data_3UP1 # _model_server_result.job_id gZhpjp66V_vGgBPddb0QDg _model_server_result.datetime_utc '2024-11-22 11:03:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3up1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":306}' # _entry.id 3UP1 # _exptl.entry_id 3UP1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UP1 _cell.length_a 81.424 _cell.length_b 101.259 _cell.length_c 151.994 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UP1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 K N N ? 4 L N N ? 4 M N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG F 901 NAG 2 n C NAG 2 C 2 NAG F 903 NAG 2 n D NAG 1 D 1 NAG G 904 NAG 2 n D NAG 2 D 2 NAG G 906 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 22 1_555 A SG CYS 41 A CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf2 A SG CYS 58 A CYS 54 1_555 A SG CYS 66 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf3 A SG CYS 92 A CYS 88 1_555 A SG CYS 102 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf4 B SG CYS 26 B CYS 22 1_555 B SG CYS 41 B CYS 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf5 B SG CYS 58 B CYS 54 1_555 B SG CYS 66 B CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf6 B SG CYS 92 B CYS 88 1_555 B SG CYS 102 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 B OG SER 137 B SER 133 1_555 J C1 NGA . B NGA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale3 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 386 n n S O2 SO4 doub 387 n n S O3 SO4 sing 388 n n S O4 SO4 sing 389 n n # _atom_sites.entry_id 3UP1 _atom_sites.fract_transf_matrix[1][1] 0.012281 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006579 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 FUC A 1 903 902 FUC FUC . F 4 SO4 A 1 904 3 SO4 SO4 . G 4 SO4 A 1 905 4 SO4 SO4 . H 5 GOL A 1 906 5 GOL GOL . I 3 FUC B 1 303 905 FUC FUC . J 6 NGA B 1 304 907 NGA NGA . K 4 SO4 B 1 305 1 SO4 SO4 . L 4 SO4 B 1 306 2 SO4 SO4 . M 4 SO4 B 1 307 5 SO4 SO4 . N 5 GOL B 1 308 1 GOL GOL . O 5 GOL B 1 309 2 GOL GOL . P 5 GOL B 1 310 3 GOL GOL . Q 7 HOH A 1 1001 1 HOH HOH . Q 7 HOH A 2 1002 2 HOH HOH . Q 7 HOH A 3 1003 3 HOH HOH . Q 7 HOH A 4 1004 4 HOH HOH . Q 7 HOH A 5 1005 5 HOH HOH . Q 7 HOH A 6 1006 6 HOH HOH . Q 7 HOH A 7 1007 7 HOH HOH . Q 7 HOH A 8 1008 10 HOH HOH . Q 7 HOH A 9 1009 11 HOH HOH . Q 7 HOH A 10 1010 12 HOH HOH . Q 7 HOH A 11 1011 14 HOH HOH . Q 7 HOH A 12 1012 15 HOH HOH . Q 7 HOH A 13 1013 19 HOH HOH . Q 7 HOH A 14 1014 21 HOH HOH . Q 7 HOH A 15 1015 22 HOH HOH . Q 7 HOH A 16 1016 23 HOH HOH . Q 7 HOH A 17 1017 25 HOH HOH . Q 7 HOH A 18 1018 26 HOH HOH . Q 7 HOH A 19 1019 27 HOH HOH . Q 7 HOH A 20 1020 29 HOH HOH . Q 7 HOH A 21 1021 33 HOH HOH . Q 7 HOH A 22 1022 36 HOH HOH . Q 7 HOH A 23 1023 38 HOH HOH . Q 7 HOH A 24 1024 39 HOH HOH . Q 7 HOH A 25 1025 40 HOH HOH . Q 7 HOH A 26 1026 41 HOH HOH . Q 7 HOH A 27 1027 42 HOH HOH . Q 7 HOH A 28 1028 43 HOH HOH . Q 7 HOH A 29 1029 44 HOH HOH . Q 7 HOH A 30 1030 45 HOH HOH . Q 7 HOH A 31 1031 46 HOH HOH . Q 7 HOH A 32 1032 48 HOH HOH . Q 7 HOH A 33 1033 49 HOH HOH . Q 7 HOH A 34 1034 50 HOH HOH . Q 7 HOH A 35 1035 51 HOH HOH . Q 7 HOH A 36 1036 52 HOH HOH . Q 7 HOH A 37 1037 56 HOH HOH . Q 7 HOH A 38 1038 58 HOH HOH . Q 7 HOH A 39 1039 59 HOH HOH . Q 7 HOH A 40 1040 60 HOH HOH . Q 7 HOH A 41 1041 64 HOH HOH . Q 7 HOH A 42 1042 67 HOH HOH . Q 7 HOH A 43 1043 68 HOH HOH . Q 7 HOH A 44 1044 71 HOH HOH . Q 7 HOH A 45 1045 73 HOH HOH . Q 7 HOH A 46 1046 74 HOH HOH . Q 7 HOH A 47 1047 81 HOH HOH . Q 7 HOH A 48 1048 88 HOH HOH . Q 7 HOH A 49 1049 91 HOH HOH . Q 7 HOH A 50 1050 92 HOH HOH . Q 7 HOH A 51 1051 93 HOH HOH . Q 7 HOH A 52 1052 95 HOH HOH . Q 7 HOH A 53 1053 97 HOH HOH . Q 7 HOH A 54 1054 100 HOH HOH . Q 7 HOH A 55 1055 101 HOH HOH . Q 7 HOH A 56 1056 102 HOH HOH . Q 7 HOH A 57 1057 103 HOH HOH . Q 7 HOH A 58 1058 104 HOH HOH . Q 7 HOH A 59 1059 107 HOH HOH . Q 7 HOH A 60 1060 109 HOH HOH . Q 7 HOH A 61 1061 110 HOH HOH . Q 7 HOH A 62 1062 111 HOH HOH . Q 7 HOH A 63 1063 112 HOH HOH . Q 7 HOH A 64 1064 113 HOH HOH . Q 7 HOH A 65 1065 118 HOH HOH . Q 7 HOH A 66 1066 121 HOH HOH . Q 7 HOH A 67 1067 122 HOH HOH . Q 7 HOH A 68 1068 123 HOH HOH . Q 7 HOH A 69 1069 124 HOH HOH . Q 7 HOH A 70 1070 125 HOH HOH . Q 7 HOH A 71 1071 126 HOH HOH . Q 7 HOH A 72 1072 131 HOH HOH . Q 7 HOH A 73 1073 132 HOH HOH . R 7 HOH B 1 401 8 HOH HOH . R 7 HOH B 2 402 9 HOH HOH . R 7 HOH B 3 403 13 HOH HOH . R 7 HOH B 4 404 16 HOH HOH . R 7 HOH B 5 405 17 HOH HOH . R 7 HOH B 6 406 18 HOH HOH . R 7 HOH B 7 407 20 HOH HOH . R 7 HOH B 8 408 24 HOH HOH . R 7 HOH B 9 409 28 HOH HOH . R 7 HOH B 10 410 30 HOH HOH . R 7 HOH B 11 411 31 HOH HOH . R 7 HOH B 12 412 32 HOH HOH . R 7 HOH B 13 413 34 HOH HOH . R 7 HOH B 14 414 35 HOH HOH . R 7 HOH B 15 415 37 HOH HOH . R 7 HOH B 16 416 47 HOH HOH . R 7 HOH B 17 417 53 HOH HOH . R 7 HOH B 18 418 54 HOH HOH . R 7 HOH B 19 419 55 HOH HOH . R 7 HOH B 20 420 57 HOH HOH . R 7 HOH B 21 421 61 HOH HOH . R 7 HOH B 22 422 62 HOH HOH . R 7 HOH B 23 423 63 HOH HOH . R 7 HOH B 24 424 65 HOH HOH . R 7 HOH B 25 425 66 HOH HOH . R 7 HOH B 26 426 69 HOH HOH . R 7 HOH B 27 427 70 HOH HOH . R 7 HOH B 28 428 72 HOH HOH . R 7 HOH B 29 429 75 HOH HOH . R 7 HOH B 30 430 76 HOH HOH . R 7 HOH B 31 431 77 HOH HOH . R 7 HOH B 32 432 78 HOH HOH . R 7 HOH B 33 433 79 HOH HOH . R 7 HOH B 34 434 80 HOH HOH . R 7 HOH B 35 435 82 HOH HOH . R 7 HOH B 36 436 83 HOH HOH . R 7 HOH B 37 437 84 HOH HOH . R 7 HOH B 38 438 85 HOH HOH . R 7 HOH B 39 439 86 HOH HOH . R 7 HOH B 40 440 87 HOH HOH . R 7 HOH B 41 441 89 HOH HOH . R 7 HOH B 42 442 90 HOH HOH . R 7 HOH B 43 443 94 HOH HOH . R 7 HOH B 44 444 96 HOH HOH . R 7 HOH B 45 445 98 HOH HOH . R 7 HOH B 46 446 99 HOH HOH . R 7 HOH B 47 447 105 HOH HOH . R 7 HOH B 48 448 106 HOH HOH . R 7 HOH B 49 449 108 HOH HOH . R 7 HOH B 50 450 114 HOH HOH . R 7 HOH B 51 451 115 HOH HOH . R 7 HOH B 52 452 116 HOH HOH . R 7 HOH B 53 453 117 HOH HOH . R 7 HOH B 54 454 119 HOH HOH . R 7 HOH B 55 455 120 HOH HOH . R 7 HOH B 56 456 127 HOH HOH . R 7 HOH B 57 457 128 HOH HOH . R 7 HOH B 58 458 129 HOH HOH . R 7 HOH B 59 459 130 HOH HOH . R 7 HOH B 60 460 133 HOH HOH . R 7 HOH B 61 461 134 HOH HOH . R 7 HOH B 62 462 135 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 4 70.616 44.291 46.79 1 100.91 ? S SO4 306 B 1 HETATM 2 O O1 SO4 . . . L 4 71.162 43.009 46.364 1 93.29 ? O1 SO4 306 B 1 HETATM 3 O O2 SO4 . . . L 4 69.372 44.575 46.077 1 98.27 ? O2 SO4 306 B 1 HETATM 4 O O3 SO4 . . . L 4 70.359 44.247 48.229 1 104.92 ? O3 SO4 306 B 1 HETATM 5 O O4 SO4 . . . L 4 71.591 45.337 46.495 1 102.8 ? O4 SO4 306 B 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 627 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #