data_3UQ6 # _model_server_result.job_id BOx9UcYSlW77CcufOoc4rg _model_server_result.datetime_utc '2024-11-22 19:28:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 3UQ6 # _exptl.entry_id 3UQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.241 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UQ6 _cell.length_a 59.983 _cell.length_b 180.53 _cell.length_c 78.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C10 H13 N5 O4' _chem_comp.formula_weight 267.241 _chem_comp.id ADN _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' ADN sing 1 n n O5' HO5' ADN sing 2 n n C5' C4' ADN sing 3 n n C5' "H5'1" ADN sing 4 n n C5' "H5'2" ADN sing 5 n n C4' O4' ADN sing 6 n n C4' C3' ADN sing 7 n n C4' H4' ADN sing 8 n n O4' C1' ADN sing 9 n n C3' O3' ADN sing 10 n n C3' C2' ADN sing 11 n n C3' H3' ADN sing 12 n n O3' HO3' ADN sing 13 n n C2' O2' ADN sing 14 n n C2' C1' ADN sing 15 n n C2' H2' ADN sing 16 n n O2' HO2' ADN sing 17 n n C1' N9 ADN sing 18 n n C1' H1' ADN sing 19 n n N9 C8 ADN sing 20 n y N9 C4 ADN sing 21 n y C8 N7 ADN doub 22 n y C8 H8 ADN sing 23 n n N7 C5 ADN sing 24 n y C5 C6 ADN sing 25 n y C5 C4 ADN doub 26 n y C6 N6 ADN sing 27 n n C6 N1 ADN doub 28 n y N6 HN61 ADN sing 29 n n N6 HN62 ADN sing 30 n n N1 C2 ADN sing 31 n y C2 N3 ADN doub 32 n y C2 H2 ADN sing 33 n n N3 C4 ADN sing 34 n y # _atom_sites.entry_id 3UQ6 _atom_sites.fract_transf_matrix[1][1] 0.016671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADN A 1 401 353 ADN ADN . D 3 AMP A 1 402 354 AMP AMP . E 4 CL A 1 403 355 CL CL . F 2 ADN B 1 401 353 ADN ADN . G 3 AMP B 1 402 354 AMP AMP . H 4 CL B 1 403 355 CL CL . I 5 HOH A 1 501 356 HOH HOH . I 5 HOH A 2 502 357 HOH HOH . I 5 HOH A 3 503 358 HOH HOH . I 5 HOH A 4 504 359 HOH HOH . I 5 HOH A 5 505 360 HOH HOH . I 5 HOH A 6 506 361 HOH HOH . I 5 HOH A 7 507 362 HOH HOH . I 5 HOH A 8 508 363 HOH HOH . I 5 HOH A 9 509 364 HOH HOH . I 5 HOH A 10 510 365 HOH HOH . I 5 HOH A 11 511 366 HOH HOH . I 5 HOH A 12 512 367 HOH HOH . I 5 HOH A 13 513 368 HOH HOH . I 5 HOH A 14 514 369 HOH HOH . I 5 HOH A 15 515 370 HOH HOH . I 5 HOH A 16 516 371 HOH HOH . I 5 HOH A 17 517 372 HOH HOH . I 5 HOH A 18 518 374 HOH HOH . I 5 HOH A 19 519 375 HOH HOH . I 5 HOH A 20 520 376 HOH HOH . I 5 HOH A 21 521 377 HOH HOH . I 5 HOH A 22 522 378 HOH HOH . I 5 HOH A 23 523 379 HOH HOH . I 5 HOH A 24 524 380 HOH HOH . I 5 HOH A 25 525 381 HOH HOH . I 5 HOH A 26 526 382 HOH HOH . I 5 HOH A 27 527 383 HOH HOH . I 5 HOH A 28 528 384 HOH HOH . I 5 HOH A 29 529 385 HOH HOH . I 5 HOH A 30 530 386 HOH HOH . I 5 HOH A 31 531 387 HOH HOH . I 5 HOH A 32 532 388 HOH HOH . I 5 HOH A 33 533 389 HOH HOH . I 5 HOH A 34 534 390 HOH HOH . I 5 HOH A 35 535 391 HOH HOH . I 5 HOH A 36 536 392 HOH HOH . I 5 HOH A 37 537 393 HOH HOH . I 5 HOH A 38 538 394 HOH HOH . I 5 HOH A 39 539 395 HOH HOH . I 5 HOH A 40 540 396 HOH HOH . I 5 HOH A 41 541 397 HOH HOH . I 5 HOH A 42 542 398 HOH HOH . I 5 HOH A 43 543 399 HOH HOH . I 5 HOH A 44 544 400 HOH HOH . I 5 HOH A 45 545 401 HOH HOH . I 5 HOH A 46 546 402 HOH HOH . I 5 HOH A 47 547 403 HOH HOH . I 5 HOH A 48 548 404 HOH HOH . I 5 HOH A 49 549 405 HOH HOH . I 5 HOH A 50 550 406 HOH HOH . I 5 HOH A 51 551 407 HOH HOH . I 5 HOH A 52 552 408 HOH HOH . I 5 HOH A 53 553 409 HOH HOH . I 5 HOH A 54 554 410 HOH HOH . I 5 HOH A 55 555 411 HOH HOH . I 5 HOH A 56 556 412 HOH HOH . I 5 HOH A 57 557 413 HOH HOH . I 5 HOH A 58 558 414 HOH HOH . I 5 HOH A 59 559 415 HOH HOH . I 5 HOH A 60 560 416 HOH HOH . I 5 HOH A 61 561 417 HOH HOH . I 5 HOH A 62 562 418 HOH HOH . I 5 HOH A 63 563 419 HOH HOH . I 5 HOH A 64 564 420 HOH HOH . I 5 HOH A 65 565 421 HOH HOH . I 5 HOH A 66 566 422 HOH HOH . I 5 HOH A 67 567 423 HOH HOH . I 5 HOH A 68 568 424 HOH HOH . I 5 HOH A 69 569 425 HOH HOH . I 5 HOH A 70 570 426 HOH HOH . I 5 HOH A 71 571 427 HOH HOH . I 5 HOH A 72 572 428 HOH HOH . I 5 HOH A 73 573 429 HOH HOH . I 5 HOH A 74 574 430 HOH HOH . I 5 HOH A 75 575 431 HOH HOH . I 5 HOH A 76 576 432 HOH HOH . I 5 HOH A 77 577 433 HOH HOH . I 5 HOH A 78 578 434 HOH HOH . I 5 HOH A 79 579 435 HOH HOH . I 5 HOH A 80 580 436 HOH HOH . I 5 HOH A 81 581 437 HOH HOH . I 5 HOH A 82 582 438 HOH HOH . I 5 HOH A 83 583 439 HOH HOH . I 5 HOH A 84 584 440 HOH HOH . I 5 HOH A 85 585 441 HOH HOH . I 5 HOH A 86 586 442 HOH HOH . I 5 HOH A 87 587 443 HOH HOH . I 5 HOH A 88 588 444 HOH HOH . I 5 HOH A 89 589 445 HOH HOH . I 5 HOH A 90 590 446 HOH HOH . I 5 HOH A 91 591 447 HOH HOH . I 5 HOH A 92 592 448 HOH HOH . I 5 HOH A 93 593 449 HOH HOH . I 5 HOH A 94 594 450 HOH HOH . I 5 HOH A 95 595 451 HOH HOH . I 5 HOH A 96 596 452 HOH HOH . I 5 HOH A 97 597 453 HOH HOH . I 5 HOH A 98 598 454 HOH HOH . I 5 HOH A 99 599 455 HOH HOH . J 5 HOH B 1 501 373 HOH HOH . J 5 HOH B 2 502 356 HOH HOH . J 5 HOH B 3 503 357 HOH HOH . J 5 HOH B 4 504 358 HOH HOH . J 5 HOH B 5 505 359 HOH HOH . J 5 HOH B 6 506 360 HOH HOH . J 5 HOH B 7 507 361 HOH HOH . J 5 HOH B 8 508 362 HOH HOH . J 5 HOH B 9 509 363 HOH HOH . J 5 HOH B 10 510 364 HOH HOH . J 5 HOH B 11 511 365 HOH HOH . J 5 HOH B 12 512 366 HOH HOH . J 5 HOH B 13 513 367 HOH HOH . J 5 HOH B 14 514 368 HOH HOH . J 5 HOH B 15 515 369 HOH HOH . J 5 HOH B 16 516 370 HOH HOH . J 5 HOH B 17 517 371 HOH HOH . J 5 HOH B 18 518 372 HOH HOH . J 5 HOH B 19 519 373 HOH HOH . J 5 HOH B 20 520 374 HOH HOH . J 5 HOH B 21 521 375 HOH HOH . J 5 HOH B 22 522 376 HOH HOH . J 5 HOH B 23 523 377 HOH HOH . J 5 HOH B 24 524 378 HOH HOH . J 5 HOH B 25 525 379 HOH HOH . J 5 HOH B 26 526 380 HOH HOH . J 5 HOH B 27 527 381 HOH HOH . J 5 HOH B 28 528 382 HOH HOH . J 5 HOH B 29 529 383 HOH HOH . J 5 HOH B 30 530 384 HOH HOH . J 5 HOH B 31 531 385 HOH HOH . J 5 HOH B 32 532 386 HOH HOH . J 5 HOH B 33 533 387 HOH HOH . J 5 HOH B 34 534 388 HOH HOH . J 5 HOH B 35 535 389 HOH HOH . J 5 HOH B 36 536 390 HOH HOH . J 5 HOH B 37 537 391 HOH HOH . J 5 HOH B 38 538 392 HOH HOH . J 5 HOH B 39 539 393 HOH HOH . J 5 HOH B 40 540 394 HOH HOH . J 5 HOH B 41 541 395 HOH HOH . J 5 HOH B 42 542 396 HOH HOH . J 5 HOH B 43 543 397 HOH HOH . J 5 HOH B 44 544 398 HOH HOH . J 5 HOH B 45 545 399 HOH HOH . J 5 HOH B 46 546 400 HOH HOH . J 5 HOH B 47 547 401 HOH HOH . J 5 HOH B 48 548 402 HOH HOH . J 5 HOH B 49 549 403 HOH HOH . J 5 HOH B 50 550 404 HOH HOH . J 5 HOH B 51 551 405 HOH HOH . J 5 HOH B 52 552 406 HOH HOH . J 5 HOH B 53 553 407 HOH HOH . J 5 HOH B 54 554 408 HOH HOH . J 5 HOH B 55 555 409 HOH HOH . J 5 HOH B 56 556 410 HOH HOH . J 5 HOH B 57 557 411 HOH HOH . J 5 HOH B 58 558 412 HOH HOH . J 5 HOH B 59 559 413 HOH HOH . J 5 HOH B 60 560 414 HOH HOH . J 5 HOH B 61 561 415 HOH HOH . J 5 HOH B 62 562 416 HOH HOH . J 5 HOH B 63 563 417 HOH HOH . J 5 HOH B 64 564 418 HOH HOH . J 5 HOH B 65 565 419 HOH HOH . J 5 HOH B 66 566 420 HOH HOH . J 5 HOH B 67 567 421 HOH HOH . J 5 HOH B 68 568 422 HOH HOH . J 5 HOH B 69 569 423 HOH HOH . J 5 HOH B 70 570 424 HOH HOH . J 5 HOH B 71 571 425 HOH HOH . J 5 HOH B 72 572 426 HOH HOH . J 5 HOH B 73 573 427 HOH HOH . J 5 HOH B 74 574 428 HOH HOH . J 5 HOH B 75 575 429 HOH HOH . J 5 HOH B 76 576 430 HOH HOH . J 5 HOH B 77 577 431 HOH HOH . J 5 HOH B 78 578 432 HOH HOH . J 5 HOH B 79 579 433 HOH HOH . J 5 HOH B 80 580 434 HOH HOH . J 5 HOH B 81 581 435 HOH HOH . J 5 HOH B 82 582 436 HOH HOH . J 5 HOH B 83 583 437 HOH HOH . J 5 HOH B 84 584 438 HOH HOH . J 5 HOH B 85 585 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' ADN . . . F 2 22.313 -23.012 -28.294 1 32.94 ? O5' ADN 401 B 1 HETATM 2 C C5' ADN . . . F 2 22.314 -21.833 -27.496 1 31.72 ? C5' ADN 401 B 1 HETATM 3 C C4' ADN . . . F 2 22.923 -22.084 -26.139 1 29.68 ? C4' ADN 401 B 1 HETATM 4 O O4' ADN . . . F 2 24.362 -22.096 -26.254 1 29.14 ? O4' ADN 401 B 1 HETATM 5 C C3' ADN . . . F 2 22.589 -21.045 -25.058 1 28.85 ? C3' ADN 401 B 1 HETATM 6 O O3' ADN . . . F 2 21.891 -21.678 -23.987 1 27.61 ? O3' ADN 401 B 1 HETATM 7 C C2' ADN . . . F 2 23.965 -20.556 -24.564 1 29.71 ? C2' ADN 401 B 1 HETATM 8 O O2' ADN . . . F 2 24.056 -20.361 -23.168 1 31.19 ? O2' ADN 401 B 1 HETATM 9 C C1' ADN . . . F 2 24.902 -21.661 -25.04 1 29.16 ? C1' ADN 401 B 1 HETATM 10 N N9 ADN . . . F 2 26.28 -21.22 -25.269 1 29.65 ? N9 ADN 401 B 1 HETATM 11 C C8 ADN . . . F 2 26.671 -20.093 -25.876 1 30.77 ? C8 ADN 401 B 1 HETATM 12 N N7 ADN . . . F 2 28.008 -20.063 -25.87 1 30.11 ? N7 ADN 401 B 1 HETATM 13 C C5 ADN . . . F 2 28.479 -21.194 -25.242 1 29.24 ? C5 ADN 401 B 1 HETATM 14 C C6 ADN . . . F 2 29.787 -21.695 -24.945 1 28.66 ? C6 ADN 401 B 1 HETATM 15 N N6 ADN . . . F 2 30.994 -20.934 -25.342 1 29.05 ? N6 ADN 401 B 1 HETATM 16 N N1 ADN . . . F 2 29.896 -22.87 -24.294 1 26.74 ? N1 ADN 401 B 1 HETATM 17 C C2 ADN . . . F 2 28.815 -23.562 -23.934 1 26.2 ? C2 ADN 401 B 1 HETATM 18 N N3 ADN . . . F 2 27.567 -23.113 -24.201 1 27.15 ? N3 ADN 401 B 1 HETATM 19 C C4 ADN . . . F 2 27.383 -21.93 -24.857 1 28.7 ? C4 ADN 401 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 19 #