data_3UR9 # _model_server_result.job_id OTo3rhmtynfk2cMK-qzooQ _model_server_result.datetime_utc '2024-11-08 18:49:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ur9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 3UR9 # _exptl.entry_id 3UR9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 485.551 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UR9 _cell.length_a 37.649 _cell.length_b 66.865 _cell.length_c 125.109 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UR9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 146 A CYS 139 1_555 E C21 K36 . A K36 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 B SG CYS 146 B CYS 139 1_555 H C21 K36 . B K36 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.799 ? # _chem_comp.formula 'C21 H31 N3 O8 S' _chem_comp.formula_weight 485.551 _chem_comp.id K36 _chem_comp.mon_nstd_flag . _chem_comp.name '(1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms GC376 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C21 K36 sing 173 n n C21 C20 K36 sing 174 n n C20 C24 K36 sing 175 n n C20 N19 K36 sing 176 n n C24 C25 K36 sing 177 n n C26 C27 K36 sing 178 n n C26 C25 K36 sing 179 n n C27 N28 K36 sing 180 n n O18 C17 K36 doub 181 n n N19 C17 K36 sing 182 n n C25 C29 K36 sing 183 n n C29 N28 K36 sing 184 n n C29 O30 K36 doub 185 n n C17 C12 K36 sing 186 n n C13 C12 K36 sing 187 n n C13 C14 K36 sing 188 n n C12 N11 K36 sing 189 n n C15 C14 K36 sing 190 n n C14 C16 K36 sing 191 n n N11 C9 K36 sing 192 n n O10 C9 K36 doub 193 n n C9 O8 K36 sing 194 n n O8 C7 K36 sing 195 n n C7 H1 K36 sing 196 n n C7 H2 K36 sing 197 n n N11 H4 K36 sing 198 n n C12 H5 K36 sing 199 n n C13 H6 K36 sing 200 n n C13 H7 K36 sing 201 n n C14 H8 K36 sing 202 n n C15 H9 K36 sing 203 n n C15 H10 K36 sing 204 n n C15 H11 K36 sing 205 n n C16 H12 K36 sing 206 n n C16 H13 K36 sing 207 n n C16 H14 K36 sing 208 n n N19 H15 K36 sing 209 n n C20 H16 K36 sing 210 n n C21 H17 K36 sing 211 n n O22 H19 K36 sing 212 n n C24 H20 K36 sing 213 n n C24 H21 K36 sing 214 n n C25 H22 K36 sing 215 n n C26 H23 K36 sing 216 n n C26 H24 K36 sing 217 n n C27 H25 K36 sing 218 n n C27 H26 K36 sing 219 n n N28 H27 K36 sing 220 n n C7 C1 K36 sing 221 n n C1 C2 K36 sing 222 n y C2 C3 K36 doub 223 n y C3 C4 K36 sing 224 n y C4 C5 K36 doub 225 n y C5 C6 K36 sing 226 n y C6 C1 K36 doub 227 n y C21 S1 K36 sing 228 n n S1 O1 K36 doub 229 n n S1 O2 K36 doub 230 n n S1 O3 K36 sing 231 n n C2 H3 K36 sing 232 n n C3 H18 K36 sing 233 n n C4 H28 K36 sing 234 n n C5 H29 K36 sing 235 n n C6 H30 K36 sing 236 n n O3 H31 K36 sing 237 n n # _atom_sites.entry_id 3UR9 _atom_sites.fract_transf_matrix[1][1] 0.026561 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014956 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL A 1 201 1 CL CL . D 2 CL A 1 202 4 CL CL . E 3 K36 A 1 203 1 K36 K36 . F 2 CL B 1 201 2 CL CL . G 2 CL B 1 202 3 CL CL . H 3 K36 B 1 203 2 K36 K36 . I 4 HOH A 1 301 1 HOH HOH . I 4 HOH A 2 302 2 HOH HOH . I 4 HOH A 3 303 3 HOH HOH . I 4 HOH A 4 304 5 HOH HOH . I 4 HOH A 5 305 8 HOH HOH . I 4 HOH A 6 306 9 HOH HOH . I 4 HOH A 7 307 10 HOH HOH . I 4 HOH A 8 308 15 HOH HOH . I 4 HOH A 9 309 19 HOH HOH . I 4 HOH A 10 310 20 HOH HOH . I 4 HOH A 11 311 21 HOH HOH . I 4 HOH A 12 312 23 HOH HOH . I 4 HOH A 13 313 24 HOH HOH . I 4 HOH A 14 314 28 HOH HOH . I 4 HOH A 15 315 29 HOH HOH . I 4 HOH A 16 316 31 HOH HOH . I 4 HOH A 17 317 32 HOH HOH . I 4 HOH A 18 318 33 HOH HOH . I 4 HOH A 19 319 34 HOH HOH . I 4 HOH A 20 320 37 HOH HOH . I 4 HOH A 21 321 38 HOH HOH . I 4 HOH A 22 322 39 HOH HOH . I 4 HOH A 23 323 45 HOH HOH . I 4 HOH A 24 324 46 HOH HOH . I 4 HOH A 25 325 47 HOH HOH . I 4 HOH A 26 326 49 HOH HOH . I 4 HOH A 27 327 50 HOH HOH . I 4 HOH A 28 328 51 HOH HOH . I 4 HOH A 29 329 52 HOH HOH . I 4 HOH A 30 330 53 HOH HOH . I 4 HOH A 31 331 56 HOH HOH . I 4 HOH A 32 332 59 HOH HOH . I 4 HOH A 33 333 62 HOH HOH . I 4 HOH A 34 334 63 HOH HOH . I 4 HOH A 35 335 64 HOH HOH . I 4 HOH A 36 336 66 HOH HOH . I 4 HOH A 37 337 67 HOH HOH . I 4 HOH A 38 338 68 HOH HOH . I 4 HOH A 39 339 69 HOH HOH . I 4 HOH A 40 340 70 HOH HOH . I 4 HOH A 41 341 71 HOH HOH . I 4 HOH A 42 342 73 HOH HOH . I 4 HOH A 43 343 76 HOH HOH . I 4 HOH A 44 344 81 HOH HOH . I 4 HOH A 45 345 82 HOH HOH . I 4 HOH A 46 346 83 HOH HOH . I 4 HOH A 47 347 86 HOH HOH . I 4 HOH A 48 348 88 HOH HOH . I 4 HOH A 49 349 91 HOH HOH . I 4 HOH A 50 350 92 HOH HOH . I 4 HOH A 51 351 94 HOH HOH . I 4 HOH A 52 352 98 HOH HOH . I 4 HOH A 53 353 100 HOH HOH . I 4 HOH A 54 354 101 HOH HOH . I 4 HOH A 55 355 102 HOH HOH . I 4 HOH A 56 356 107 HOH HOH . I 4 HOH A 57 357 108 HOH HOH . I 4 HOH A 58 358 110 HOH HOH . I 4 HOH A 59 359 112 HOH HOH . I 4 HOH A 60 360 113 HOH HOH . I 4 HOH A 61 361 120 HOH HOH . I 4 HOH A 62 362 126 HOH HOH . I 4 HOH A 63 363 127 HOH HOH . I 4 HOH A 64 364 130 HOH HOH . I 4 HOH A 65 365 132 HOH HOH . I 4 HOH A 66 366 134 HOH HOH . I 4 HOH A 67 367 135 HOH HOH . I 4 HOH A 68 368 136 HOH HOH . I 4 HOH A 69 369 140 HOH HOH . I 4 HOH A 70 370 142 HOH HOH . I 4 HOH A 71 371 145 HOH HOH . I 4 HOH A 72 372 149 HOH HOH . I 4 HOH A 73 373 151 HOH HOH . I 4 HOH A 74 374 153 HOH HOH . I 4 HOH A 75 375 156 HOH HOH . I 4 HOH A 76 376 116 HOH HOH . J 4 HOH B 1 301 4 HOH HOH . J 4 HOH B 2 302 6 HOH HOH . J 4 HOH B 3 303 7 HOH HOH . J 4 HOH B 4 304 11 HOH HOH . J 4 HOH B 5 305 12 HOH HOH . J 4 HOH B 6 306 13 HOH HOH . J 4 HOH B 7 307 14 HOH HOH . J 4 HOH B 8 308 16 HOH HOH . J 4 HOH B 9 309 17 HOH HOH . J 4 HOH B 10 310 18 HOH HOH . J 4 HOH B 11 311 22 HOH HOH . J 4 HOH B 12 312 25 HOH HOH . J 4 HOH B 13 313 26 HOH HOH . J 4 HOH B 14 314 27 HOH HOH . J 4 HOH B 15 315 30 HOH HOH . J 4 HOH B 16 316 35 HOH HOH . J 4 HOH B 17 317 36 HOH HOH . J 4 HOH B 18 318 41 HOH HOH . J 4 HOH B 19 319 42 HOH HOH . J 4 HOH B 20 320 43 HOH HOH . J 4 HOH B 21 321 48 HOH HOH . J 4 HOH B 22 322 54 HOH HOH . J 4 HOH B 23 323 55 HOH HOH . J 4 HOH B 24 324 57 HOH HOH . J 4 HOH B 25 325 58 HOH HOH . J 4 HOH B 26 326 60 HOH HOH . J 4 HOH B 27 327 61 HOH HOH . J 4 HOH B 28 328 65 HOH HOH . J 4 HOH B 29 329 72 HOH HOH . J 4 HOH B 30 330 74 HOH HOH . J 4 HOH B 31 331 75 HOH HOH . J 4 HOH B 32 332 77 HOH HOH . J 4 HOH B 33 333 78 HOH HOH . J 4 HOH B 34 334 79 HOH HOH . J 4 HOH B 35 335 80 HOH HOH . J 4 HOH B 36 336 84 HOH HOH . J 4 HOH B 37 337 85 HOH HOH . J 4 HOH B 38 338 87 HOH HOH . J 4 HOH B 39 339 89 HOH HOH . J 4 HOH B 40 340 90 HOH HOH . J 4 HOH B 41 341 93 HOH HOH . J 4 HOH B 42 342 95 HOH HOH . J 4 HOH B 43 343 96 HOH HOH . J 4 HOH B 44 344 97 HOH HOH . J 4 HOH B 45 345 99 HOH HOH . J 4 HOH B 46 346 104 HOH HOH . J 4 HOH B 47 347 105 HOH HOH . J 4 HOH B 48 348 106 HOH HOH . J 4 HOH B 49 349 109 HOH HOH . J 4 HOH B 50 350 111 HOH HOH . J 4 HOH B 51 351 114 HOH HOH . J 4 HOH B 52 352 115 HOH HOH . J 4 HOH B 53 353 117 HOH HOH . J 4 HOH B 54 354 118 HOH HOH . J 4 HOH B 55 355 119 HOH HOH . J 4 HOH B 56 356 121 HOH HOH . J 4 HOH B 57 357 122 HOH HOH . J 4 HOH B 58 358 123 HOH HOH . J 4 HOH B 59 359 124 HOH HOH . J 4 HOH B 60 360 125 HOH HOH . J 4 HOH B 61 361 128 HOH HOH . J 4 HOH B 62 362 129 HOH HOH . J 4 HOH B 63 363 131 HOH HOH . J 4 HOH B 64 364 133 HOH HOH . J 4 HOH B 65 365 137 HOH HOH . J 4 HOH B 66 366 138 HOH HOH . J 4 HOH B 67 367 139 HOH HOH . J 4 HOH B 68 368 141 HOH HOH . J 4 HOH B 69 369 143 HOH HOH . J 4 HOH B 70 370 144 HOH HOH . J 4 HOH B 71 371 146 HOH HOH . J 4 HOH B 72 372 147 HOH HOH . J 4 HOH B 73 373 148 HOH HOH . J 4 HOH B 74 374 150 HOH HOH . J 4 HOH B 75 375 152 HOH HOH . J 4 HOH B 76 376 154 HOH HOH . J 4 HOH B 77 377 155 HOH HOH . J 4 HOH B 78 378 157 HOH HOH . J 4 HOH B 79 379 158 HOH HOH . J 4 HOH B 80 380 40 HOH HOH . J 4 HOH B 81 381 44 HOH HOH . J 4 HOH B 82 382 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 K36 . . . E 3 -23.018 -20.678 36.18 1 38.26 ? C7 K36 203 A 1 HETATM 2 O O8 K36 . . . E 3 -22.329 -21.592 35.326 1 38.85 ? O8 K36 203 A 1 HETATM 3 C C9 K36 . . . E 3 -21.243 -21.116 34.504 1 34.6 ? C9 K36 203 A 1 HETATM 4 O O10 K36 . . . E 3 -21.103 -19.899 34.36 1 29.02 ? O10 K36 203 A 1 HETATM 5 N N11 K36 . . . E 3 -20.424 -22.046 33.922 1 26.9 ? N11 K36 203 A 1 HETATM 6 C C12 K36 . . . E 3 -19.269 -21.633 33.105 1 20.38 ? C12 K36 203 A 1 HETATM 7 C C17 K36 . . . E 3 -19.746 -21.013 31.826 1 28.23 ? C17 K36 203 A 1 HETATM 8 O O18 K36 . . . E 3 -20.735 -21.452 31.246 1 29.8 ? O18 K36 203 A 1 HETATM 9 C C13 K36 . . . E 3 -18.392 -22.818 32.703 1 25.83 ? C13 K36 203 A 1 HETATM 10 C C14 K36 . . . E 3 -17.83 -23.56 33.906 1 27.57 ? C14 K36 203 A 1 HETATM 11 C C15 K36 . . . E 3 -17.183 -24.851 33.422 1 32.45 ? C15 K36 203 A 1 HETATM 12 C C16 K36 . . . E 3 -16.819 -22.722 34.661 1 27.2 ? C16 K36 203 A 1 HETATM 13 N N19 K36 . . . E 3 -19.037 -19.927 31.324 1 24.26 ? N19 K36 203 A 1 HETATM 14 C C20 K36 . . . E 3 -19.446 -19.211 30.116 1 19.26 ? C20 K36 203 A 1 HETATM 15 C C21 K36 . . . E 3 -18.249 -19.027 29.166 1 23.62 ? C21 K36 203 A 1 HETATM 16 O O22 K36 . . . E 3 -17.814 -20.286 28.645 1 26.33 ? O22 K36 203 A 1 HETATM 17 C C24 K36 . . . E 3 -20.019 -17.842 30.427 1 22.53 ? C24 K36 203 A 1 HETATM 18 C C25 K36 . . . E 3 -21.212 -17.905 31.367 1 20.93 ? C25 K36 203 A 1 HETATM 19 C C26 K36 . . . E 3 -22.415 -18.623 30.74 1 24.32 ? C26 K36 203 A 1 HETATM 20 C C27 K36 . . . E 3 -23.628 -17.836 31.229 1 30 ? C27 K36 203 A 1 HETATM 21 N N28 K36 . . . E 3 -23.16 -16.485 31.625 1 27.79 ? N28 K36 203 A 1 HETATM 22 C C29 K36 . . . E 3 -21.783 -16.549 31.574 1 24.45 ? C29 K36 203 A 1 HETATM 23 O O30 K36 . . . E 3 -21.107 -15.543 31.697 1 23.43 ? O30 K36 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 23 #