data_3UMW # _model_server_result.job_id '_U2hJrXWdBoBFPouMrX2LA' _model_server_result.datetime_utc '2024-10-17 17:28:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3umw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":400}' # _entry.id 3UMW # _exptl.entry_id 3UMW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.435 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2Z)-2-(1H-indazol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3(2H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UMW _cell.length_a 98.28 _cell.length_b 98.28 _cell.length_c 80.641 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UMW _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H22 N4 O3' _chem_comp.formula_weight 390.435 _chem_comp.id 596 _chem_comp.mon_nstd_flag . _chem_comp.name (2Z)-2-(1H-indazol-3-ylmethylidene)-6-methoxy-7-(piperazin-1-ylmethyl)-1-benzofuran-3(2H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 596 sing 1 n n C1 N6 596 sing 2 n n C2 N3 596 sing 3 n n N3 C4 596 sing 4 n n N3 C7 596 sing 5 n n C4 C5 596 sing 6 n n C5 N6 596 sing 7 n n C7 C8 596 sing 8 n n C8 C9 596 doub 9 n y C8 C13 596 sing 10 n y C9 C10 596 sing 11 n y C9 O16 596 sing 12 n n C10 C11 596 doub 13 n y C10 C18 596 sing 14 n n C11 C12 596 sing 15 n y C12 C13 596 doub 16 n y C13 O14 596 sing 17 n n O14 C15 596 sing 18 n n O16 C17 596 sing 19 n n C17 C18 596 sing 20 n n C17 C20 596 doub 21 z n C18 O19 596 doub 22 n n C20 C21 596 sing 23 n n C21 N22 596 doub 24 n y C21 C25 596 sing 25 n y N22 N23 596 sing 26 n y N23 C24 596 sing 27 n y C24 C25 596 doub 28 n y C24 C29 596 sing 29 n y C25 C26 596 sing 30 n y C26 C27 596 doub 31 n y C27 C28 596 sing 32 n y C28 C29 596 doub 33 n y C1 H1 596 sing 34 n n C1 H1A 596 sing 35 n n C2 H2 596 sing 36 n n C2 H2A 596 sing 37 n n C4 H4 596 sing 38 n n C4 H4A 596 sing 39 n n C5 H5 596 sing 40 n n C5 H5A 596 sing 41 n n N6 HN6 596 sing 42 n n C7 H7 596 sing 43 n n C7 H7A 596 sing 44 n n C11 H11 596 sing 45 n n C12 H12 596 sing 46 n n C15 H15 596 sing 47 n n C15 H15A 596 sing 48 n n C15 H15B 596 sing 49 n n C20 H20 596 sing 50 n n N23 HN23 596 sing 51 n n C26 H26 596 sing 52 n n C27 H27 596 sing 53 n n C28 H28 596 sing 54 n n C29 H29 596 sing 55 n n # _atom_sites.entry_id 3UMW _atom_sites.fract_transf_matrix[1][1] 0.010175 _atom_sites.fract_transf_matrix[1][2] 0.005875 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011749 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 3 SO4 A 1 402 402 SO4 SO4 . D 4 596 A 1 400 400 596 596 . E 5 HOH A 1 1 1 HOH HOH . E 5 HOH A 2 2 2 HOH HOH . E 5 HOH A 3 3 3 HOH HOH . E 5 HOH A 4 4 4 HOH HOH . E 5 HOH A 5 5 5 HOH HOH . E 5 HOH A 6 6 6 HOH HOH . E 5 HOH A 7 7 7 HOH HOH . E 5 HOH A 8 8 8 HOH HOH . E 5 HOH A 9 9 9 HOH HOH . E 5 HOH A 10 10 10 HOH HOH . E 5 HOH A 11 11 11 HOH HOH . E 5 HOH A 12 12 12 HOH HOH . E 5 HOH A 13 13 13 HOH HOH . E 5 HOH A 14 14 14 HOH HOH . E 5 HOH A 15 15 15 HOH HOH . E 5 HOH A 16 16 16 HOH HOH . E 5 HOH A 17 17 17 HOH HOH . E 5 HOH A 18 18 18 HOH HOH . E 5 HOH A 19 19 19 HOH HOH . E 5 HOH A 20 20 20 HOH HOH . E 5 HOH A 21 21 21 HOH HOH . E 5 HOH A 22 22 22 HOH HOH . E 5 HOH A 23 23 23 HOH HOH . E 5 HOH A 24 24 24 HOH HOH . E 5 HOH A 25 25 25 HOH HOH . E 5 HOH A 26 26 26 HOH HOH . E 5 HOH A 27 27 27 HOH HOH . E 5 HOH A 28 326 28 HOH HOH . E 5 HOH A 29 327 29 HOH HOH . E 5 HOH A 30 328 30 HOH HOH . E 5 HOH A 31 329 31 HOH HOH . E 5 HOH A 32 330 32 HOH HOH . E 5 HOH A 33 331 33 HOH HOH . E 5 HOH A 34 332 34 HOH HOH . E 5 HOH A 35 333 35 HOH HOH . E 5 HOH A 36 334 36 HOH HOH . E 5 HOH A 37 335 37 HOH HOH . E 5 HOH A 38 336 38 HOH HOH . E 5 HOH A 39 337 39 HOH HOH . E 5 HOH A 40 338 40 HOH HOH . E 5 HOH A 41 339 41 HOH HOH . E 5 HOH A 42 340 42 HOH HOH . E 5 HOH A 43 341 43 HOH HOH . E 5 HOH A 44 342 44 HOH HOH . E 5 HOH A 45 343 45 HOH HOH . E 5 HOH A 46 344 46 HOH HOH . E 5 HOH A 47 345 47 HOH HOH . E 5 HOH A 48 346 48 HOH HOH . E 5 HOH A 49 347 49 HOH HOH . E 5 HOH A 50 348 50 HOH HOH . E 5 HOH A 51 349 51 HOH HOH . E 5 HOH A 52 350 52 HOH HOH . E 5 HOH A 53 351 53 HOH HOH . E 5 HOH A 54 352 54 HOH HOH . E 5 HOH A 55 353 55 HOH HOH . E 5 HOH A 56 354 56 HOH HOH . E 5 HOH A 57 355 57 HOH HOH . E 5 HOH A 58 356 58 HOH HOH . E 5 HOH A 59 357 59 HOH HOH . E 5 HOH A 60 358 60 HOH HOH . E 5 HOH A 61 359 61 HOH HOH . E 5 HOH A 62 360 62 HOH HOH . E 5 HOH A 63 361 63 HOH HOH . E 5 HOH A 64 362 64 HOH HOH . E 5 HOH A 65 363 65 HOH HOH . E 5 HOH A 66 364 66 HOH HOH . E 5 HOH A 67 365 67 HOH HOH . E 5 HOH A 68 366 68 HOH HOH . E 5 HOH A 69 367 69 HOH HOH . E 5 HOH A 70 368 70 HOH HOH . E 5 HOH A 71 369 71 HOH HOH . E 5 HOH A 72 370 72 HOH HOH . E 5 HOH A 73 371 73 HOH HOH . E 5 HOH A 74 372 74 HOH HOH . E 5 HOH A 75 373 75 HOH HOH . E 5 HOH A 76 374 76 HOH HOH . E 5 HOH A 77 375 77 HOH HOH . E 5 HOH A 78 376 78 HOH HOH . E 5 HOH A 79 377 79 HOH HOH . E 5 HOH A 80 378 80 HOH HOH . E 5 HOH A 81 379 81 HOH HOH . E 5 HOH A 82 380 82 HOH HOH . E 5 HOH A 83 381 83 HOH HOH . E 5 HOH A 84 382 84 HOH HOH . E 5 HOH A 85 383 85 HOH HOH . E 5 HOH A 86 384 86 HOH HOH . E 5 HOH A 87 385 87 HOH HOH . E 5 HOH A 88 386 88 HOH HOH . E 5 HOH A 89 387 89 HOH HOH . E 5 HOH A 90 388 90 HOH HOH . E 5 HOH A 91 389 91 HOH HOH . E 5 HOH A 92 390 92 HOH HOH . E 5 HOH A 93 391 93 HOH HOH . E 5 HOH A 94 392 94 HOH HOH . E 5 HOH A 95 393 95 HOH HOH . E 5 HOH A 96 394 96 HOH HOH . E 5 HOH A 97 395 97 HOH HOH . E 5 HOH A 98 396 98 HOH HOH . E 5 HOH A 99 397 99 HOH HOH . E 5 HOH A 100 398 100 HOH HOH . E 5 HOH A 101 399 101 HOH HOH . E 5 HOH A 102 403 102 HOH HOH . E 5 HOH A 103 404 103 HOH HOH . E 5 HOH A 104 405 104 HOH HOH . E 5 HOH A 105 406 105 HOH HOH . E 5 HOH A 106 407 106 HOH HOH . E 5 HOH A 107 408 107 HOH HOH . E 5 HOH A 108 409 108 HOH HOH . E 5 HOH A 109 410 109 HOH HOH . E 5 HOH A 110 411 110 HOH HOH . E 5 HOH A 111 412 111 HOH HOH . E 5 HOH A 112 413 112 HOH HOH . E 5 HOH A 113 414 113 HOH HOH . E 5 HOH A 114 415 114 HOH HOH . E 5 HOH A 115 416 115 HOH HOH . E 5 HOH A 116 417 116 HOH HOH . E 5 HOH A 117 418 117 HOH HOH . E 5 HOH A 118 419 118 HOH HOH . E 5 HOH A 119 420 119 HOH HOH . E 5 HOH A 120 421 120 HOH HOH . E 5 HOH A 121 422 121 HOH HOH . E 5 HOH A 122 423 122 HOH HOH . E 5 HOH A 123 424 123 HOH HOH . E 5 HOH A 124 425 124 HOH HOH . E 5 HOH A 125 426 125 HOH HOH . E 5 HOH A 126 427 126 HOH HOH . E 5 HOH A 127 428 127 HOH HOH . E 5 HOH A 128 429 128 HOH HOH . E 5 HOH A 129 430 129 HOH HOH . E 5 HOH A 130 431 130 HOH HOH . E 5 HOH A 131 432 131 HOH HOH . E 5 HOH A 132 433 132 HOH HOH . E 5 HOH A 133 434 133 HOH HOH . E 5 HOH A 134 435 134 HOH HOH . E 5 HOH A 135 436 135 HOH HOH . E 5 HOH A 136 437 136 HOH HOH . E 5 HOH A 137 438 137 HOH HOH . E 5 HOH A 138 439 138 HOH HOH . E 5 HOH A 139 440 139 HOH HOH . E 5 HOH A 140 441 140 HOH HOH . E 5 HOH A 141 442 141 HOH HOH . E 5 HOH A 142 443 142 HOH HOH . E 5 HOH A 143 444 143 HOH HOH . E 5 HOH A 144 445 144 HOH HOH . E 5 HOH A 145 446 145 HOH HOH . E 5 HOH A 146 447 146 HOH HOH . E 5 HOH A 147 448 147 HOH HOH . E 5 HOH A 148 449 148 HOH HOH . E 5 HOH A 149 450 149 HOH HOH . E 5 HOH A 150 451 150 HOH HOH . E 5 HOH A 151 452 151 HOH HOH . E 5 HOH A 152 453 152 HOH HOH . E 5 HOH A 153 454 153 HOH HOH . E 5 HOH A 154 455 154 HOH HOH . E 5 HOH A 155 456 155 HOH HOH . E 5 HOH A 156 457 156 HOH HOH . E 5 HOH A 157 458 157 HOH HOH . E 5 HOH A 158 459 158 HOH HOH . E 5 HOH A 159 460 159 HOH HOH . E 5 HOH A 160 461 160 HOH HOH . E 5 HOH A 161 462 161 HOH HOH . E 5 HOH A 162 463 162 HOH HOH . E 5 HOH A 163 464 163 HOH HOH . E 5 HOH A 164 465 164 HOH HOH . E 5 HOH A 165 466 165 HOH HOH . E 5 HOH A 166 467 166 HOH HOH . E 5 HOH A 167 468 167 HOH HOH . E 5 HOH A 168 469 168 HOH HOH . E 5 HOH A 169 470 169 HOH HOH . E 5 HOH A 170 471 170 HOH HOH . E 5 HOH A 171 472 171 HOH HOH . E 5 HOH A 172 473 172 HOH HOH . E 5 HOH A 173 474 173 HOH HOH . E 5 HOH A 174 475 174 HOH HOH . E 5 HOH A 175 476 175 HOH HOH . E 5 HOH A 176 477 176 HOH HOH . E 5 HOH A 177 478 177 HOH HOH . E 5 HOH A 178 479 178 HOH HOH . E 5 HOH A 179 480 179 HOH HOH . E 5 HOH A 180 481 180 HOH HOH . E 5 HOH A 181 482 181 HOH HOH . E 5 HOH A 182 483 182 HOH HOH . E 5 HOH A 183 484 183 HOH HOH . E 5 HOH A 184 485 184 HOH HOH . E 5 HOH A 185 486 185 HOH HOH . E 5 HOH A 186 487 186 HOH HOH . E 5 HOH A 187 488 187 HOH HOH . E 5 HOH A 188 489 188 HOH HOH . E 5 HOH A 189 490 189 HOH HOH . E 5 HOH A 190 491 190 HOH HOH . E 5 HOH A 191 492 191 HOH HOH . E 5 HOH A 192 493 192 HOH HOH . E 5 HOH A 193 494 193 HOH HOH . E 5 HOH A 194 495 194 HOH HOH . E 5 HOH A 195 496 195 HOH HOH . E 5 HOH A 196 497 196 HOH HOH . E 5 HOH A 197 498 197 HOH HOH . E 5 HOH A 198 499 198 HOH HOH . E 5 HOH A 199 500 199 HOH HOH . E 5 HOH A 200 501 200 HOH HOH . E 5 HOH A 201 502 201 HOH HOH . E 5 HOH A 202 503 202 HOH HOH . E 5 HOH A 203 504 203 HOH HOH . E 5 HOH A 204 505 204 HOH HOH . E 5 HOH A 205 506 205 HOH HOH . E 5 HOH A 206 507 206 HOH HOH . E 5 HOH A 207 508 207 HOH HOH . E 5 HOH A 208 509 208 HOH HOH . E 5 HOH A 209 510 209 HOH HOH . E 5 HOH A 210 511 210 HOH HOH . E 5 HOH A 211 512 211 HOH HOH . E 5 HOH A 212 513 212 HOH HOH . E 5 HOH A 213 514 213 HOH HOH . E 5 HOH A 214 515 214 HOH HOH . E 5 HOH A 215 516 215 HOH HOH . E 5 HOH A 216 517 216 HOH HOH . E 5 HOH A 217 518 217 HOH HOH . E 5 HOH A 218 519 218 HOH HOH . E 5 HOH A 219 520 219 HOH HOH . E 5 HOH A 220 521 220 HOH HOH . E 5 HOH A 221 522 221 HOH HOH . E 5 HOH A 222 523 222 HOH HOH . E 5 HOH A 223 524 223 HOH HOH . E 5 HOH A 224 525 224 HOH HOH . E 5 HOH A 225 526 225 HOH HOH . E 5 HOH A 226 527 226 HOH HOH . E 5 HOH A 227 528 227 HOH HOH . E 5 HOH A 228 529 228 HOH HOH . E 5 HOH A 229 530 229 HOH HOH . E 5 HOH A 230 531 230 HOH HOH . E 5 HOH A 231 532 231 HOH HOH . E 5 HOH A 232 533 232 HOH HOH . E 5 HOH A 233 534 233 HOH HOH . E 5 HOH A 234 535 234 HOH HOH . E 5 HOH A 235 536 235 HOH HOH . E 5 HOH A 236 537 236 HOH HOH . E 5 HOH A 237 538 237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 596 . . . D 4 16.862 -37.129 -3.879 1 30.03 ? C1 596 400 A 1 HETATM 2 C C2 596 . . . D 4 17.412 -35.952 -3.051 1 29.41 ? C2 596 400 A 1 HETATM 3 N N3 596 . . . D 4 18.265 -36.421 -1.946 1 25.84 ? N3 596 400 A 1 HETATM 4 C C4 596 . . . D 4 17.519 -37.342 -1.076 1 25.1 ? C4 596 400 A 1 HETATM 5 C C5 596 . . . D 4 17.08 -38.571 -1.867 1 25.81 ? C5 596 400 A 1 HETATM 6 N N6 596 . . . D 4 16.299 -38.178 -3.022 1 27.74 ? N6 596 400 A 1 HETATM 7 C C7 596 . . . D 4 18.853 -35.284 -1.181 1 24.96 ? C7 596 400 A 1 HETATM 8 C C8 596 . . . D 4 17.805 -34.455 -0.426 1 25.49 ? C8 596 400 A 1 HETATM 9 C C9 596 . . . D 4 17.531 -34.696 0.924 1 24.75 ? C9 596 400 A 1 HETATM 10 C C10 596 . . . D 4 16.562 -33.971 1.614 1 23.85 ? C10 596 400 A 1 HETATM 11 C C11 596 . . . D 4 15.839 -32.965 1.015 1 24.45 ? C11 596 400 A 1 HETATM 12 C C12 596 . . . D 4 16.099 -32.719 -0.326 1 25.03 ? C12 596 400 A 1 HETATM 13 C C13 596 . . . D 4 17.065 -33.434 -1.044 1 25.39 ? C13 596 400 A 1 HETATM 14 O O14 596 . . . D 4 17.279 -33.132 -2.37 1 28.67 ? O14 596 400 A 1 HETATM 15 C C15 596 . . . D 4 16.454 -32.214 -3.125 1 29.28 ? C15 596 400 A 1 HETATM 16 O O16 596 . . . D 4 18.165 -35.683 1.72 1 23.91 ? O16 596 400 A 1 HETATM 17 C C17 596 . . . D 4 17.641 -35.616 2.977 1 22.91 ? C17 596 400 A 1 HETATM 18 C C18 596 . . . D 4 16.624 -34.56 2.975 1 24.43 ? C18 596 400 A 1 HETATM 19 O O19 596 . . . D 4 15.932 -34.248 4.022 1 25.19 ? O19 596 400 A 1 HETATM 20 C C20 596 . . . D 4 18.043 -36.471 4.109 1 21.25 ? C20 596 400 A 1 HETATM 21 C C21 596 . . . D 4 19.046 -37.559 4.184 1 20.32 ? C21 596 400 A 1 HETATM 22 N N22 596 . . . D 4 19.309 -38.103 5.385 1 22.02 ? N22 596 400 A 1 HETATM 23 N N23 596 . . . D 4 20.262 -39.099 5.143 1 21.14 ? N23 596 400 A 1 HETATM 24 C C24 596 . . . D 4 20.59 -39.147 3.831 1 21.28 ? C24 596 400 A 1 HETATM 25 C C25 596 . . . D 4 19.862 -38.192 3.139 1 21.12 ? C25 596 400 A 1 HETATM 26 C C26 596 . . . D 4 19.961 -38.02 1.766 1 20.49 ? C26 596 400 A 1 HETATM 27 C C27 596 . . . D 4 20.844 -38.833 1.072 1 21.54 ? C27 596 400 A 1 HETATM 28 C C28 596 . . . D 4 21.594 -39.8 1.752 1 23.76 ? C28 596 400 A 1 HETATM 29 C C29 596 . . . D 4 21.473 -39.962 3.133 1 22.67 ? C29 596 400 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #