data_3UQ6 # _model_server_result.job_id '_n4Tz7lukkznNprO8LXcvg' _model_server_result.datetime_utc '2024-11-22 19:24:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3uq6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 3UQ6 # _exptl.entry_id 3UQ6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UQ6 _cell.length_a 59.983 _cell.length_b 180.53 _cell.length_c 78.329 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UQ6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 47 n n P O2P AMP sing 48 n n P O3P AMP sing 49 n n P O5' AMP sing 50 n n O2P HOP2 AMP sing 51 n n O3P HOP3 AMP sing 52 n n O5' C5' AMP sing 53 n n C5' C4' AMP sing 54 n n C5' "H5'1" AMP sing 55 n n C5' "H5'2" AMP sing 56 n n C4' O4' AMP sing 57 n n C4' C3' AMP sing 58 n n C4' H4' AMP sing 59 n n O4' C1' AMP sing 60 n n C3' O3' AMP sing 61 n n C3' C2' AMP sing 62 n n C3' H3' AMP sing 63 n n O3' HO3' AMP sing 64 n n C2' O2' AMP sing 65 n n C2' C1' AMP sing 66 n n C2' H2' AMP sing 67 n n O2' HO2' AMP sing 68 n n C1' N9 AMP sing 69 n n C1' H1' AMP sing 70 n n N9 C8 AMP sing 71 n y N9 C4 AMP sing 72 n y C8 N7 AMP doub 73 n y C8 H8 AMP sing 74 n n N7 C5 AMP sing 75 n y C5 C6 AMP sing 76 n y C5 C4 AMP doub 77 n y C6 N6 AMP sing 78 n n C6 N1 AMP doub 79 n y N6 HN61 AMP sing 80 n n N6 HN62 AMP sing 81 n n N1 C2 AMP sing 82 n y C2 N3 AMP doub 83 n y C2 H2 AMP sing 84 n n N3 C4 AMP sing 85 n y # _atom_sites.entry_id 3UQ6 _atom_sites.fract_transf_matrix[1][1] 0.016671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012767 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADN A 1 401 353 ADN ADN . D 3 AMP A 1 402 354 AMP AMP . E 4 CL A 1 403 355 CL CL . F 2 ADN B 1 401 353 ADN ADN . G 3 AMP B 1 402 354 AMP AMP . H 4 CL B 1 403 355 CL CL . I 5 HOH A 1 501 356 HOH HOH . I 5 HOH A 2 502 357 HOH HOH . I 5 HOH A 3 503 358 HOH HOH . I 5 HOH A 4 504 359 HOH HOH . I 5 HOH A 5 505 360 HOH HOH . I 5 HOH A 6 506 361 HOH HOH . I 5 HOH A 7 507 362 HOH HOH . I 5 HOH A 8 508 363 HOH HOH . I 5 HOH A 9 509 364 HOH HOH . I 5 HOH A 10 510 365 HOH HOH . I 5 HOH A 11 511 366 HOH HOH . I 5 HOH A 12 512 367 HOH HOH . I 5 HOH A 13 513 368 HOH HOH . I 5 HOH A 14 514 369 HOH HOH . I 5 HOH A 15 515 370 HOH HOH . I 5 HOH A 16 516 371 HOH HOH . I 5 HOH A 17 517 372 HOH HOH . I 5 HOH A 18 518 374 HOH HOH . I 5 HOH A 19 519 375 HOH HOH . I 5 HOH A 20 520 376 HOH HOH . I 5 HOH A 21 521 377 HOH HOH . I 5 HOH A 22 522 378 HOH HOH . I 5 HOH A 23 523 379 HOH HOH . I 5 HOH A 24 524 380 HOH HOH . I 5 HOH A 25 525 381 HOH HOH . I 5 HOH A 26 526 382 HOH HOH . I 5 HOH A 27 527 383 HOH HOH . I 5 HOH A 28 528 384 HOH HOH . I 5 HOH A 29 529 385 HOH HOH . I 5 HOH A 30 530 386 HOH HOH . I 5 HOH A 31 531 387 HOH HOH . I 5 HOH A 32 532 388 HOH HOH . I 5 HOH A 33 533 389 HOH HOH . I 5 HOH A 34 534 390 HOH HOH . I 5 HOH A 35 535 391 HOH HOH . I 5 HOH A 36 536 392 HOH HOH . I 5 HOH A 37 537 393 HOH HOH . I 5 HOH A 38 538 394 HOH HOH . I 5 HOH A 39 539 395 HOH HOH . I 5 HOH A 40 540 396 HOH HOH . I 5 HOH A 41 541 397 HOH HOH . I 5 HOH A 42 542 398 HOH HOH . I 5 HOH A 43 543 399 HOH HOH . I 5 HOH A 44 544 400 HOH HOH . I 5 HOH A 45 545 401 HOH HOH . I 5 HOH A 46 546 402 HOH HOH . I 5 HOH A 47 547 403 HOH HOH . I 5 HOH A 48 548 404 HOH HOH . I 5 HOH A 49 549 405 HOH HOH . I 5 HOH A 50 550 406 HOH HOH . I 5 HOH A 51 551 407 HOH HOH . I 5 HOH A 52 552 408 HOH HOH . I 5 HOH A 53 553 409 HOH HOH . I 5 HOH A 54 554 410 HOH HOH . I 5 HOH A 55 555 411 HOH HOH . I 5 HOH A 56 556 412 HOH HOH . I 5 HOH A 57 557 413 HOH HOH . I 5 HOH A 58 558 414 HOH HOH . I 5 HOH A 59 559 415 HOH HOH . I 5 HOH A 60 560 416 HOH HOH . I 5 HOH A 61 561 417 HOH HOH . I 5 HOH A 62 562 418 HOH HOH . I 5 HOH A 63 563 419 HOH HOH . I 5 HOH A 64 564 420 HOH HOH . I 5 HOH A 65 565 421 HOH HOH . I 5 HOH A 66 566 422 HOH HOH . I 5 HOH A 67 567 423 HOH HOH . I 5 HOH A 68 568 424 HOH HOH . I 5 HOH A 69 569 425 HOH HOH . I 5 HOH A 70 570 426 HOH HOH . I 5 HOH A 71 571 427 HOH HOH . I 5 HOH A 72 572 428 HOH HOH . I 5 HOH A 73 573 429 HOH HOH . I 5 HOH A 74 574 430 HOH HOH . I 5 HOH A 75 575 431 HOH HOH . I 5 HOH A 76 576 432 HOH HOH . I 5 HOH A 77 577 433 HOH HOH . I 5 HOH A 78 578 434 HOH HOH . I 5 HOH A 79 579 435 HOH HOH . I 5 HOH A 80 580 436 HOH HOH . I 5 HOH A 81 581 437 HOH HOH . I 5 HOH A 82 582 438 HOH HOH . I 5 HOH A 83 583 439 HOH HOH . I 5 HOH A 84 584 440 HOH HOH . I 5 HOH A 85 585 441 HOH HOH . I 5 HOH A 86 586 442 HOH HOH . I 5 HOH A 87 587 443 HOH HOH . I 5 HOH A 88 588 444 HOH HOH . I 5 HOH A 89 589 445 HOH HOH . I 5 HOH A 90 590 446 HOH HOH . I 5 HOH A 91 591 447 HOH HOH . I 5 HOH A 92 592 448 HOH HOH . I 5 HOH A 93 593 449 HOH HOH . I 5 HOH A 94 594 450 HOH HOH . I 5 HOH A 95 595 451 HOH HOH . I 5 HOH A 96 596 452 HOH HOH . I 5 HOH A 97 597 453 HOH HOH . I 5 HOH A 98 598 454 HOH HOH . I 5 HOH A 99 599 455 HOH HOH . J 5 HOH B 1 501 373 HOH HOH . J 5 HOH B 2 502 356 HOH HOH . J 5 HOH B 3 503 357 HOH HOH . J 5 HOH B 4 504 358 HOH HOH . J 5 HOH B 5 505 359 HOH HOH . J 5 HOH B 6 506 360 HOH HOH . J 5 HOH B 7 507 361 HOH HOH . J 5 HOH B 8 508 362 HOH HOH . J 5 HOH B 9 509 363 HOH HOH . J 5 HOH B 10 510 364 HOH HOH . J 5 HOH B 11 511 365 HOH HOH . J 5 HOH B 12 512 366 HOH HOH . J 5 HOH B 13 513 367 HOH HOH . J 5 HOH B 14 514 368 HOH HOH . J 5 HOH B 15 515 369 HOH HOH . J 5 HOH B 16 516 370 HOH HOH . J 5 HOH B 17 517 371 HOH HOH . J 5 HOH B 18 518 372 HOH HOH . J 5 HOH B 19 519 373 HOH HOH . J 5 HOH B 20 520 374 HOH HOH . J 5 HOH B 21 521 375 HOH HOH . J 5 HOH B 22 522 376 HOH HOH . J 5 HOH B 23 523 377 HOH HOH . J 5 HOH B 24 524 378 HOH HOH . J 5 HOH B 25 525 379 HOH HOH . J 5 HOH B 26 526 380 HOH HOH . J 5 HOH B 27 527 381 HOH HOH . J 5 HOH B 28 528 382 HOH HOH . J 5 HOH B 29 529 383 HOH HOH . J 5 HOH B 30 530 384 HOH HOH . J 5 HOH B 31 531 385 HOH HOH . J 5 HOH B 32 532 386 HOH HOH . J 5 HOH B 33 533 387 HOH HOH . J 5 HOH B 34 534 388 HOH HOH . J 5 HOH B 35 535 389 HOH HOH . J 5 HOH B 36 536 390 HOH HOH . J 5 HOH B 37 537 391 HOH HOH . J 5 HOH B 38 538 392 HOH HOH . J 5 HOH B 39 539 393 HOH HOH . J 5 HOH B 40 540 394 HOH HOH . J 5 HOH B 41 541 395 HOH HOH . J 5 HOH B 42 542 396 HOH HOH . J 5 HOH B 43 543 397 HOH HOH . J 5 HOH B 44 544 398 HOH HOH . J 5 HOH B 45 545 399 HOH HOH . J 5 HOH B 46 546 400 HOH HOH . J 5 HOH B 47 547 401 HOH HOH . J 5 HOH B 48 548 402 HOH HOH . J 5 HOH B 49 549 403 HOH HOH . J 5 HOH B 50 550 404 HOH HOH . J 5 HOH B 51 551 405 HOH HOH . J 5 HOH B 52 552 406 HOH HOH . J 5 HOH B 53 553 407 HOH HOH . J 5 HOH B 54 554 408 HOH HOH . J 5 HOH B 55 555 409 HOH HOH . J 5 HOH B 56 556 410 HOH HOH . J 5 HOH B 57 557 411 HOH HOH . J 5 HOH B 58 558 412 HOH HOH . J 5 HOH B 59 559 413 HOH HOH . J 5 HOH B 60 560 414 HOH HOH . J 5 HOH B 61 561 415 HOH HOH . J 5 HOH B 62 562 416 HOH HOH . J 5 HOH B 63 563 417 HOH HOH . J 5 HOH B 64 564 418 HOH HOH . J 5 HOH B 65 565 419 HOH HOH . J 5 HOH B 66 566 420 HOH HOH . J 5 HOH B 67 567 421 HOH HOH . J 5 HOH B 68 568 422 HOH HOH . J 5 HOH B 69 569 423 HOH HOH . J 5 HOH B 70 570 424 HOH HOH . J 5 HOH B 71 571 425 HOH HOH . J 5 HOH B 72 572 426 HOH HOH . J 5 HOH B 73 573 427 HOH HOH . J 5 HOH B 74 574 428 HOH HOH . J 5 HOH B 75 575 429 HOH HOH . J 5 HOH B 76 576 430 HOH HOH . J 5 HOH B 77 577 431 HOH HOH . J 5 HOH B 78 578 432 HOH HOH . J 5 HOH B 79 579 433 HOH HOH . J 5 HOH B 80 580 434 HOH HOH . J 5 HOH B 81 581 435 HOH HOH . J 5 HOH B 82 582 436 HOH HOH . J 5 HOH B 83 583 437 HOH HOH . J 5 HOH B 84 584 438 HOH HOH . J 5 HOH B 85 585 439 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . G 3 19.55 -25.351 -36.594 1 83.77 ? P AMP 402 B 1 HETATM 2 O O1P AMP . . . G 3 20.615 -24.797 -35.628 1 83.74 ? O1P AMP 402 B 1 HETATM 3 O O2P AMP . . . G 3 19.963 -26.232 -37.796 1 83.27 ? O2P AMP 402 B 1 HETATM 4 O O3P AMP . . . G 3 18.857 -24.132 -37.191 1 84.26 ? O3P AMP 402 B 1 HETATM 5 O O5' AMP . . . G 3 18.434 -26.11 -35.749 1 79.78 ? O5' AMP 402 B 1 HETATM 6 C C5' AMP . . . G 3 18.356 -27.528 -35.743 1 79.49 ? C5' AMP 402 B 1 HETATM 7 C C4' AMP . . . G 3 16.922 -27.992 -35.728 1 79.42 ? C4' AMP 402 B 1 HETATM 8 O O4' AMP . . . G 3 16.11 -27.028 -35.008 1 79.69 ? O4' AMP 402 B 1 HETATM 9 C C3' AMP . . . G 3 16.249 -28.106 -37.088 1 79.28 ? C3' AMP 402 B 1 HETATM 10 O O3' AMP . . . G 3 16.541 -29.324 -37.751 1 78.68 ? O3' AMP 402 B 1 HETATM 11 C C2' AMP . . . G 3 14.775 -27.933 -36.749 1 80 ? C2' AMP 402 B 1 HETATM 12 O O2' AMP . . . G 3 14.238 -29.136 -36.219 1 79.86 ? O2' AMP 402 B 1 HETATM 13 C C1' AMP . . . G 3 14.846 -26.901 -35.625 1 80.73 ? C1' AMP 402 B 1 HETATM 14 N N9 AMP . . . G 3 14.706 -25.52 -36.126 1 82.76 ? N9 AMP 402 B 1 HETATM 15 C C8 AMP . . . G 3 15.511 -24.474 -35.861 1 83.17 ? C8 AMP 402 B 1 HETATM 16 N N7 AMP . . . G 3 15.041 -23.389 -36.504 1 83.52 ? N7 AMP 402 B 1 HETATM 17 C C5 AMP . . . G 3 13.929 -23.742 -37.182 1 84.32 ? C5 AMP 402 B 1 HETATM 18 C C6 AMP . . . G 3 13.055 -23.051 -37.995 1 85.34 ? C6 AMP 402 B 1 HETATM 19 N N6 AMP . . . G 3 13.254 -21.699 -38.244 1 85.18 ? N6 AMP 402 B 1 HETATM 20 N N1 AMP . . . G 3 12.014 -23.694 -38.541 1 86.11 ? N1 AMP 402 B 1 HETATM 21 C C2 AMP . . . G 3 11.837 -24.997 -38.29 1 85.82 ? C2 AMP 402 B 1 HETATM 22 N N3 AMP . . . G 3 12.657 -25.694 -37.513 1 85.09 ? N3 AMP 402 B 1 HETATM 23 C C4 AMP . . . G 3 13.715 -25.103 -36.941 1 84.09 ? C4 AMP 402 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #