data_3UOF # _model_server_result.job_id HzJgNPaM2X1Sb8NuopA1Eg _model_server_result.datetime_utc '2024-12-04 09:04:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uof # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":203}' # _entry.id 3UOF # _exptl.entry_id 3UOF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UOF _cell.length_a 122.797 _cell.length_b 122.797 _cell.length_c 174.691 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UOF _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 M N N ? 3 X N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 20 A GLU 18 1_555 H FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? metalc ? metalc2 A OE2 GLU 53 A GLU 51 1_555 G FE FE . A FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc3 A OE1 GLU 53 A GLU 51 1_555 H FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc4 A ND1 HIS 56 A HIS 54 1_555 H FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc5 A OE2 GLU 129 A GLU 127 1_555 H FE FE . A FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc6 B OE2 GLU 20 B GLU 18 1_555 K FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc7 B OE1 GLU 53 B GLU 51 1_555 K FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc8 B OE2 GLU 53 B GLU 51 1_555 K FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc9 B OE2 GLU 53 B GLU 51 1_555 L FE FE . B FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.178 ? metalc ? metalc10 B SD MET 54 B MET 52 1_555 J FE HEM . B HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc11 B ND1 HIS 56 B HIS 54 1_555 K FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.779 ? metalc ? metalc12 B OE2 GLU 96 B GLU 94 1_555 L FE FE . B FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc13 B OE2 GLU 129 B GLU 127 1_555 K FE FE . B FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc14 C OE2 GLU 20 C GLU 18 1_555 N FE FE . C FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc15 C OE2 GLU 53 C GLU 51 1_555 N FE FE . C FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc16 C OE1 GLU 53 C GLU 51 1_555 O FE FE . C FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? metalc ? metalc17 C SD MET 54 C MET 52 1_555 P FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc18 C OE2 GLU 129 C GLU 127 1_555 N FE FE . C FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc19 D OE2 GLU 20 D GLU 18 1_555 Q FE FE . D FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.551 ? metalc ? metalc20 D OE1 GLU 20 D GLU 18 1_555 Q FE FE . D FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc21 D OE1 GLU 53 D GLU 51 1_555 Q FE FE . D FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? metalc ? metalc22 D OE2 GLU 53 D GLU 51 1_555 R FE FE . D FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc23 D SD MET 54 D MET 52 1_555 P FE HEM . D HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? metalc ? metalc24 D OE2 GLU 96 D GLU 94 1_555 R FE FE . D FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? metalc ? metalc25 D OE2 GLU 129 D GLU 127 1_555 Q FE FE . D FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc26 D OE1 GLU 129 D GLU 127 1_555 R FE FE . D FE 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc27 E OE2 GLU 20 E GLU 18 1_555 U FE FE . E FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc28 E OE1 GLU 20 E GLU 18 1_555 U FE FE . E FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc29 E OE2 GLU 53 E GLU 51 1_555 T FE FE . E FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc30 E OE1 GLU 53 E GLU 51 1_555 T FE FE . E FE 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc31 E OE2 GLU 129 E GLU 127 1_555 U FE FE . E FE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.73 ? metalc ? metalc32 F OE2 GLU 20 F GLU 18 1_555 W FE FE . F FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc33 F OE1 GLU 53 F GLU 51 1_555 W FE FE . F FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.872 ? metalc ? metalc34 F OE1 GLU 129 F GLU 127 1_555 V FE FE . F FE 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc35 F OE2 GLU 129 F GLU 127 1_555 W FE FE . F FE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 416 n n C C2 TRS sing 417 n n C C3 TRS sing 418 n n C N TRS sing 419 n n C1 O1 TRS sing 420 n n C1 H11 TRS sing 421 n n C1 H12 TRS sing 422 n n C2 O2 TRS sing 423 n n C2 H21 TRS sing 424 n n C2 H22 TRS sing 425 n n C3 O3 TRS sing 426 n n C3 H31 TRS sing 427 n n C3 H32 TRS sing 428 n n N HN1 TRS sing 429 n n N HN2 TRS sing 430 n n N HN3 TRS sing 431 n n O1 HO1 TRS sing 432 n n O2 HO2 TRS sing 433 n n O3 HO3 TRS sing 434 n n # _atom_sites.entry_id 3UOF _atom_sites.fract_transf_matrix[1][1] 0.008144 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008144 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005724 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FE A 1 201 11 FE FE . H 2 FE A 1 202 1 FE FE . I 3 TRS A 1 203 270 TRS TRS . J 4 HEM B 1 301 301 HEM HEM . K 2 FE B 1 302 2 FE FE . L 2 FE B 1 303 3 FE FE . M 3 TRS B 1 304 270 TRS TRS . N 2 FE C 1 201 4 FE FE . O 2 FE C 1 202 5 FE FE . P 4 HEM D 1 201 200 HEM HEM . Q 2 FE D 1 202 7 FE FE . R 2 FE D 1 203 12 FE FE . S 4 HEM E 1 301 301 HEM HEM . T 2 FE E 1 302 8 FE FE . U 2 FE E 1 303 9 FE FE . V 2 FE F 1 201 10 FE FE . W 2 FE F 1 202 6 FE FE . X 3 TRS F 1 203 270 TRS TRS . Y 5 HOH A 1 301 6 HOH HOH . Y 5 HOH A 2 302 12 HOH HOH . Y 5 HOH A 3 303 14 HOH HOH . Y 5 HOH A 4 304 16 HOH HOH . Y 5 HOH A 5 305 19 HOH HOH . Y 5 HOH A 6 306 26 HOH HOH . Y 5 HOH A 7 307 29 HOH HOH . Y 5 HOH A 8 309 39 HOH HOH . Y 5 HOH A 9 310 57 HOH HOH . Y 5 HOH A 10 311 58 HOH HOH . Y 5 HOH A 11 312 83 HOH HOH . Y 5 HOH A 12 313 84 HOH HOH . Y 5 HOH A 13 314 88 HOH HOH . Y 5 HOH A 14 315 90 HOH HOH . Z 5 HOH B 1 401 3 HOH HOH . Z 5 HOH B 2 402 21 HOH HOH . Z 5 HOH B 3 403 22 HOH HOH . Z 5 HOH B 4 404 24 HOH HOH . Z 5 HOH B 5 405 30 HOH HOH . Z 5 HOH B 6 406 32 HOH HOH . Z 5 HOH B 7 407 43 HOH HOH . Z 5 HOH B 8 408 45 HOH HOH . Z 5 HOH B 9 409 49 HOH HOH . Z 5 HOH B 10 410 50 HOH HOH . Z 5 HOH B 11 411 52 HOH HOH . Z 5 HOH B 12 412 53 HOH HOH . Z 5 HOH B 13 413 54 HOH HOH . Z 5 HOH B 14 414 55 HOH HOH . Z 5 HOH B 15 415 56 HOH HOH . Z 5 HOH B 16 416 59 HOH HOH . Z 5 HOH B 17 417 60 HOH HOH . Z 5 HOH B 18 418 62 HOH HOH . Z 5 HOH B 19 419 64 HOH HOH . Z 5 HOH B 20 420 81 HOH HOH . Z 5 HOH B 21 421 82 HOH HOH . Z 5 HOH B 22 422 85 HOH HOH . Z 5 HOH B 23 423 89 HOH HOH . Z 5 HOH B 24 424 91 HOH HOH . Z 5 HOH B 25 425 92 HOH HOH . Z 5 HOH B 26 426 93 HOH HOH . AA 5 HOH C 1 301 1 HOH HOH . AA 5 HOH C 2 302 2 HOH HOH . AA 5 HOH C 3 303 4 HOH HOH . AA 5 HOH C 4 304 9 HOH HOH . AA 5 HOH C 5 305 11 HOH HOH . AA 5 HOH C 6 306 20 HOH HOH . AA 5 HOH C 7 307 34 HOH HOH . AA 5 HOH C 8 308 37 HOH HOH . AA 5 HOH C 9 309 38 HOH HOH . AA 5 HOH C 10 312 63 HOH HOH . AA 5 HOH C 11 313 79 HOH HOH . BA 5 HOH D 1 301 10 HOH HOH . BA 5 HOH D 2 302 27 HOH HOH . BA 5 HOH D 3 303 28 HOH HOH . BA 5 HOH D 4 304 33 HOH HOH . BA 5 HOH D 5 305 35 HOH HOH . BA 5 HOH D 6 306 42 HOH HOH . BA 5 HOH D 7 307 51 HOH HOH . BA 5 HOH D 8 308 61 HOH HOH . BA 5 HOH D 9 309 65 HOH HOH . BA 5 HOH D 10 310 66 HOH HOH . BA 5 HOH D 11 311 67 HOH HOH . BA 5 HOH D 12 312 68 HOH HOH . BA 5 HOH D 13 313 69 HOH HOH . BA 5 HOH D 14 314 70 HOH HOH . BA 5 HOH D 15 315 71 HOH HOH . BA 5 HOH D 16 316 72 HOH HOH . BA 5 HOH D 17 317 73 HOH HOH . BA 5 HOH D 18 318 74 HOH HOH . BA 5 HOH D 19 319 75 HOH HOH . BA 5 HOH D 20 320 76 HOH HOH . BA 5 HOH D 21 321 77 HOH HOH . BA 5 HOH D 22 322 78 HOH HOH . BA 5 HOH D 23 323 80 HOH HOH . CA 5 HOH E 1 401 41 HOH HOH . CA 5 HOH E 2 402 8 HOH HOH . CA 5 HOH E 3 403 23 HOH HOH . CA 5 HOH E 4 404 36 HOH HOH . CA 5 HOH E 5 405 47 HOH HOH . DA 5 HOH F 1 301 5 HOH HOH . DA 5 HOH F 2 302 7 HOH HOH . DA 5 HOH F 3 303 13 HOH HOH . DA 5 HOH F 4 304 17 HOH HOH . DA 5 HOH F 5 305 18 HOH HOH . DA 5 HOH F 6 306 25 HOH HOH . DA 5 HOH F 7 307 40 HOH HOH . DA 5 HOH F 8 308 46 HOH HOH . DA 5 HOH F 9 309 86 HOH HOH . DA 5 HOH F 10 310 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . X 3 -7.233 -35.487 27.546 0.5 50.59 ? C TRS 203 F 1 HETATM 2 C C1 TRS . . . X 3 -8.483 -35.786 26.71 0.5 41.17 ? C1 TRS 203 F 1 HETATM 3 C C2 TRS . . . X 3 -7.548 -35.694 29.041 0.5 40.65 ? C2 TRS 203 F 1 HETATM 4 C C3 TRS . . . X 3 -6.769 -34.053 27.212 0.5 54.29 ? C3 TRS 203 F 1 HETATM 5 N N TRS . . . X 3 -6.193 -36.46 27.179 0.5 43.8 ? N TRS 203 F 1 HETATM 6 O O1 TRS . . . X 3 -8.254 -36.752 25.701 0.5 32.15 ? O1 TRS 203 F 1 HETATM 7 O O2 TRS . . . X 3 -7.524 -34.498 29.798 0.5 30.9 ? O2 TRS 203 F 1 HETATM 8 O O3 TRS . . . X 3 -5.426 -33.756 27.568 0.5 41.48 ? O3 TRS 203 F 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 8 #