data_3UM2
#
_model_server_result.job_id            Mf1JMD-sB2cTW61uTgNnZQ 
_model_server_result.datetime_utc      '2024-11-22 18:55:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3um2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":378}' 
#
_entry.id    3UM2 
#
_exptl.entry_id    3UM2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UM2 
_cell.length_a            69.218 
_cell.length_b            111.36 
_cell.length_c            116.039 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,H,I 1 1 
C,D,G,J,K 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 69.218 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 266 A CYS 267 1_555 A SG CYS 322 A CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 C SG CYS 266 D CYS 267 1_555 C SG CYS 322 D CYS 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3UM2 
_atom_sites.fract_transf_matrix[1][1]    0.014447 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00898 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 1 1 GOL GOL . 
F 3 GOL A 1 378 2 GOL GOL . 
G 3 GOL D 1 378 3 GOL GOL . 
H 4 HOH A 1 379 1 HOH HOH . 
H 4 HOH A 2 380 3 HOH HOH . 
H 4 HOH A 3 381 5 HOH HOH . 
H 4 HOH A 4 382 6 HOH HOH . 
H 4 HOH A 5 383 8 HOH HOH . 
H 4 HOH A 6 384 9 HOH HOH . 
H 4 HOH A 7 385 10 HOH HOH . 
H 4 HOH A 8 386 11 HOH HOH . 
H 4 HOH A 9 387 14 HOH HOH . 
H 4 HOH A 10 388 15 HOH HOH . 
H 4 HOH A 11 389 17 HOH HOH . 
H 4 HOH A 12 390 18 HOH HOH . 
H 4 HOH A 13 391 19 HOH HOH . 
H 4 HOH A 14 392 20 HOH HOH . 
H 4 HOH A 15 393 21 HOH HOH . 
H 4 HOH A 16 394 22 HOH HOH . 
H 4 HOH A 17 395 23 HOH HOH . 
H 4 HOH A 18 396 25 HOH HOH . 
H 4 HOH A 19 397 26 HOH HOH . 
H 4 HOH A 20 398 27 HOH HOH . 
H 4 HOH A 21 399 31 HOH HOH . 
H 4 HOH A 22 400 33 HOH HOH . 
H 4 HOH A 23 401 36 HOH HOH . 
H 4 HOH A 24 402 38 HOH HOH . 
H 4 HOH A 25 403 40 HOH HOH . 
H 4 HOH A 26 404 43 HOH HOH . 
H 4 HOH A 27 405 44 HOH HOH . 
H 4 HOH A 28 406 47 HOH HOH . 
H 4 HOH A 29 407 48 HOH HOH . 
H 4 HOH A 30 408 49 HOH HOH . 
H 4 HOH A 31 409 56 HOH HOH . 
H 4 HOH A 32 410 58 HOH HOH . 
H 4 HOH A 33 411 59 HOH HOH . 
H 4 HOH A 34 412 60 HOH HOH . 
H 4 HOH A 35 413 61 HOH HOH . 
H 4 HOH A 36 414 62 HOH HOH . 
H 4 HOH A 37 415 63 HOH HOH . 
H 4 HOH A 38 416 66 HOH HOH . 
H 4 HOH A 39 417 68 HOH HOH . 
H 4 HOH A 40 418 74 HOH HOH . 
H 4 HOH A 41 419 77 HOH HOH . 
H 4 HOH A 42 420 78 HOH HOH . 
H 4 HOH A 43 421 80 HOH HOH . 
H 4 HOH A 44 422 81 HOH HOH . 
H 4 HOH A 45 423 82 HOH HOH . 
H 4 HOH A 46 424 83 HOH HOH . 
H 4 HOH A 47 425 84 HOH HOH . 
H 4 HOH A 48 426 85 HOH HOH . 
H 4 HOH A 49 427 86 HOH HOH . 
H 4 HOH A 50 428 89 HOH HOH . 
H 4 HOH A 51 429 94 HOH HOH . 
H 4 HOH A 52 430 100 HOH HOH . 
H 4 HOH A 53 431 101 HOH HOH . 
H 4 HOH A 54 432 102 HOH HOH . 
H 4 HOH A 55 433 103 HOH HOH . 
H 4 HOH A 56 434 104 HOH HOH . 
H 4 HOH A 57 435 105 HOH HOH . 
H 4 HOH A 58 436 110 HOH HOH . 
H 4 HOH A 59 437 111 HOH HOH . 
H 4 HOH A 60 438 113 HOH HOH . 
H 4 HOH A 61 439 114 HOH HOH . 
H 4 HOH A 62 440 115 HOH HOH . 
H 4 HOH A 63 441 116 HOH HOH . 
H 4 HOH A 64 442 117 HOH HOH . 
H 4 HOH A 65 443 118 HOH HOH . 
H 4 HOH A 66 444 120 HOH HOH . 
H 4 HOH A 67 445 121 HOH HOH . 
H 4 HOH A 68 446 122 HOH HOH . 
H 4 HOH A 69 447 123 HOH HOH . 
H 4 HOH A 70 448 124 HOH HOH . 
H 4 HOH A 71 449 125 HOH HOH . 
H 4 HOH A 72 450 127 HOH HOH . 
H 4 HOH A 73 451 128 HOH HOH . 
H 4 HOH A 74 452 129 HOH HOH . 
H 4 HOH A 75 453 130 HOH HOH . 
H 4 HOH A 76 454 133 HOH HOH . 
H 4 HOH A 77 455 136 HOH HOH . 
H 4 HOH A 78 456 147 HOH HOH . 
H 4 HOH A 79 457 150 HOH HOH . 
H 4 HOH A 80 458 153 HOH HOH . 
H 4 HOH A 81 459 155 HOH HOH . 
H 4 HOH A 82 460 161 HOH HOH . 
H 4 HOH A 83 461 163 HOH HOH . 
H 4 HOH A 84 462 165 HOH HOH . 
H 4 HOH A 85 463 167 HOH HOH . 
H 4 HOH A 86 464 174 HOH HOH . 
H 4 HOH A 87 465 175 HOH HOH . 
H 4 HOH A 88 466 176 HOH HOH . 
H 4 HOH A 89 467 179 HOH HOH . 
I 4 HOH B 1 30 30 HOH HOH . 
I 4 HOH B 2 71 71 HOH HOH . 
I 4 HOH B 3 73 73 HOH HOH . 
I 4 HOH B 4 75 75 HOH HOH . 
I 4 HOH B 5 107 107 HOH HOH . 
I 4 HOH B 6 169 169 HOH HOH . 
J 4 HOH D 1 379 2 HOH HOH . 
J 4 HOH D 2 380 4 HOH HOH . 
J 4 HOH D 3 381 7 HOH HOH . 
J 4 HOH D 4 382 12 HOH HOH . 
J 4 HOH D 5 383 13 HOH HOH . 
J 4 HOH D 6 384 16 HOH HOH . 
J 4 HOH D 7 385 24 HOH HOH . 
J 4 HOH D 8 386 28 HOH HOH . 
J 4 HOH D 9 387 29 HOH HOH . 
J 4 HOH D 10 388 34 HOH HOH . 
J 4 HOH D 11 389 35 HOH HOH . 
J 4 HOH D 12 390 37 HOH HOH . 
J 4 HOH D 13 391 39 HOH HOH . 
J 4 HOH D 14 392 41 HOH HOH . 
J 4 HOH D 15 393 42 HOH HOH . 
J 4 HOH D 16 394 45 HOH HOH . 
J 4 HOH D 17 395 46 HOH HOH . 
J 4 HOH D 18 396 50 HOH HOH . 
J 4 HOH D 19 397 51 HOH HOH . 
J 4 HOH D 20 398 52 HOH HOH . 
J 4 HOH D 21 399 53 HOH HOH . 
J 4 HOH D 22 400 54 HOH HOH . 
J 4 HOH D 23 401 55 HOH HOH . 
J 4 HOH D 24 402 57 HOH HOH . 
J 4 HOH D 25 403 64 HOH HOH . 
J 4 HOH D 26 404 65 HOH HOH . 
J 4 HOH D 27 405 67 HOH HOH . 
J 4 HOH D 28 406 70 HOH HOH . 
J 4 HOH D 29 407 76 HOH HOH . 
J 4 HOH D 30 408 79 HOH HOH . 
J 4 HOH D 31 409 87 HOH HOH . 
J 4 HOH D 32 410 88 HOH HOH . 
J 4 HOH D 33 411 91 HOH HOH . 
J 4 HOH D 34 412 92 HOH HOH . 
J 4 HOH D 35 413 93 HOH HOH . 
J 4 HOH D 36 414 95 HOH HOH . 
J 4 HOH D 37 415 96 HOH HOH . 
J 4 HOH D 38 416 97 HOH HOH . 
J 4 HOH D 39 417 98 HOH HOH . 
J 4 HOH D 40 418 99 HOH HOH . 
J 4 HOH D 41 419 106 HOH HOH . 
J 4 HOH D 42 420 108 HOH HOH . 
J 4 HOH D 43 421 109 HOH HOH . 
J 4 HOH D 44 422 112 HOH HOH . 
J 4 HOH D 45 423 119 HOH HOH . 
J 4 HOH D 46 424 126 HOH HOH . 
J 4 HOH D 47 425 131 HOH HOH . 
J 4 HOH D 48 426 132 HOH HOH . 
J 4 HOH D 49 427 134 HOH HOH . 
J 4 HOH D 50 428 135 HOH HOH . 
J 4 HOH D 51 429 137 HOH HOH . 
J 4 HOH D 52 430 138 HOH HOH . 
J 4 HOH D 53 431 139 HOH HOH . 
J 4 HOH D 54 432 140 HOH HOH . 
J 4 HOH D 55 433 141 HOH HOH . 
J 4 HOH D 56 434 142 HOH HOH . 
J 4 HOH D 57 435 143 HOH HOH . 
J 4 HOH D 58 436 144 HOH HOH . 
J 4 HOH D 59 437 145 HOH HOH . 
J 4 HOH D 60 438 146 HOH HOH . 
J 4 HOH D 61 439 148 HOH HOH . 
J 4 HOH D 62 440 149 HOH HOH . 
J 4 HOH D 63 441 151 HOH HOH . 
J 4 HOH D 64 442 152 HOH HOH . 
J 4 HOH D 65 443 154 HOH HOH . 
J 4 HOH D 66 444 156 HOH HOH . 
J 4 HOH D 67 445 157 HOH HOH . 
J 4 HOH D 68 446 158 HOH HOH . 
J 4 HOH D 69 447 159 HOH HOH . 
J 4 HOH D 70 448 160 HOH HOH . 
J 4 HOH D 71 449 162 HOH HOH . 
J 4 HOH D 72 450 164 HOH HOH . 
J 4 HOH D 73 451 166 HOH HOH . 
J 4 HOH D 74 452 168 HOH HOH . 
J 4 HOH D 75 453 170 HOH HOH . 
J 4 HOH D 76 454 171 HOH HOH . 
J 4 HOH D 77 455 172 HOH HOH . 
J 4 HOH D 78 456 173 HOH HOH . 
J 4 HOH D 79 457 177 HOH HOH . 
J 4 HOH D 80 458 178 HOH HOH . 
J 4 HOH D 81 459 180 HOH HOH . 
J 4 HOH D 82 460 181 HOH HOH . 
J 4 HOH D 83 461 183 HOH HOH . 
K 4 HOH E 1 32 32 HOH HOH . 
K 4 HOH E 2 69 69 HOH HOH . 
K 4 HOH E 3 72 72 HOH HOH . 
K 4 HOH E 4 90 90 HOH HOH . 
K 4 HOH E 5 182 182 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 -6.124 -29.009 16.75 1 57.29 ? C1 GOL 378 A 1 
HETATM 2 O O1 GOL . . . F 3 -6.639 -27.836 17.348 1 47.58 ? O1 GOL 378 A 1 
HETATM 3 C C2 GOL . . . F 3 -5.342 -29.848 17.763 1 59.91 ? C2 GOL 378 A 1 
HETATM 4 O O2 GOL . . . F 3 -5.899 -29.721 19.053 1 52.49 ? O2 GOL 378 A 1 
HETATM 5 C C3 GOL . . . F 3 -3.878 -29.414 17.796 1 54.42 ? C3 GOL 378 A 1 
HETATM 6 O O3 GOL . . . F 3 -3.315 -29.488 16.503 1 45.65 ? O3 GOL 378 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#