data_3UP4
#
_model_server_result.job_id            yvnQ27bvjUeHrphm-kH9Gw 
_model_server_result.datetime_utc      '2024-11-29 14:03:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3up4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":551}' 
#
_entry.id    3UP4 
#
_exptl.entry_id    3UP4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3UP4 
_cell.length_a            61.314 
_cell.length_b            66.2 
_cell.length_c            282.698 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3UP4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
A,B,C,D,E,F,G,H 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 444 A CYS 444 1_555 A SG CYS 449 A CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? 
disulf ? disulf2 B SG CYS 444 B CYS 444 1_555 B SG CYS 449 B CYS 449 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     3UP4 
_atom_sites.fract_transf_matrix[1][1]    0.016309 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015106 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 551 551 FAD FAD . 
D 3 NAP A 1 552 552 NAP NAP . 
E 2 FAD B 1 551 551 FAD FAD . 
F 3 NAP B 1 552 552 NAP NAP . 
G 4 HOH A 1 546 6 HOH HOH . 
G 4 HOH A 2 547 7 HOH HOH . 
G 4 HOH A 3 548 10 HOH HOH . 
G 4 HOH A 4 549 12 HOH HOH . 
G 4 HOH A 5 550 13 HOH HOH . 
G 4 HOH A 6 553 19 HOH HOH . 
G 4 HOH A 7 554 22 HOH HOH . 
G 4 HOH A 8 555 25 HOH HOH . 
G 4 HOH A 9 556 27 HOH HOH . 
G 4 HOH A 10 557 29 HOH HOH . 
G 4 HOH A 11 558 30 HOH HOH . 
G 4 HOH A 12 559 31 HOH HOH . 
G 4 HOH A 13 560 32 HOH HOH . 
G 4 HOH A 14 561 35 HOH HOH . 
G 4 HOH A 15 562 38 HOH HOH . 
G 4 HOH A 16 563 41 HOH HOH . 
G 4 HOH A 17 564 46 HOH HOH . 
H 4 HOH B 1 546 1 HOH HOH . 
H 4 HOH B 2 547 2 HOH HOH . 
H 4 HOH B 3 548 3 HOH HOH . 
H 4 HOH B 4 549 4 HOH HOH . 
H 4 HOH B 5 550 5 HOH HOH . 
H 4 HOH B 6 553 8 HOH HOH . 
H 4 HOH B 7 554 9 HOH HOH . 
H 4 HOH B 8 555 11 HOH HOH . 
H 4 HOH B 9 556 14 HOH HOH . 
H 4 HOH B 10 557 15 HOH HOH . 
H 4 HOH B 11 558 16 HOH HOH . 
H 4 HOH B 12 559 17 HOH HOH . 
H 4 HOH B 13 560 18 HOH HOH . 
H 4 HOH B 14 561 20 HOH HOH . 
H 4 HOH B 15 562 21 HOH HOH . 
H 4 HOH B 16 563 23 HOH HOH . 
H 4 HOH B 17 564 24 HOH HOH . 
H 4 HOH B 18 565 26 HOH HOH . 
H 4 HOH B 19 566 28 HOH HOH . 
H 4 HOH B 20 567 33 HOH HOH . 
H 4 HOH B 21 568 34 HOH HOH . 
H 4 HOH B 22 569 36 HOH HOH . 
H 4 HOH B 23 570 37 HOH HOH . 
H 4 HOH B 24 571 39 HOH HOH . 
H 4 HOH B 25 572 40 HOH HOH . 
H 4 HOH B 26 573 42 HOH HOH . 
H 4 HOH B 27 574 43 HOH HOH . 
H 4 HOH B 28 575 44 HOH HOH . 
H 4 HOH B 29 576 45 HOH HOH . 
H 4 HOH B 30 577 47 HOH HOH . 
H 4 HOH B 31 578 48 HOH HOH . 
H 4 HOH B 32 579 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 8.783 -4.429 -57.004 1 16.28 ? PA FAD 551 A 1 
HETATM 2 O O1A FAD . . . C 2 10.14 -4.946 -57.362 1 16.81 ? O1A FAD 551 A 1 
HETATM 3 O O2A FAD . . . C 2 7.864 -5.466 -56.413 1 16.13 ? O2A FAD 551 A 1 
HETATM 4 O O5B FAD . . . C 2 8.176 -3.837 -58.356 1 16.72 ? O5B FAD 551 A 1 
HETATM 5 C C5B FAD . . . C 2 8.995 -2.935 -59.069 1 18.83 ? C5B FAD 551 A 1 
HETATM 6 C C4B FAD . . . C 2 8.628 -2.983 -60.545 1 19.51 ? C4B FAD 551 A 1 
HETATM 7 O O4B FAD . . . C 2 9.28 -1.943 -61.227 1 19.74 ? O4B FAD 551 A 1 
HETATM 8 C C3B FAD . . . C 2 9.086 -4.259 -61.214 1 19.84 ? C3B FAD 551 A 1 
HETATM 9 O O3B FAD . . . C 2 7.934 -4.851 -61.718 1 21.72 ? O3B FAD 551 A 1 
HETATM 10 C C2B FAD . . . C 2 9.926 -3.834 -62.388 1 20.88 ? C2B FAD 551 A 1 
HETATM 11 O O2B FAD . . . C 2 9.579 -4.503 -63.585 1 20.66 ? O2B FAD 551 A 1 
HETATM 12 C C1B FAD . . . C 2 9.585 -2.37 -62.531 1 20.43 ? C1B FAD 551 A 1 
HETATM 13 N N9A FAD . . . C 2 10.728 -1.622 -63.088 1 19.98 ? N9A FAD 551 A 1 
HETATM 14 C C8A FAD . . . C 2 11.981 -1.535 -62.552 1 20.03 ? C8A FAD 551 A 1 
HETATM 15 N N7A FAD . . . C 2 12.729 -0.756 -63.364 1 20.47 ? N7A FAD 551 A 1 
HETATM 16 C C5A FAD . . . C 2 11.97 -0.35 -64.399 1 19.21 ? C5A FAD 551 A 1 
HETATM 17 C C6A FAD . . . C 2 12.233 0.459 -65.496 1 19.24 ? C6A FAD 551 A 1 
HETATM 18 N N6A FAD . . . C 2 13.174 1.384 -65.392 1 19.23 ? N6A FAD 551 A 1 
HETATM 19 N N1A FAD . . . C 2 11.224 0.693 -66.409 1 20.04 ? N1A FAD 551 A 1 
HETATM 20 C C2A FAD . . . C 2 9.965 0.153 -66.245 1 19.94 ? C2A FAD 551 A 1 
HETATM 21 N N3A FAD . . . C 2 9.728 -0.636 -65.139 1 20.52 ? N3A FAD 551 A 1 
HETATM 22 C C4A FAD . . . C 2 10.71 -0.889 -64.238 1 19.07 ? C4A FAD 551 A 1 
HETATM 23 N N1 FAD . . . C 2 9.308 -8.204 -48.584 1 16.8 ? N1 FAD 551 A 1 
HETATM 24 C C2 FAD . . . C 2 8.52 -8.394 -47.506 1 16.73 ? C2 FAD 551 A 1 
HETATM 25 O O2 FAD . . . C 2 8.249 -7.411 -46.832 1 18.86 ? O2 FAD 551 A 1 
HETATM 26 N N3 FAD . . . C 2 8.052 -9.653 -47.205 1 16.75 ? N3 FAD 551 A 1 
HETATM 27 C C4 FAD . . . C 2 8.403 -10.727 -47.992 1 16.78 ? C4 FAD 551 A 1 
HETATM 28 O O4 FAD . . . C 2 7.986 -11.852 -47.705 1 15.97 ? O4 FAD 551 A 1 
HETATM 29 C C4X FAD . . . C 2 9.225 -10.526 -49.102 1 17.66 ? C4X FAD 551 A 1 
HETATM 30 N N5 FAD . . . C 2 9.595 -11.561 -49.937 1 17.08 ? N5 FAD 551 A 1 
HETATM 31 C C5X FAD . . . C 2 10.393 -11.329 -51.028 1 17.89 ? C5X FAD 551 A 1 
HETATM 32 C C6 FAD . . . C 2 10.76 -12.384 -51.867 1 17.63 ? C6 FAD 551 A 1 
HETATM 33 C C7 FAD . . . C 2 11.594 -12.14 -52.969 1 17.45 ? C7 FAD 551 A 1 
HETATM 34 C C7M FAD . . . C 2 12.015 -13.25 -53.889 1 15.58 ? C7M FAD 551 A 1 
HETATM 35 C C8 FAD . . . C 2 12.038 -10.836 -53.232 1 17.55 ? C8 FAD 551 A 1 
HETATM 36 C C8M FAD . . . C 2 12.924 -10.563 -54.411 1 16.87 ? C8M FAD 551 A 1 
HETATM 37 C C9 FAD . . . C 2 11.661 -9.781 -52.406 1 17.48 ? C9 FAD 551 A 1 
HETATM 38 C C9A FAD . . . C 2 10.845 -10.035 -51.302 1 19.16 ? C9A FAD 551 A 1 
HETATM 39 N N10 FAD . . . C 2 10.471 -8.998 -50.478 1 20.5 ? N10 FAD 551 A 1 
HETATM 40 C C10 FAD . . . C 2 9.667 -9.251 -49.386 1 18.37 ? C10 FAD 551 A 1 
HETATM 41 C C1' FAD . . . C 2 10.935 -7.584 -50.756 1 22.51 ? C1' FAD 551 A 1 
HETATM 42 C C2' FAD . . . C 2 10.075 -7.013 -51.889 1 23.29 ? C2' FAD 551 A 1 
HETATM 43 O O2' FAD . . . C 2 10.879 -6.191 -52.703 1 26.59 ? O2' FAD 551 A 1 
HETATM 44 C C3' FAD . . . C 2 8.875 -6.205 -51.403 1 22.78 ? C3' FAD 551 A 1 
HETATM 45 O O3' FAD . . . C 2 8.035 -7.052 -50.659 1 23.38 ? O3' FAD 551 A 1 
HETATM 46 C C4' FAD . . . C 2 8.016 -5.651 -52.534 1 22.02 ? C4' FAD 551 A 1 
HETATM 47 O O4' FAD . . . C 2 7.744 -6.633 -53.513 1 21.84 ? O4' FAD 551 A 1 
HETATM 48 C C5' FAD . . . C 2 8.647 -4.479 -53.262 1 20.8 ? C5' FAD 551 A 1 
HETATM 49 O O5' FAD . . . C 2 7.612 -4.071 -54.117 1 19.5 ? O5' FAD 551 A 1 
HETATM 50 P P FAD . . . C 2 7.736 -2.763 -55.013 1 17.12 ? P FAD 551 A 1 
HETATM 51 O O1P FAD . . . C 2 6.421 -2.688 -55.777 1 15 ? O1P FAD 551 A 1 
HETATM 52 O O2P FAD . . . C 2 8.115 -1.561 -54.188 1 12.53 ? O2P FAD 551 A 1 
HETATM 53 O O3P FAD . . . C 2 8.95 -3.194 -55.988 1 17.27 ? O3P FAD 551 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#