data_3UP2 # _model_server_result.job_id XdiV6bfKa_6xEvOTSC113A _model_server_result.datetime_utc '2024-11-22 07:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3up2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3UP2 # _exptl.entry_id 3UP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.316 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[(4-{[2-(trifluoromethoxy)phenyl]amino}pyrimidin-2-yl)amino]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UP2 _cell.length_a 82.44 _cell.length_b 82.44 _cell.length_c 173.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H13 F3 N4 O3' _chem_comp.formula_weight 390.316 _chem_comp.id 0C8 _chem_comp.mon_nstd_flag . _chem_comp.name '4-[(4-{[2-(trifluoromethoxy)phenyl]amino}pyrimidin-2-yl)amino]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O23 C22 0C8 doub 1 n n O24 C22 0C8 sing 2 n n C22 C19 0C8 sing 3 n n C12 C11 0C8 doub 4 n y C12 C13 0C8 sing 5 n y C19 C20 0C8 doub 6 n y C19 C18 0C8 sing 7 n y C11 C10 0C8 sing 8 n y C20 C21 0C8 sing 9 n y C13 C14 0C8 doub 10 n y C18 C17 0C8 doub 11 n y C10 C09 0C8 doub 12 n y C21 C16 0C8 doub 13 n y C14 C09 0C8 sing 14 n y C14 O25 0C8 sing 15 n n F27 C15 0C8 sing 16 n n C09 N03 0C8 sing 17 n n C17 C16 0C8 sing 18 n y O25 C15 0C8 sing 19 n n C16 N04 0C8 sing 20 n n C15 F26 0C8 sing 21 n n C15 F28 0C8 sing 22 n n N03 C07 0C8 sing 23 n n N02 C07 0C8 doub 24 n y N02 C06 0C8 sing 25 n y N04 C06 0C8 sing 26 n n C07 C08 0C8 sing 27 n y C06 N01 0C8 doub 28 n y C08 C05 0C8 doub 29 n y N01 C05 0C8 sing 30 n y N03 H1 0C8 sing 31 n n N04 H2 0C8 sing 32 n n C05 H3 0C8 sing 33 n n C08 H4 0C8 sing 34 n n C10 H5 0C8 sing 35 n n C11 H6 0C8 sing 36 n n C12 H7 0C8 sing 37 n n C13 H8 0C8 sing 38 n n C17 H9 0C8 sing 39 n n C18 H10 0C8 sing 40 n n C20 H11 0C8 sing 41 n n C21 H12 0C8 sing 42 n n O24 H13 0C8 sing 43 n n # _atom_sites.entry_id 3UP2 _atom_sites.fract_transf_matrix[1][1] 0.01213 _atom_sites.fract_transf_matrix[1][2] 0.007003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0C8 A 1 1 1 0C8 INH . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 2 2 EDO EDO . E 4 HOH A 1 3 3 HOH HOH . E 4 HOH A 2 4 4 HOH HOH . E 4 HOH A 3 5 5 HOH HOH . E 4 HOH A 4 6 6 HOH HOH . E 4 HOH A 5 7 7 HOH HOH . E 4 HOH A 6 8 8 HOH HOH . E 4 HOH A 7 9 9 HOH HOH . E 4 HOH A 8 10 10 HOH HOH . E 4 HOH A 9 11 11 HOH HOH . E 4 HOH A 10 12 12 HOH HOH . E 4 HOH A 11 13 13 HOH HOH . E 4 HOH A 12 14 14 HOH HOH . E 4 HOH A 13 15 15 HOH HOH . E 4 HOH A 14 16 16 HOH HOH . E 4 HOH A 15 17 17 HOH HOH . E 4 HOH A 16 18 18 HOH HOH . E 4 HOH A 17 19 19 HOH HOH . E 4 HOH A 18 20 20 HOH HOH . E 4 HOH A 19 21 21 HOH HOH . E 4 HOH A 20 22 22 HOH HOH . E 4 HOH A 21 23 23 HOH HOH . E 4 HOH A 22 24 24 HOH HOH . E 4 HOH A 23 25 25 HOH HOH . E 4 HOH A 24 26 26 HOH HOH . E 4 HOH A 25 27 27 HOH HOH . E 4 HOH A 26 28 28 HOH HOH . E 4 HOH A 27 29 29 HOH HOH . E 4 HOH A 28 30 30 HOH HOH . E 4 HOH A 29 31 31 HOH HOH . E 4 HOH A 30 32 32 HOH HOH . E 4 HOH A 31 33 33 HOH HOH . E 4 HOH A 32 34 34 HOH HOH . E 4 HOH A 33 35 35 HOH HOH . E 4 HOH A 34 36 36 HOH HOH . E 4 HOH A 35 37 37 HOH HOH . E 4 HOH A 36 38 38 HOH HOH . E 4 HOH A 37 39 39 HOH HOH . E 4 HOH A 38 40 40 HOH HOH . E 4 HOH A 39 41 41 HOH HOH . E 4 HOH A 40 42 42 HOH HOH . E 4 HOH A 41 43 43 HOH HOH . E 4 HOH A 42 44 44 HOH HOH . E 4 HOH A 43 45 45 HOH HOH . E 4 HOH A 44 46 46 HOH HOH . E 4 HOH A 45 47 47 HOH HOH . E 4 HOH A 46 48 48 HOH HOH . E 4 HOH A 47 49 49 HOH HOH . E 4 HOH A 48 50 50 HOH HOH . E 4 HOH A 49 51 51 HOH HOH . E 4 HOH A 50 52 52 HOH HOH . E 4 HOH A 51 53 53 HOH HOH . E 4 HOH A 52 54 54 HOH HOH . E 4 HOH A 53 55 55 HOH HOH . E 4 HOH A 54 56 56 HOH HOH . E 4 HOH A 55 57 57 HOH HOH . E 4 HOH A 56 58 58 HOH HOH . E 4 HOH A 57 59 59 HOH HOH . E 4 HOH A 58 60 60 HOH HOH . E 4 HOH A 59 61 61 HOH HOH . E 4 HOH A 60 62 62 HOH HOH . E 4 HOH A 61 63 63 HOH HOH . E 4 HOH A 62 64 64 HOH HOH . E 4 HOH A 63 65 65 HOH HOH . E 4 HOH A 64 66 66 HOH HOH . E 4 HOH A 65 67 67 HOH HOH . E 4 HOH A 66 68 68 HOH HOH . E 4 HOH A 67 69 69 HOH HOH . E 4 HOH A 68 70 70 HOH HOH . E 4 HOH A 69 71 71 HOH HOH . E 4 HOH A 70 72 72 HOH HOH . E 4 HOH A 71 73 73 HOH HOH . E 4 HOH A 72 74 74 HOH HOH . E 4 HOH A 73 75 75 HOH HOH . E 4 HOH A 74 76 76 HOH HOH . E 4 HOH A 75 77 77 HOH HOH . E 4 HOH A 76 78 78 HOH HOH . E 4 HOH A 77 79 79 HOH HOH . E 4 HOH A 78 80 80 HOH HOH . E 4 HOH A 79 81 81 HOH HOH . E 4 HOH A 80 82 82 HOH HOH . E 4 HOH A 81 83 83 HOH HOH . E 4 HOH A 82 84 84 HOH HOH . E 4 HOH A 83 85 85 HOH HOH . E 4 HOH A 84 86 86 HOH HOH . E 4 HOH A 85 87 87 HOH HOH . E 4 HOH A 86 88 88 HOH HOH . E 4 HOH A 87 89 89 HOH HOH . E 4 HOH A 88 90 90 HOH HOH . E 4 HOH A 89 91 91 HOH HOH . E 4 HOH A 90 92 92 HOH HOH . E 4 HOH A 91 93 93 HOH HOH . E 4 HOH A 92 94 94 HOH HOH . E 4 HOH A 93 95 95 HOH HOH . E 4 HOH A 94 96 96 HOH HOH . E 4 HOH A 95 97 97 HOH HOH . E 4 HOH A 96 98 98 HOH HOH . E 4 HOH A 97 403 1 HOH HOH . E 4 HOH A 98 404 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N01 0C8 . . . B 2 3.847 31.808 9.156 1 31.8 ? N01 0C8 1 A 1 HETATM 2 N N02 0C8 . . . B 2 4.502 30.952 7.058 1 34.79 ? N02 0C8 1 A 1 HETATM 3 N N03 0C8 . . . B 2 5.704 28.843 6.871 1 38.02 ? N03 0C8 1 A 1 HETATM 4 N N04 0C8 . . . B 2 3.3 33.048 7.223 1 33.01 ? N04 0C8 1 A 1 HETATM 5 C C05 0C8 . . . B 2 4.405 30.76 9.8 1 32.84 ? C05 0C8 1 A 1 HETATM 6 C C06 0C8 . . . B 2 3.897 31.89 7.813 1 32.37 ? C06 0C8 1 A 1 HETATM 7 C C07 0C8 . . . B 2 5.073 29.873 7.658 1 38.11 ? C07 0C8 1 A 1 HETATM 8 C C08 0C8 . . . B 2 5.029 29.755 9.054 1 34.84 ? C08 0C8 1 A 1 HETATM 9 C C09 0C8 . . . B 2 5.935 29.005 5.46 1 40.05 ? C09 0C8 1 A 1 HETATM 10 C C10 0C8 . . . B 2 4.894 29.362 4.608 1 37.96 ? C10 0C8 1 A 1 HETATM 11 C C11 0C8 . . . B 2 5.118 29.519 3.246 1 43.84 ? C11 0C8 1 A 1 HETATM 12 C C12 0C8 . . . B 2 6.387 29.306 2.728 1 45.05 ? C12 0C8 1 A 1 HETATM 13 C C13 0C8 . . . B 2 7.425 28.934 3.574 1 47.45 ? C13 0C8 1 A 1 HETATM 14 C C14 0C8 . . . B 2 7.209 28.792 4.945 1 46.57 ? C14 0C8 1 A 1 HETATM 15 C C15 0C8 . . . B 2 9.331 29.199 6.08 1 47.2 ? C15 0C8 1 A 1 HETATM 16 C C16 0C8 . . . B 2 2.939 33.233 5.844 1 29.71 ? C16 0C8 1 A 1 HETATM 17 C C17 0C8 . . . B 2 1.86 34.066 5.569 1 32.78 ? C17 0C8 1 A 1 HETATM 18 C C18 0C8 . . . B 2 1.477 34.325 4.263 1 30.53 ? C18 0C8 1 A 1 HETATM 19 C C19 0C8 . . . B 2 2.184 33.728 3.217 1 33.84 ? C19 0C8 1 A 1 HETATM 20 C C20 0C8 . . . B 2 3.262 32.882 3.468 1 31.94 ? C20 0C8 1 A 1 HETATM 21 C C21 0C8 . . . B 2 3.647 32.657 4.794 1 33.35 ? C21 0C8 1 A 1 HETATM 22 C C22 0C8 . . . B 2 1.723 34.008 1.833 1 36.95 ? C22 0C8 1 A 1 HETATM 23 O O23 0C8 . . . B 2 2.55 34.033 0.868 1 37.88 ? O23 0C8 1 A 1 HETATM 24 O O24 0C8 . . . B 2 0.482 34.234 1.672 1 36.84 ? O24 0C8 1 A 1 HETATM 25 O O25 0C8 . . . B 2 8.248 28.395 5.779 1 49.1 ? O25 0C8 1 A 1 HETATM 26 F F26 0C8 . . . B 2 8.95 30.461 6.333 1 44.31 ? F26 0C8 1 A 1 HETATM 27 F F27 0C8 . . . B 2 10.149 29.193 5.033 1 47.56 ? F27 0C8 1 A 1 HETATM 28 F F28 0C8 . . . B 2 9.979 28.674 7.129 1 46.1 ? F28 0C8 1 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 28 #