data_3UOD # _model_server_result.job_id t8xhD5X8Iv6VlibUWmyZmQ _model_server_result.datetime_utc '2024-11-05 10:35:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uod # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3UOD # _exptl.entry_id 3UOD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UOD _cell.length_a 81.98 _cell.length_b 81.98 _cell.length_c 173.81 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UOD _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 125 n n C1 C2 EDO sing 126 n n C1 H11 EDO sing 127 n n C1 H12 EDO sing 128 n n O1 HO1 EDO sing 129 n n C2 O2 EDO sing 130 n n C2 H21 EDO sing 131 n n C2 H22 EDO sing 132 n n O2 HO2 EDO sing 133 n n # _atom_sites.entry_id 3UOD _atom_sites.fract_transf_matrix[1][1] 0.012198 _atom_sites.fract_transf_matrix[1][2] 0.007043 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005753 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0C3 A 1 1 1 0C3 INH . C 3 EDO A 1 402 1 EDO EDO . D 4 PEG A 1 403 1 PEG PEG . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 5 5 HOH HOH . E 5 HOH A 4 6 6 HOH HOH . E 5 HOH A 5 7 7 HOH HOH . E 5 HOH A 6 8 8 HOH HOH . E 5 HOH A 7 9 9 HOH HOH . E 5 HOH A 8 10 10 HOH HOH . E 5 HOH A 9 12 12 HOH HOH . E 5 HOH A 10 13 13 HOH HOH . E 5 HOH A 11 14 14 HOH HOH . E 5 HOH A 12 15 15 HOH HOH . E 5 HOH A 13 16 16 HOH HOH . E 5 HOH A 14 17 17 HOH HOH . E 5 HOH A 15 18 18 HOH HOH . E 5 HOH A 16 19 19 HOH HOH . E 5 HOH A 17 20 20 HOH HOH . E 5 HOH A 18 21 21 HOH HOH . E 5 HOH A 19 22 22 HOH HOH . E 5 HOH A 20 23 23 HOH HOH . E 5 HOH A 21 24 24 HOH HOH . E 5 HOH A 22 25 25 HOH HOH . E 5 HOH A 23 26 26 HOH HOH . E 5 HOH A 24 27 27 HOH HOH . E 5 HOH A 25 28 28 HOH HOH . E 5 HOH A 26 29 29 HOH HOH . E 5 HOH A 27 30 30 HOH HOH . E 5 HOH A 28 31 31 HOH HOH . E 5 HOH A 29 32 32 HOH HOH . E 5 HOH A 30 33 33 HOH HOH . E 5 HOH A 31 34 34 HOH HOH . E 5 HOH A 32 35 35 HOH HOH . E 5 HOH A 33 36 36 HOH HOH . E 5 HOH A 34 37 37 HOH HOH . E 5 HOH A 35 38 38 HOH HOH . E 5 HOH A 36 39 39 HOH HOH . E 5 HOH A 37 40 40 HOH HOH . E 5 HOH A 38 41 41 HOH HOH . E 5 HOH A 39 42 42 HOH HOH . E 5 HOH A 40 43 43 HOH HOH . E 5 HOH A 41 44 44 HOH HOH . E 5 HOH A 42 45 45 HOH HOH . E 5 HOH A 43 46 46 HOH HOH . E 5 HOH A 44 47 47 HOH HOH . E 5 HOH A 45 404 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 21.075 46.577 18.578 1 55.63 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 20.136 46.316 19.643 1 57.34 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 20.964 48.017 18.051 1 56.94 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 19.635 48.26 17.532 1 58.2 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #