data_3UMI # _model_server_result.job_id '_IIemJgieBPHW6O4-z2n2A' _model_server_result.datetime_utc '2024-11-04 20:37:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3umi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":5}' # _entry.id 3UMI # _exptl.entry_id 3UMI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UMI _cell.length_a 39.757 _cell.length_b 39.757 _cell.length_c 126.425 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UMI _symmetry.cell_setting ? _symmetry.Int_Tables_number 78 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C ZN ZN . A ZN 1 1_555 L O HOH . A HOH 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 C ZN ZN . A ZN 1 1_555 A NE2 HIS 89 A HIS 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc3 C ZN ZN . A ZN 1 1_555 A NE2 HIS 139 A HIS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.96 ? metalc ? metalc4 C ZN ZN . A ZN 1 1_555 A NE2 HIS 143 A HIS 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc5 E CD CD . A CD 3 1_555 A OD2 ASP 151 A ASP 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc6 E CD CD . A CD 3 1_555 L O HOH . A HOH 732 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc7 F CD CD . A CD 4 1_555 A NE2 HIS 146 A HIS 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc8 G CD CD . A CD 5 1_555 A NE2 HIS 34 A HIS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc9 G CD CD . A CD 5 1_555 A OE2 GLU 75 A GLU 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc10 G CD CD . A CD 5 1_555 A OE1 GLU 75 A GLU 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? metalc ? metalc11 G CD CD . A CD 5 1_555 L O HOH . A HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc12 H CD CD . A CD 6 1_555 A OE1 GLU 69 A GLU 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc13 H CD CD . A CD 6 1_555 A OE1 GLU 72 A GLU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc14 H CD CD . A CD 6 1_555 B O ACT . A ACT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc15 H CD CD . A CD 6 1_555 B OXT ACT . A ACT 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc16 I CD CD . A CD 7 1_555 A OD1 ASP 195 A ASP 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc17 J CD CD . A CD 8 1_555 A ND1 HIS 66 A HIS 359 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc18 K CD CD . A CD 9 1_555 A OE2 GLU 28 A GLU 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3UMI _atom_sites.fract_transf_matrix[1][1] 0.025153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025153 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00791 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 601 1 ACT ACT . C 3 ZN A 1 1 2 ZN ZN . D 4 CD A 1 2 1 CD CD . E 4 CD A 1 3 3 CD CD . F 4 CD A 1 4 4 CD CD . G 4 CD A 1 5 5 CD CD . H 4 CD A 1 6 6 CD CD . I 4 CD A 1 7 7 CD CD . J 4 CD A 1 8 8 CD CD . K 4 CD A 1 9 9 CD CD . L 5 HOH A 1 701 1 HOH HOH . L 5 HOH A 2 702 2 HOH HOH . L 5 HOH A 3 703 3 HOH HOH . L 5 HOH A 4 704 4 HOH HOH . L 5 HOH A 5 705 5 HOH HOH . L 5 HOH A 6 706 6 HOH HOH . L 5 HOH A 7 707 7 HOH HOH . L 5 HOH A 8 708 8 HOH HOH . L 5 HOH A 9 709 9 HOH HOH . L 5 HOH A 10 710 10 HOH HOH . L 5 HOH A 11 711 11 HOH HOH . L 5 HOH A 12 712 12 HOH HOH . L 5 HOH A 13 713 13 HOH HOH . L 5 HOH A 14 714 14 HOH HOH . L 5 HOH A 15 715 15 HOH HOH . L 5 HOH A 16 716 16 HOH HOH . L 5 HOH A 17 717 17 HOH HOH . L 5 HOH A 18 718 18 HOH HOH . L 5 HOH A 19 719 19 HOH HOH . L 5 HOH A 20 720 20 HOH HOH . L 5 HOH A 21 721 21 HOH HOH . L 5 HOH A 22 722 22 HOH HOH . L 5 HOH A 23 723 23 HOH HOH . L 5 HOH A 24 724 24 HOH HOH . L 5 HOH A 25 725 25 HOH HOH . L 5 HOH A 26 726 26 HOH HOH . L 5 HOH A 27 727 27 HOH HOH . L 5 HOH A 28 728 28 HOH HOH . L 5 HOH A 29 729 29 HOH HOH . L 5 HOH A 30 730 30 HOH HOH . L 5 HOH A 31 731 31 HOH HOH . L 5 HOH A 32 732 32 HOH HOH . L 5 HOH A 33 33 33 HOH HOH . L 5 HOH A 34 734 34 HOH HOH . L 5 HOH A 35 735 35 HOH HOH . L 5 HOH A 36 736 36 HOH HOH . L 5 HOH A 37 737 37 HOH HOH . L 5 HOH A 38 738 38 HOH HOH . L 5 HOH A 39 739 39 HOH HOH . L 5 HOH A 40 740 40 HOH HOH . L 5 HOH A 41 741 41 HOH HOH . L 5 HOH A 42 742 42 HOH HOH . L 5 HOH A 43 743 43 HOH HOH . L 5 HOH A 44 744 44 HOH HOH . L 5 HOH A 45 745 45 HOH HOH . L 5 HOH A 46 746 46 HOH HOH . L 5 HOH A 47 747 47 HOH HOH . L 5 HOH A 48 748 48 HOH HOH . L 5 HOH A 49 749 49 HOH HOH . L 5 HOH A 50 750 50 HOH HOH . L 5 HOH A 51 751 51 HOH HOH . L 5 HOH A 52 752 52 HOH HOH . L 5 HOH A 53 753 53 HOH HOH . L 5 HOH A 54 754 54 HOH HOH . L 5 HOH A 55 755 55 HOH HOH . L 5 HOH A 56 756 56 HOH HOH . L 5 HOH A 57 757 57 HOH HOH . L 5 HOH A 58 758 58 HOH HOH . L 5 HOH A 59 759 59 HOH HOH . L 5 HOH A 60 760 60 HOH HOH . L 5 HOH A 61 761 61 HOH HOH . L 5 HOH A 62 762 62 HOH HOH . L 5 HOH A 63 763 63 HOH HOH . L 5 HOH A 64 764 64 HOH HOH . L 5 HOH A 65 765 65 HOH HOH . L 5 HOH A 66 766 66 HOH HOH . L 5 HOH A 67 767 67 HOH HOH . L 5 HOH A 68 768 68 HOH HOH . L 5 HOH A 69 769 69 HOH HOH . L 5 HOH A 70 770 70 HOH HOH . L 5 HOH A 71 771 71 HOH HOH . L 5 HOH A 72 772 72 HOH HOH . L 5 HOH A 73 773 73 HOH HOH . L 5 HOH A 74 774 74 HOH HOH . L 5 HOH A 75 775 75 HOH HOH . L 5 HOH A 76 776 76 HOH HOH . L 5 HOH A 77 777 77 HOH HOH . L 5 HOH A 78 778 78 HOH HOH . L 5 HOH A 79 79 79 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 4 _atom_site.Cartn_x -74.332 _atom_site.Cartn_y -28.841 _atom_site.Cartn_z -15.875 _atom_site.occupancy 0.67 _atom_site.B_iso_or_equiv 45.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 5 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #