data_3URF # _model_server_result.job_id g5qjG9TDRnEYZfd3gQRLJw _model_server_result.datetime_utc '2024-12-21 19:01:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3urf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 3URF # _exptl.entry_id 3URF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3URF _cell.length_a 144.8 _cell.length_b 144.8 _cell.length_c 144.8 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3URF _symmetry.cell_setting ? _symmetry.Int_Tables_number 213 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 3 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 20 Z CYS 20 1_555 B SG CYS 33 Z CYS 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 23 Z CYS 23 1_555 B SG CYS 41 Z CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf3 B SG CYS 44 Z CYS 44 1_555 B SG CYS 59 Z CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 B SG CYS 62 Z CYS 62 1_555 B SG CYS 76 Z CYS 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 66 Z CYS 66 1_555 B SG CYS 84 Z CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 B SG CYS 86 Z CYS 86 1_555 B SG CYS 97 Z CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf7 B SG CYS 103 Z CYS 103 1_555 B SG CYS 121 Z CYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf8 B SG CYS 124 Z CYS 124 1_555 B SG CYS 139 Z CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf9 B SG CYS 145 Z CYS 145 1_555 B SG CYS 164 Z CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 B ND2 ASN 157 Z ASN 157 1_555 C C1 NAG . Z NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3URF _atom_sites.fract_transf_matrix[1][1] 0.006906 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006906 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006906 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG Z 1 201 100 NAG NAG . D 4 HOH A 1 401 1 HOH HOH . D 4 HOH A 2 402 2 HOH HOH . D 4 HOH A 3 403 3 HOH HOH . D 4 HOH A 4 404 4 HOH HOH . D 4 HOH A 5 405 8 HOH HOH . D 4 HOH A 6 406 9 HOH HOH . D 4 HOH A 7 407 10 HOH HOH . D 4 HOH A 8 408 11 HOH HOH . D 4 HOH A 9 409 12 HOH HOH . D 4 HOH A 10 410 13 HOH HOH . D 4 HOH A 11 411 14 HOH HOH . D 4 HOH A 12 412 18 HOH HOH . D 4 HOH A 13 413 19 HOH HOH . D 4 HOH A 14 414 21 HOH HOH . D 4 HOH A 15 415 22 HOH HOH . D 4 HOH A 16 416 23 HOH HOH . D 4 HOH A 17 417 24 HOH HOH . D 4 HOH A 18 418 28 HOH HOH . D 4 HOH A 19 419 30 HOH HOH . D 4 HOH A 20 420 31 HOH HOH . D 4 HOH A 21 421 32 HOH HOH . D 4 HOH A 22 422 33 HOH HOH . D 4 HOH A 23 423 34 HOH HOH . D 4 HOH A 24 424 35 HOH HOH . E 4 HOH Z 1 301 5 HOH HOH . E 4 HOH Z 2 302 6 HOH HOH . E 4 HOH Z 3 303 7 HOH HOH . E 4 HOH Z 4 304 15 HOH HOH . E 4 HOH Z 5 305 16 HOH HOH . E 4 HOH Z 6 306 17 HOH HOH . E 4 HOH Z 7 307 20 HOH HOH . E 4 HOH Z 8 308 25 HOH HOH . E 4 HOH Z 9 309 26 HOH HOH . E 4 HOH Z 10 310 27 HOH HOH . E 4 HOH Z 11 311 29 HOH HOH . E 4 HOH Z 12 312 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . C 3 -24.695 -37.252 10.367 1 114.68 ? C1 NAG 201 Z 1 HETATM 2 C C2 NAG . . . C 3 -23.85 -37.451 9.097 1 124.9 ? C2 NAG 201 Z 1 HETATM 3 C C3 NAG . . . C 3 -24.437 -36.801 7.832 1 122.69 ? C3 NAG 201 Z 1 HETATM 4 C C4 NAG . . . C 3 -25.922 -37.15 7.696 1 117.84 ? C4 NAG 201 Z 1 HETATM 5 C C5 NAG . . . C 3 -26.642 -36.804 9.004 1 123.66 ? C5 NAG 201 Z 1 HETATM 6 C C6 NAG . . . C 3 -28.113 -37.196 8.934 1 125.32 ? C6 NAG 201 Z 1 HETATM 7 C C7 NAG . . . C 3 -21.437 -37.645 8.854 1 139.71 ? C7 NAG 201 Z 1 HETATM 8 C C8 NAG . . . C 3 -20.336 -36.825 8.252 1 140.46 ? C8 NAG 201 Z 1 HETATM 9 N N2 NAG . . . C 3 -22.492 -36.975 9.326 1 134.03 ? N2 NAG 201 Z 1 HETATM 10 O O3 NAG . . . C 3 -23.713 -37.24 6.696 1 121.57 ? O3 NAG 201 Z 1 HETATM 11 O O4 NAG . . . C 3 -26.527 -36.488 6.586 1 95.11 ? O4 NAG 201 Z 1 HETATM 12 O O5 NAG . . . C 3 -26.072 -37.47 10.117 1 118.75 ? O5 NAG 201 Z 1 HETATM 13 O O6 NAG . . . C 3 -28.204 -38.581 9.185 1 124.04 ? O6 NAG 201 Z 1 HETATM 14 O O7 NAG . . . C 3 -21.347 -38.872 8.891 1 137.59 ? O7 NAG 201 Z 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #