data_3UPC # _model_server_result.job_id bdQMYivBRZy1yGPz8F99FA _model_server_result.datetime_utc '2024-10-18 16:31:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3upc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":116}' # _entry.id 3UPC # _exptl.entry_id 3UPC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UPC _cell.length_a 82.61 _cell.length_b 143.12 _cell.length_c 145.61 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UPC _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 ? monomeric 1 author_defined_assembly 4 ? monomeric 1 author_defined_assembly 5 ? monomeric 1 author_defined_assembly 6 ? monomeric 1 author_defined_assembly 7 ? monomeric 1 author_defined_assembly 8 ? monomeric 1 author_defined_assembly 9 ? monomeric 1 author_defined_assembly 10 PISA dimeric 2 software_defined_assembly 11 PISA dimeric 2 software_defined_assembly 12 PISA dimeric 2 software_defined_assembly 13 PISA dimeric 2 software_defined_assembly 14 PISA dimeric 2 software_defined_assembly 15 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,K 1 1 B,L 2 1 C,M 3 1 D,N 4 1 E 5 1 F 6 1 G,O 7 1 H,P 8 1 I,Q 9 1 J 10 1 A,B,K,L 11 1 C,D,M,N 12 1 E,I,Q 13 1 F,J 14 1 G,H,O,P 15 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 O N N ? 5 P N N ? 5 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 22 1_555 A SG CYS 94 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 B SG CYS 20 B CYS 22 1_555 B SG CYS 94 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 C SG CYS 20 C CYS 22 1_555 C SG CYS 94 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? disulf ? disulf4 D SG CYS 20 D CYS 22 1_555 D SG CYS 94 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 E SG CYS 20 E CYS 22 1_555 E SG CYS 94 E CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf6 F SG CYS 20 F CYS 22 1_555 F SG CYS 94 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 G SG CYS 20 G CYS 22 1_555 G SG CYS 94 G CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf8 H SG CYS 20 H CYS 22 1_555 H SG CYS 94 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf9 I SG CYS 20 I CYS 22 1_555 I SG CYS 94 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 J SG CYS 20 J CYS 22 1_555 J SG CYS 94 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 267 n n O1 HO1 PG4 sing 268 n n C1 C2 PG4 sing 269 n n C1 H11 PG4 sing 270 n n C1 H12 PG4 sing 271 n n C2 O2 PG4 sing 272 n n C2 H21 PG4 sing 273 n n C2 H22 PG4 sing 274 n n O2 C3 PG4 sing 275 n n C3 C4 PG4 sing 276 n n C3 H31 PG4 sing 277 n n C3 H32 PG4 sing 278 n n C4 O3 PG4 sing 279 n n C4 H41 PG4 sing 280 n n C4 H42 PG4 sing 281 n n O3 C5 PG4 sing 282 n n C5 C6 PG4 sing 283 n n C5 H51 PG4 sing 284 n n C5 H52 PG4 sing 285 n n C6 O4 PG4 sing 286 n n C6 H61 PG4 sing 287 n n C6 H62 PG4 sing 288 n n O4 C7 PG4 sing 289 n n C7 C8 PG4 sing 290 n n C7 H71 PG4 sing 291 n n C7 H72 PG4 sing 292 n n C8 O5 PG4 sing 293 n n C8 H81 PG4 sing 294 n n C8 H82 PG4 sing 295 n n O5 HO5 PG4 sing 296 n n # _atom_sites.entry_id 3UPC _atom_sites.fract_transf_matrix[1][1] 0.012105 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006987 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 1PE A 1 2 2 1PE 1PE . L 3 PGE B 1 116 6 PGE PGE . M 4 PEG C 1 116 7 PEG PEG . N 2 1PE D 1 116 3 1PE 1PE . O 5 PG4 G 1 116 4 PG4 PG4 . P 5 PG4 H 1 1 1 PG4 PG4 . Q 5 PG4 I 1 116 5 PG4 PG4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . Q 5 -0.05 -46.313 -24.725 1 51.83 ? O1 PG4 116 I 1 HETATM 2 C C1 PG4 . . . Q 5 -0.276 -45.397 -25.817 1 69.17 ? C1 PG4 116 I 1 HETATM 3 C C2 PG4 . . . Q 5 0.68 -45.556 -27.017 1 58.82 ? C2 PG4 116 I 1 HETATM 4 O O2 PG4 . . . Q 5 0.534 -44.393 -27.862 1 59.3 ? O2 PG4 116 I 1 HETATM 5 C C3 PG4 . . . Q 5 1.599 -44.075 -28.779 1 59.43 ? C3 PG4 116 I 1 HETATM 6 C C4 PG4 . . . Q 5 1.145 -43.768 -30.212 1 53.82 ? C4 PG4 116 I 1 HETATM 7 O O3 PG4 . . . Q 5 1.216 -44.936 -31.05 1 70.49 ? O3 PG4 116 I 1 HETATM 8 C C5 PG4 . . . Q 5 0.546 -44.796 -32.313 1 65.67 ? C5 PG4 116 I 1 HETATM 9 C C6 PG4 . . . Q 5 0.896 -45.945 -33.271 1 71.11 ? C6 PG4 116 I 1 HETATM 10 O O4 PG4 . . . Q 5 0.654 -45.6 -34.652 1 64.13 ? O4 PG4 116 I 1 HETATM 11 C C7 PG4 . . . Q 5 1.665 -44.801 -35.292 1 48.75 ? C7 PG4 116 I 1 HETATM 12 C C8 PG4 . . . Q 5 2.541 -45.65 -36.226 1 48.86 ? C8 PG4 116 I 1 HETATM 13 O O5 PG4 . . . Q 5 3.578 -44.86 -36.855 1 45.68 ? O5 PG4 116 I 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #