data_3UP2 # _model_server_result.job_id 6fr3rhlTkzTAaQoAMjQZJg _model_server_result.datetime_utc '2024-11-22 07:18:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3up2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 3UP2 # _exptl.entry_id 3UP2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3UP2 _cell.length_a 82.44 _cell.length_b 82.44 _cell.length_c 173.14 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UP2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 126 n n C1 C2 EDO sing 127 n n C1 H11 EDO sing 128 n n C1 H12 EDO sing 129 n n O1 HO1 EDO sing 130 n n C2 O2 EDO sing 131 n n C2 H21 EDO sing 132 n n C2 H22 EDO sing 133 n n O2 HO2 EDO sing 134 n n # _atom_sites.entry_id 3UP2 _atom_sites.fract_transf_matrix[1][1] 0.01213 _atom_sites.fract_transf_matrix[1][2] 0.007003 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005776 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 0C8 A 1 1 1 0C8 INH . C 3 EDO A 1 402 1 EDO EDO . D 3 EDO A 1 2 2 EDO EDO . E 4 HOH A 1 3 3 HOH HOH . E 4 HOH A 2 4 4 HOH HOH . E 4 HOH A 3 5 5 HOH HOH . E 4 HOH A 4 6 6 HOH HOH . E 4 HOH A 5 7 7 HOH HOH . E 4 HOH A 6 8 8 HOH HOH . E 4 HOH A 7 9 9 HOH HOH . E 4 HOH A 8 10 10 HOH HOH . E 4 HOH A 9 11 11 HOH HOH . E 4 HOH A 10 12 12 HOH HOH . E 4 HOH A 11 13 13 HOH HOH . E 4 HOH A 12 14 14 HOH HOH . E 4 HOH A 13 15 15 HOH HOH . E 4 HOH A 14 16 16 HOH HOH . E 4 HOH A 15 17 17 HOH HOH . E 4 HOH A 16 18 18 HOH HOH . E 4 HOH A 17 19 19 HOH HOH . E 4 HOH A 18 20 20 HOH HOH . E 4 HOH A 19 21 21 HOH HOH . E 4 HOH A 20 22 22 HOH HOH . E 4 HOH A 21 23 23 HOH HOH . E 4 HOH A 22 24 24 HOH HOH . E 4 HOH A 23 25 25 HOH HOH . E 4 HOH A 24 26 26 HOH HOH . E 4 HOH A 25 27 27 HOH HOH . E 4 HOH A 26 28 28 HOH HOH . E 4 HOH A 27 29 29 HOH HOH . E 4 HOH A 28 30 30 HOH HOH . E 4 HOH A 29 31 31 HOH HOH . E 4 HOH A 30 32 32 HOH HOH . E 4 HOH A 31 33 33 HOH HOH . E 4 HOH A 32 34 34 HOH HOH . E 4 HOH A 33 35 35 HOH HOH . E 4 HOH A 34 36 36 HOH HOH . E 4 HOH A 35 37 37 HOH HOH . E 4 HOH A 36 38 38 HOH HOH . E 4 HOH A 37 39 39 HOH HOH . E 4 HOH A 38 40 40 HOH HOH . E 4 HOH A 39 41 41 HOH HOH . E 4 HOH A 40 42 42 HOH HOH . E 4 HOH A 41 43 43 HOH HOH . E 4 HOH A 42 44 44 HOH HOH . E 4 HOH A 43 45 45 HOH HOH . E 4 HOH A 44 46 46 HOH HOH . E 4 HOH A 45 47 47 HOH HOH . E 4 HOH A 46 48 48 HOH HOH . E 4 HOH A 47 49 49 HOH HOH . E 4 HOH A 48 50 50 HOH HOH . E 4 HOH A 49 51 51 HOH HOH . E 4 HOH A 50 52 52 HOH HOH . E 4 HOH A 51 53 53 HOH HOH . E 4 HOH A 52 54 54 HOH HOH . E 4 HOH A 53 55 55 HOH HOH . E 4 HOH A 54 56 56 HOH HOH . E 4 HOH A 55 57 57 HOH HOH . E 4 HOH A 56 58 58 HOH HOH . E 4 HOH A 57 59 59 HOH HOH . E 4 HOH A 58 60 60 HOH HOH . E 4 HOH A 59 61 61 HOH HOH . E 4 HOH A 60 62 62 HOH HOH . E 4 HOH A 61 63 63 HOH HOH . E 4 HOH A 62 64 64 HOH HOH . E 4 HOH A 63 65 65 HOH HOH . E 4 HOH A 64 66 66 HOH HOH . E 4 HOH A 65 67 67 HOH HOH . E 4 HOH A 66 68 68 HOH HOH . E 4 HOH A 67 69 69 HOH HOH . E 4 HOH A 68 70 70 HOH HOH . E 4 HOH A 69 71 71 HOH HOH . E 4 HOH A 70 72 72 HOH HOH . E 4 HOH A 71 73 73 HOH HOH . E 4 HOH A 72 74 74 HOH HOH . E 4 HOH A 73 75 75 HOH HOH . E 4 HOH A 74 76 76 HOH HOH . E 4 HOH A 75 77 77 HOH HOH . E 4 HOH A 76 78 78 HOH HOH . E 4 HOH A 77 79 79 HOH HOH . E 4 HOH A 78 80 80 HOH HOH . E 4 HOH A 79 81 81 HOH HOH . E 4 HOH A 80 82 82 HOH HOH . E 4 HOH A 81 83 83 HOH HOH . E 4 HOH A 82 84 84 HOH HOH . E 4 HOH A 83 85 85 HOH HOH . E 4 HOH A 84 86 86 HOH HOH . E 4 HOH A 85 87 87 HOH HOH . E 4 HOH A 86 88 88 HOH HOH . E 4 HOH A 87 89 89 HOH HOH . E 4 HOH A 88 90 90 HOH HOH . E 4 HOH A 89 91 91 HOH HOH . E 4 HOH A 90 92 92 HOH HOH . E 4 HOH A 91 93 93 HOH HOH . E 4 HOH A 92 94 94 HOH HOH . E 4 HOH A 93 95 95 HOH HOH . E 4 HOH A 94 96 96 HOH HOH . E 4 HOH A 95 97 97 HOH HOH . E 4 HOH A 96 98 98 HOH HOH . E 4 HOH A 97 403 1 HOH HOH . E 4 HOH A 98 404 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 0.286 28.676 22.42 1 60.42 ? C1 EDO 402 A 1 HETATM 2 O O1 EDO . . . C 3 0.498 30.033 22.854 1 63.38 ? O1 EDO 402 A 1 HETATM 3 C C2 EDO . . . C 3 -0.92 28.603 21.479 1 57.2 ? C2 EDO 402 A 1 HETATM 4 O O2 EDO . . . C 3 -1.097 27.262 20.993 1 55.6 ? O2 EDO 402 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #