:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3uly 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":412}' 
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_entry.id    3ULY 
#
_exptl.entry_id    3ULY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          104.52 
_cell.angle_gamma         90 
_cell.entry_id            3ULY 
_cell.length_a            172.377 
_cell.length_b            46.033 
_cell.length_c            68.557 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ULY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_554 -x,y,-z-1 -1 0 0 0 1 0 0 0 -1 17.18847 0 -66.367302 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             266 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              267 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             322 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              323 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.033 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3ULY 
_atom_sites.fract_transf_matrix[1][1]    0.005801 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001502 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.021724 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015068 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 412 1 GOL GOL . 
D 4 HOH A 1 413 6 HOH HOH . 
D 4 HOH A 2 414 7 HOH HOH . 
D 4 HOH A 3 415 8 HOH HOH . 
D 4 HOH A 4 416 9 HOH HOH . 
D 4 HOH A 5 417 10 HOH HOH . 
D 4 HOH A 6 418 11 HOH HOH . 
D 4 HOH A 7 419 12 HOH HOH . 
D 4 HOH A 8 420 13 HOH HOH . 
D 4 HOH A 9 421 14 HOH HOH . 
D 4 HOH A 10 422 15 HOH HOH . 
D 4 HOH A 11 423 16 HOH HOH . 
D 4 HOH A 12 424 17 HOH HOH . 
D 4 HOH A 13 425 18 HOH HOH . 
D 4 HOH A 14 426 19 HOH HOH . 
D 4 HOH A 15 427 20 HOH HOH . 
D 4 HOH A 16 428 21 HOH HOH . 
D 4 HOH A 17 429 22 HOH HOH . 
D 4 HOH A 18 430 23 HOH HOH . 
D 4 HOH A 19 431 24 HOH HOH . 
D 4 HOH A 20 432 25 HOH HOH . 
D 4 HOH A 21 433 26 HOH HOH . 
D 4 HOH A 22 434 27 HOH HOH . 
D 4 HOH A 23 435 28 HOH HOH . 
D 4 HOH A 24 436 29 HOH HOH . 
D 4 HOH A 25 437 30 HOH HOH . 
D 4 HOH A 26 438 31 HOH HOH . 
D 4 HOH A 27 439 32 HOH HOH . 
D 4 HOH A 28 440 33 HOH HOH . 
D 4 HOH A 29 441 34 HOH HOH . 
D 4 HOH A 30 442 35 HOH HOH . 
D 4 HOH A 31 443 36 HOH HOH . 
D 4 HOH A 32 444 37 HOH HOH . 
D 4 HOH A 33 445 38 HOH HOH . 
D 4 HOH A 34 446 39 HOH HOH . 
D 4 HOH A 35 447 40 HOH HOH . 
D 4 HOH A 36 448 41 HOH HOH . 
D 4 HOH A 37 449 42 HOH HOH . 
D 4 HOH A 38 450 43 HOH HOH . 
D 4 HOH A 39 451 44 HOH HOH . 
D 4 HOH A 40 452 45 HOH HOH . 
D 4 HOH A 41 453 46 HOH HOH . 
D 4 HOH A 42 454 48 HOH HOH . 
D 4 HOH A 43 455 50 HOH HOH . 
D 4 HOH A 44 456 51 HOH HOH . 
D 4 HOH A 45 457 52 HOH HOH . 
D 4 HOH A 46 458 53 HOH HOH . 
D 4 HOH A 47 459 54 HOH HOH . 
D 4 HOH A 48 460 55 HOH HOH . 
D 4 HOH A 49 461 56 HOH HOH . 
D 4 HOH A 50 462 57 HOH HOH . 
D 4 HOH A 51 463 58 HOH HOH . 
D 4 HOH A 52 464 59 HOH HOH . 
D 4 HOH A 53 465 61 HOH HOH . 
D 4 HOH A 54 466 62 HOH HOH . 
D 4 HOH A 55 467 63 HOH HOH . 
D 4 HOH A 56 468 64 HOH HOH . 
D 4 HOH A 57 469 65 HOH HOH . 
D 4 HOH A 58 470 66 HOH HOH . 
D 4 HOH A 59 471 68 HOH HOH . 
D 4 HOH A 60 472 69 HOH HOH . 
D 4 HOH A 61 473 70 HOH HOH . 
D 4 HOH A 62 474 71 HOH HOH . 
D 4 HOH A 63 475 72 HOH HOH . 
D 4 HOH A 64 476 73 HOH HOH . 
D 4 HOH A 65 477 74 HOH HOH . 
D 4 HOH A 66 478 75 HOH HOH . 
D 4 HOH A 67 479 76 HOH HOH . 
D 4 HOH A 68 480 77 HOH HOH . 
D 4 HOH A 69 481 78 HOH HOH . 
D 4 HOH A 70 482 79 HOH HOH . 
D 4 HOH A 71 483 80 HOH HOH . 
D 4 HOH A 72 484 81 HOH HOH . 
D 4 HOH A 73 485 82 HOH HOH . 
D 4 HOH A 74 486 83 HOH HOH . 
D 4 HOH A 75 487 1 HOH HOH . 
D 4 HOH A 76 488 2 HOH HOH . 
D 4 HOH A 77 489 3 HOH HOH . 
D 4 HOH A 78 490 5 HOH HOH . 
E 4 HOH B 1 300 4 HOH HOH . 
E 4 HOH B 2 301 47 HOH HOH . 
E 4 HOH B 3 302 49 HOH HOH . 
E 4 HOH B 4 303 60 HOH HOH . 
E 4 HOH B 5 304 67 HOH HOH . 
E 4 HOH B 6 305 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 44.951 3.036 44.157 1 79.31 ? C1 GOL 412 A 1 
HETATM 2 O O1 GOL . . . C 3 44.357 1.912 44.775 1 70.18 ? O1 GOL 412 A 1 
HETATM 3 C C2 GOL . . . C 3 45.146 4.176 45.151 1 87.29 ? C2 GOL 412 A 1 
HETATM 4 O O2 GOL . . . C 3 46.203 4.998 44.702 1 87.64 ? O2 GOL 412 A 1 
HETATM 5 C C3 GOL . . . C 3 43.87 5.008 45.239 1 88.77 ? C3 GOL 412 A 1 
HETATM 6 O O3 GOL . . . C 3 44.034 6.04 46.191 1 93.95 ? O3 GOL 412 A 1 
#
_model_server_stats.io_time_ms              105 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#