data_3UQ2 # _model_server_result.job_id azL3S3Tb14sUIrm1tBYl7A _model_server_result.datetime_utc '2024-10-18 16:27:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uq2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":576}' # _entry.id 3UQ2 # _exptl.entry_id 3UQ2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.975 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PYROPHOSPHATE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UQ2 _cell.length_a 55.286 _cell.length_b 62.002 _cell.length_c 141.47 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UQ2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 1 1_555 H O HOH . A HOH 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc2 F MG MG . A MG 1 1_555 A OD1 ASP 186 A ASP 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 F MG MG . A MG 1 1_555 A OD1 ASP 188 A ASP 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.205 ? metalc ? metalc4 F MG MG . A MG 1 1_555 E O21 PPV . A PPV 576 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.093 ? metalc ? metalc5 F MG MG . A MG 1 1_555 E O32 PPV . A PPV 576 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.441 ? metalc ? metalc6 F MG MG . A MG 1 1_555 E O32 PPV . A PPV 576 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.498 ? metalc ? metalc7 F MG MG . A MG 1 1_555 C OP1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 G NA NA . A NA 3 1_555 A O SER 98 A SER 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc9 G NA NA . A NA 3 1_555 A O ILE 100 A ILE 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? metalc ? metalc10 G NA NA . A NA 3 1_555 A O ALA 103 A ALA 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc11 G NA NA . A NA 3 1_555 C OP1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc12 G NA NA . A NA 3 1_555 J O HOH . P HOH 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 T DC 1 1_555 D N1 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 T DC 1 1_555 D O6 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 T DC 1 1_555 D N2 DG 4 D DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DG 2 T DG 2 1_555 D N3 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N2 DG 2 T DG 2 1_555 D O2 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B O6 DG 2 T DG 2 1_555 D N4 DC 3 D DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N1 DG 3 T DG 3 1_555 D N3 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N2 DG 3 T DG 3 1_555 D O2 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O6 DG 3 T DG 3 1_555 D N4 DC 2 D DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N3 DC 4 T DC 4 1_555 D N1 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N4 DC 4 T DC 4 1_555 D O6 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O2 DC 4 T DC 4 1_555 D N2 DG 1 D DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N3 DT 5 T DT 5 1_555 C N1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O4 DT 5 T DT 5 1_555 C N6 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N1 DG 6 T DG 6 1_555 C N3 C 6 P C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N2 DG 6 T DG 6 1_555 C O2 C 6 P C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O6 DG 6 T DG 6 1_555 C N4 C 6 P C 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DT 7 T DT 7 1_555 C N1 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O4 DT 7 T DT 7 1_555 C N6 DA 5 P DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N1 DA 8 T DA 8 1_555 C N3 DT 4 P DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N6 DA 8 T DA 8 1_555 C O4 DT 4 P DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N3 DC 9 T DC 9 1_555 C N1 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N4 DC 9 T DC 9 1_555 C O6 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B O2 DC 9 T DC 9 1_555 C N2 DG 3 P DG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N3 DT 10 T DT 10 1_555 C N1 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O4 DT 10 T DT 10 1_555 C N6 DA 2 P DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B N1 DG 11 T DG 11 1_555 C N3 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N2 DG 11 T DG 11 1_555 C O2 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B O6 DG 11 T DG 11 1_555 C N4 DC 1 P DC 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'H4 O7 P2' _chem_comp.formula_weight 177.975 _chem_comp.id PPV _chem_comp.mon_nstd_flag . _chem_comp.name PYROPHOSPHATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 P1 PPV sing 445 n n O11 H11 PPV sing 446 n n P1 O21 PPV sing 447 n n P1 O31 PPV doub 448 n n P1 OPP PPV sing 449 n n O21 H21 PPV sing 450 n n OPP P2 PPV sing 451 n n P2 O12 PPV sing 452 n n P2 O22 PPV doub 453 n n P2 O32 PPV sing 454 n n O12 H12 PPV sing 455 n n O32 H32 PPV sing 456 n n # _atom_sites.entry_id 3UQ2 _atom_sites.fract_transf_matrix[1][1] 0.018088 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007069 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 PPV A 1 576 412 PPV PPV . F 6 MG A 1 1 1 MG MG . G 7 NA A 1 3 3 NA NA . H 8 HOH A 1 2 2 HOH HOH . H 8 HOH A 2 4 4 HOH HOH . H 8 HOH A 3 5 5 HOH HOH . H 8 HOH A 4 6 6 HOH HOH . H 8 HOH A 5 9 9 HOH HOH . H 8 HOH A 6 10 10 HOH HOH . H 8 HOH A 7 12 12 HOH HOH . H 8 HOH A 8 13 13 HOH HOH . H 8 HOH A 9 14 14 HOH HOH . H 8 HOH A 10 15 15 HOH HOH . H 8 HOH A 11 17 17 HOH HOH . H 8 HOH A 12 19 19 HOH HOH . H 8 HOH A 13 20 20 HOH HOH . H 8 HOH A 14 21 21 HOH HOH . H 8 HOH A 15 22 22 HOH HOH . H 8 HOH A 16 23 23 HOH HOH . H 8 HOH A 17 24 24 HOH HOH . H 8 HOH A 18 26 26 HOH HOH . H 8 HOH A 19 27 27 HOH HOH . H 8 HOH A 20 28 28 HOH HOH . H 8 HOH A 21 29 29 HOH HOH . H 8 HOH A 22 30 30 HOH HOH . H 8 HOH A 23 34 34 HOH HOH . H 8 HOH A 24 35 35 HOH HOH . H 8 HOH A 25 36 36 HOH HOH . H 8 HOH A 26 37 37 HOH HOH . H 8 HOH A 27 38 38 HOH HOH . H 8 HOH A 28 39 39 HOH HOH . H 8 HOH A 29 40 40 HOH HOH . H 8 HOH A 30 43 43 HOH HOH . H 8 HOH A 31 44 44 HOH HOH . H 8 HOH A 32 45 45 HOH HOH . H 8 HOH A 33 51 51 HOH HOH . H 8 HOH A 34 52 52 HOH HOH . H 8 HOH A 35 55 55 HOH HOH . H 8 HOH A 36 58 58 HOH HOH . H 8 HOH A 37 59 59 HOH HOH . H 8 HOH A 38 61 61 HOH HOH . H 8 HOH A 39 62 62 HOH HOH . H 8 HOH A 40 64 64 HOH HOH . H 8 HOH A 41 65 65 HOH HOH . H 8 HOH A 42 67 67 HOH HOH . H 8 HOH A 43 69 69 HOH HOH . H 8 HOH A 44 70 70 HOH HOH . H 8 HOH A 45 71 71 HOH HOH . H 8 HOH A 46 72 72 HOH HOH . H 8 HOH A 47 74 74 HOH HOH . H 8 HOH A 48 77 77 HOH HOH . H 8 HOH A 49 78 78 HOH HOH . H 8 HOH A 50 79 79 HOH HOH . H 8 HOH A 51 80 80 HOH HOH . H 8 HOH A 52 81 81 HOH HOH . H 8 HOH A 53 83 83 HOH HOH . H 8 HOH A 54 84 84 HOH HOH . H 8 HOH A 55 86 86 HOH HOH . H 8 HOH A 56 87 87 HOH HOH . H 8 HOH A 57 88 88 HOH HOH . H 8 HOH A 58 89 89 HOH HOH . H 8 HOH A 59 92 92 HOH HOH . H 8 HOH A 60 93 93 HOH HOH . H 8 HOH A 61 94 94 HOH HOH . H 8 HOH A 62 95 95 HOH HOH . H 8 HOH A 63 96 96 HOH HOH . H 8 HOH A 64 97 97 HOH HOH . H 8 HOH A 65 99 99 HOH HOH . H 8 HOH A 66 100 100 HOH HOH . H 8 HOH A 67 101 101 HOH HOH . H 8 HOH A 68 102 102 HOH HOH . H 8 HOH A 69 103 103 HOH HOH . H 8 HOH A 70 104 104 HOH HOH . H 8 HOH A 71 106 106 HOH HOH . H 8 HOH A 72 108 108 HOH HOH . H 8 HOH A 73 111 111 HOH HOH . H 8 HOH A 74 112 112 HOH HOH . H 8 HOH A 75 114 114 HOH HOH . H 8 HOH A 76 115 115 HOH HOH . H 8 HOH A 77 117 117 HOH HOH . H 8 HOH A 78 118 118 HOH HOH . H 8 HOH A 79 119 119 HOH HOH . H 8 HOH A 80 577 1 HOH HOH . H 8 HOH A 81 578 3 HOH HOH . I 8 HOH T 1 12 7 HOH HOH . I 8 HOH T 2 13 11 HOH HOH . I 8 HOH T 3 16 16 HOH HOH . I 8 HOH T 4 31 31 HOH HOH . I 8 HOH T 5 42 42 HOH HOH . I 8 HOH T 6 49 49 HOH HOH . I 8 HOH T 7 56 56 HOH HOH . I 8 HOH T 8 57 57 HOH HOH . I 8 HOH T 9 68 68 HOH HOH . I 8 HOH T 10 75 75 HOH HOH . I 8 HOH T 11 91 91 HOH HOH . I 8 HOH T 12 98 98 HOH HOH . J 8 HOH P 1 8 8 HOH HOH . J 8 HOH P 2 18 18 HOH HOH . J 8 HOH P 3 25 25 HOH HOH . J 8 HOH P 4 32 32 HOH HOH . J 8 HOH P 5 33 33 HOH HOH . J 8 HOH P 6 41 41 HOH HOH . J 8 HOH P 7 46 46 HOH HOH . J 8 HOH P 8 47 47 HOH HOH . J 8 HOH P 9 48 48 HOH HOH . J 8 HOH P 10 50 50 HOH HOH . J 8 HOH P 11 53 53 HOH HOH . J 8 HOH P 12 54 54 HOH HOH . J 8 HOH P 13 60 60 HOH HOH . J 8 HOH P 14 73 73 HOH HOH . J 8 HOH P 15 82 82 HOH HOH . J 8 HOH P 16 105 105 HOH HOH . J 8 HOH P 17 109 109 HOH HOH . J 8 HOH P 18 116 116 HOH HOH . K 8 HOH D 1 76 76 HOH HOH . K 8 HOH D 2 90 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O11 PPV . A . E 5 17.845 7.6 -17.774 0.8 42.98 ? O11 PPV 576 A 1 HETATM 2 O O11 PPV . B . E 5 21.89 9.582 -16.937 0.2 55.31 ? O11 PPV 576 A 1 HETATM 3 P P1 PPV . A . E 5 18.145 7.508 -16.296 0.8 42.49 ? P1 PPV 576 A 1 HETATM 4 P P1 PPV . B . E 5 20.395 9.64 -16.719 0.2 58.56 ? P1 PPV 576 A 1 HETATM 5 O O21 PPV . A . E 5 18.112 6.038 -15.919 0.8 36.14 ? O21 PPV 576 A 1 HETATM 6 O O21 PPV . B . E 5 19.747 9.812 -18.081 0.2 54.45 ? O21 PPV 576 A 1 HETATM 7 O O31 PPV . A . E 5 17.119 8.325 -15.537 0.8 52.48 ? O31 PPV 576 A 1 HETATM 8 O O31 PPV . B . E 5 20.082 10.786 -15.778 0.2 55.1 ? O31 PPV 576 A 1 HETATM 9 O OPP PPV . A . E 5 19.566 8.08 -15.949 0.8 58.51 ? OPP PPV 576 A 1 HETATM 10 O OPP PPV . B . E 5 19.846 8.32 -16.069 0.2 56.4 ? OPP PPV 576 A 1 HETATM 11 P P2 PPV . A . E 5 20.052 8.025 -14.455 0.8 58.73 ? P2 PPV 576 A 1 HETATM 12 P P2 PPV . B . E 5 20.014 8.122 -14.519 0.2 58.19 ? P2 PPV 576 A 1 HETATM 13 O O12 PPV . A . E 5 20.285 9.43 -13.941 0.8 53.9 ? O12 PPV 576 A 1 HETATM 14 O O12 PPV . B . E 5 20.318 9.453 -13.863 0.2 53.94 ? O12 PPV 576 A 1 HETATM 15 O O22 PPV . A . E 5 21.338 7.233 -14.376 0.8 52.34 ? O22 PPV 576 A 1 HETATM 16 O O22 PPV . B . E 5 21.146 7.154 -14.258 0.2 52.14 ? O22 PPV 576 A 1 HETATM 17 O O32 PPV . A . E 5 18.988 7.343 -13.615 0.8 53.53 ? O32 PPV 576 A 1 HETATM 18 O O32 PPV . B . E 5 18.726 7.555 -13.951 0.2 53.18 ? O32 PPV 576 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #