data_3URR # _model_server_result.job_id -hhJHIMpcOjbmKDeH05TjQ _model_server_result.datetime_utc '2024-11-22 18:59:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3urr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":152}' # _entry.id 3URR # _exptl.entry_id 3URR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.89 _cell.angle_gamma 90 _cell.entry_id 3URR _cell.length_a 36.975 _cell.length_b 102.267 _cell.length_c 37.477 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3URR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3URR _atom_sites.fract_transf_matrix[1][1] 0.027045 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001368 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 152 1 GOL GOL . D 2 GOL A 1 153 2 GOL GOL . E 3 PO4 A 1 154 1 PO4 PO4 . F 2 GOL B 1 152 3 GOL GOL . G 4 HOH A 1 155 155 HOH HOH . G 4 HOH A 2 156 2 HOH HOH . G 4 HOH A 3 157 5 HOH HOH . G 4 HOH A 4 158 158 HOH HOH . G 4 HOH A 5 159 6 HOH HOH . G 4 HOH A 6 160 160 HOH HOH . G 4 HOH A 7 161 7 HOH HOH . G 4 HOH A 8 162 8 HOH HOH . G 4 HOH A 9 163 163 HOH HOH . G 4 HOH A 10 164 10 HOH HOH . G 4 HOH A 11 165 165 HOH HOH . G 4 HOH A 12 166 166 HOH HOH . G 4 HOH A 13 167 11 HOH HOH . G 4 HOH A 14 168 17 HOH HOH . G 4 HOH A 15 169 22 HOH HOH . G 4 HOH A 16 170 170 HOH HOH . G 4 HOH A 17 171 23 HOH HOH . G 4 HOH A 18 172 24 HOH HOH . G 4 HOH A 19 173 27 HOH HOH . G 4 HOH A 20 174 174 HOH HOH . G 4 HOH A 21 175 175 HOH HOH . G 4 HOH A 22 176 28 HOH HOH . G 4 HOH A 23 177 33 HOH HOH . G 4 HOH A 24 178 34 HOH HOH . G 4 HOH A 25 179 179 HOH HOH . G 4 HOH A 26 180 36 HOH HOH . G 4 HOH A 27 181 38 HOH HOH . G 4 HOH A 28 182 39 HOH HOH . G 4 HOH A 29 183 40 HOH HOH . G 4 HOH A 30 184 184 HOH HOH . G 4 HOH A 31 185 43 HOH HOH . G 4 HOH A 32 186 186 HOH HOH . G 4 HOH A 33 187 187 HOH HOH . G 4 HOH A 34 188 188 HOH HOH . G 4 HOH A 35 189 189 HOH HOH . G 4 HOH A 36 190 190 HOH HOH . G 4 HOH A 37 191 47 HOH HOH . G 4 HOH A 38 192 48 HOH HOH . G 4 HOH A 39 193 50 HOH HOH . G 4 HOH A 40 194 51 HOH HOH . G 4 HOH A 41 195 53 HOH HOH . G 4 HOH A 42 196 55 HOH HOH . G 4 HOH A 43 197 197 HOH HOH . G 4 HOH A 44 198 198 HOH HOH . G 4 HOH A 45 199 57 HOH HOH . G 4 HOH A 46 200 60 HOH HOH . G 4 HOH A 47 201 201 HOH HOH . G 4 HOH A 48 202 61 HOH HOH . G 4 HOH A 49 203 62 HOH HOH . G 4 HOH A 50 204 64 HOH HOH . G 4 HOH A 51 205 205 HOH HOH . G 4 HOH A 52 206 66 HOH HOH . G 4 HOH A 53 207 67 HOH HOH . G 4 HOH A 54 208 208 HOH HOH . G 4 HOH A 55 209 68 HOH HOH . G 4 HOH A 56 210 73 HOH HOH . G 4 HOH A 57 211 75 HOH HOH . G 4 HOH A 58 212 212 HOH HOH . G 4 HOH A 59 213 213 HOH HOH . G 4 HOH A 60 214 79 HOH HOH . G 4 HOH A 61 215 81 HOH HOH . G 4 HOH A 62 216 216 HOH HOH . G 4 HOH A 63 217 82 HOH HOH . G 4 HOH A 64 218 83 HOH HOH . G 4 HOH A 65 219 219 HOH HOH . G 4 HOH A 66 220 85 HOH HOH . G 4 HOH A 67 221 88 HOH HOH . G 4 HOH A 68 222 90 HOH HOH . G 4 HOH A 69 223 91 HOH HOH . G 4 HOH A 70 224 95 HOH HOH . G 4 HOH A 71 225 99 HOH HOH . G 4 HOH A 72 226 101 HOH HOH . G 4 HOH A 73 227 227 HOH HOH . G 4 HOH A 74 228 105 HOH HOH . G 4 HOH A 75 229 106 HOH HOH . G 4 HOH A 76 230 107 HOH HOH . G 4 HOH A 77 231 110 HOH HOH . G 4 HOH A 78 232 113 HOH HOH . G 4 HOH A 79 233 114 HOH HOH . G 4 HOH A 80 234 234 HOH HOH . G 4 HOH A 81 235 235 HOH HOH . G 4 HOH A 82 236 236 HOH HOH . G 4 HOH A 83 237 116 HOH HOH . G 4 HOH A 84 238 121 HOH HOH . G 4 HOH A 85 239 239 HOH HOH . G 4 HOH A 86 240 122 HOH HOH . G 4 HOH A 87 241 124 HOH HOH . G 4 HOH A 88 242 128 HOH HOH . G 4 HOH A 89 243 129 HOH HOH . G 4 HOH A 90 244 130 HOH HOH . G 4 HOH A 91 245 132 HOH HOH . G 4 HOH A 92 246 246 HOH HOH . G 4 HOH A 93 247 134 HOH HOH . G 4 HOH A 94 248 135 HOH HOH . G 4 HOH A 95 249 140 HOH HOH . G 4 HOH A 96 250 142 HOH HOH . G 4 HOH A 97 251 152 HOH HOH . G 4 HOH A 98 252 153 HOH HOH . G 4 HOH A 99 253 253 HOH HOH . G 4 HOH A 100 257 257 HOH HOH . G 4 HOH A 101 259 259 HOH HOH . G 4 HOH A 102 260 260 HOH HOH . G 4 HOH A 103 263 263 HOH HOH . G 4 HOH A 104 264 264 HOH HOH . G 4 HOH A 105 265 265 HOH HOH . G 4 HOH A 106 267 267 HOH HOH . G 4 HOH A 107 268 268 HOH HOH . G 4 HOH A 108 270 270 HOH HOH . G 4 HOH A 109 271 271 HOH HOH . G 4 HOH A 110 273 273 HOH HOH . G 4 HOH A 111 274 274 HOH HOH . G 4 HOH A 112 275 275 HOH HOH . G 4 HOH A 113 277 277 HOH HOH . G 4 HOH A 114 280 280 HOH HOH . G 4 HOH A 115 283 283 HOH HOH . G 4 HOH A 116 285 285 HOH HOH . G 4 HOH A 117 287 287 HOH HOH . G 4 HOH A 118 288 288 HOH HOH . G 4 HOH A 119 289 289 HOH HOH . G 4 HOH A 120 314 314 HOH HOH . G 4 HOH A 121 316 316 HOH HOH . G 4 HOH A 122 317 317 HOH HOH . G 4 HOH A 123 322 322 HOH HOH . G 4 HOH A 124 325 325 HOH HOH . G 4 HOH A 125 328 328 HOH HOH . G 4 HOH A 126 331 331 HOH HOH . G 4 HOH A 127 332 332 HOH HOH . G 4 HOH A 128 348 348 HOH HOH . G 4 HOH A 129 349 349 HOH HOH . G 4 HOH A 130 350 350 HOH HOH . G 4 HOH A 131 359 359 HOH HOH . G 4 HOH A 132 362 362 HOH HOH . G 4 HOH A 133 364 364 HOH HOH . G 4 HOH A 134 365 365 HOH HOH . G 4 HOH A 135 366 366 HOH HOH . G 4 HOH A 136 383 383 HOH HOH . G 4 HOH A 137 389 389 HOH HOH . G 4 HOH A 138 391 391 HOH HOH . G 4 HOH A 139 392 392 HOH HOH . G 4 HOH A 140 396 396 HOH HOH . G 4 HOH A 141 397 397 HOH HOH . G 4 HOH A 142 402 402 HOH HOH . G 4 HOH A 143 403 403 HOH HOH . G 4 HOH A 144 404 404 HOH HOH . G 4 HOH A 145 405 405 HOH HOH . G 4 HOH A 146 406 406 HOH HOH . G 4 HOH A 147 419 419 HOH HOH . G 4 HOH A 148 423 423 HOH HOH . G 4 HOH A 149 424 424 HOH HOH . G 4 HOH A 150 425 425 HOH HOH . G 4 HOH A 151 430 430 HOH HOH . G 4 HOH A 152 434 434 HOH HOH . G 4 HOH A 153 440 440 HOH HOH . G 4 HOH A 154 441 441 HOH HOH . G 4 HOH A 155 452 452 HOH HOH . G 4 HOH A 156 456 456 HOH HOH . G 4 HOH A 157 464 464 HOH HOH . G 4 HOH A 158 465 465 HOH HOH . G 4 HOH A 159 467 467 HOH HOH . G 4 HOH A 160 470 470 HOH HOH . G 4 HOH A 161 471 471 HOH HOH . H 4 HOH B 1 153 1 HOH HOH . H 4 HOH B 2 154 154 HOH HOH . H 4 HOH B 3 155 3 HOH HOH . H 4 HOH B 4 156 156 HOH HOH . H 4 HOH B 5 157 157 HOH HOH . H 4 HOH B 6 158 4 HOH HOH . H 4 HOH B 7 159 9 HOH HOH . H 4 HOH B 8 160 18 HOH HOH . H 4 HOH B 9 161 161 HOH HOH . H 4 HOH B 10 162 162 HOH HOH . H 4 HOH B 11 163 21 HOH HOH . H 4 HOH B 12 164 164 HOH HOH . H 4 HOH B 13 165 29 HOH HOH . H 4 HOH B 14 166 31 HOH HOH . H 4 HOH B 15 167 35 HOH HOH . H 4 HOH B 16 168 37 HOH HOH . H 4 HOH B 17 169 169 HOH HOH . H 4 HOH B 18 170 41 HOH HOH . H 4 HOH B 19 171 44 HOH HOH . H 4 HOH B 20 172 45 HOH HOH . H 4 HOH B 21 173 173 HOH HOH . H 4 HOH B 22 174 46 HOH HOH . H 4 HOH B 23 175 49 HOH HOH . H 4 HOH B 24 176 176 HOH HOH . H 4 HOH B 25 177 52 HOH HOH . H 4 HOH B 26 178 54 HOH HOH . H 4 HOH B 27 179 59 HOH HOH . H 4 HOH B 28 180 180 HOH HOH . H 4 HOH B 29 181 63 HOH HOH . H 4 HOH B 30 182 182 HOH HOH . H 4 HOH B 31 183 183 HOH HOH . H 4 HOH B 32 184 65 HOH HOH . H 4 HOH B 33 185 185 HOH HOH . H 4 HOH B 34 186 69 HOH HOH . H 4 HOH B 35 187 71 HOH HOH . H 4 HOH B 36 188 74 HOH HOH . H 4 HOH B 37 189 77 HOH HOH . H 4 HOH B 38 190 80 HOH HOH . H 4 HOH B 39 191 84 HOH HOH . H 4 HOH B 40 192 192 HOH HOH . H 4 HOH B 41 193 193 HOH HOH . H 4 HOH B 42 194 194 HOH HOH . H 4 HOH B 43 195 86 HOH HOH . H 4 HOH B 44 196 196 HOH HOH . H 4 HOH B 45 197 87 HOH HOH . H 4 HOH B 46 198 89 HOH HOH . H 4 HOH B 47 199 199 HOH HOH . H 4 HOH B 48 200 200 HOH HOH . H 4 HOH B 49 201 94 HOH HOH . H 4 HOH B 50 202 96 HOH HOH . H 4 HOH B 51 203 203 HOH HOH . H 4 HOH B 52 204 204 HOH HOH . H 4 HOH B 53 205 97 HOH HOH . H 4 HOH B 54 206 100 HOH HOH . H 4 HOH B 55 207 102 HOH HOH . H 4 HOH B 56 208 103 HOH HOH . H 4 HOH B 57 209 104 HOH HOH . H 4 HOH B 58 210 108 HOH HOH . H 4 HOH B 59 211 211 HOH HOH . H 4 HOH B 60 212 109 HOH HOH . H 4 HOH B 61 213 111 HOH HOH . H 4 HOH B 62 214 115 HOH HOH . H 4 HOH B 63 215 215 HOH HOH . H 4 HOH B 64 216 117 HOH HOH . H 4 HOH B 65 217 217 HOH HOH . H 4 HOH B 66 218 118 HOH HOH . H 4 HOH B 67 219 119 HOH HOH . H 4 HOH B 68 220 120 HOH HOH . H 4 HOH B 69 221 221 HOH HOH . H 4 HOH B 70 222 123 HOH HOH . H 4 HOH B 71 223 223 HOH HOH . H 4 HOH B 72 224 224 HOH HOH . H 4 HOH B 73 225 225 HOH HOH . H 4 HOH B 74 226 226 HOH HOH . H 4 HOH B 75 227 125 HOH HOH . H 4 HOH B 76 228 228 HOH HOH . H 4 HOH B 77 229 229 HOH HOH . H 4 HOH B 78 230 126 HOH HOH . H 4 HOH B 79 231 127 HOH HOH . H 4 HOH B 80 232 136 HOH HOH . H 4 HOH B 81 233 137 HOH HOH . H 4 HOH B 82 234 139 HOH HOH . H 4 HOH B 83 235 143 HOH HOH . H 4 HOH B 84 236 144 HOH HOH . H 4 HOH B 85 237 237 HOH HOH . H 4 HOH B 86 238 147 HOH HOH . H 4 HOH B 87 239 148 HOH HOH . H 4 HOH B 88 240 149 HOH HOH . H 4 HOH B 89 241 150 HOH HOH . H 4 HOH B 90 242 151 HOH HOH . H 4 HOH B 91 244 244 HOH HOH . H 4 HOH B 92 258 258 HOH HOH . H 4 HOH B 93 276 276 HOH HOH . H 4 HOH B 94 282 282 HOH HOH . H 4 HOH B 95 290 290 HOH HOH . H 4 HOH B 96 291 291 HOH HOH . H 4 HOH B 97 293 293 HOH HOH . H 4 HOH B 98 294 294 HOH HOH . H 4 HOH B 99 295 295 HOH HOH . H 4 HOH B 100 299 299 HOH HOH . H 4 HOH B 101 301 301 HOH HOH . H 4 HOH B 102 302 302 HOH HOH . H 4 HOH B 103 306 306 HOH HOH . H 4 HOH B 104 308 308 HOH HOH . H 4 HOH B 105 310 310 HOH HOH . H 4 HOH B 106 311 311 HOH HOH . H 4 HOH B 107 312 312 HOH HOH . H 4 HOH B 108 313 313 HOH HOH . H 4 HOH B 109 321 321 HOH HOH . H 4 HOH B 110 327 327 HOH HOH . H 4 HOH B 111 333 333 HOH HOH . H 4 HOH B 112 334 334 HOH HOH . H 4 HOH B 113 335 335 HOH HOH . H 4 HOH B 114 336 336 HOH HOH . H 4 HOH B 115 337 337 HOH HOH . H 4 HOH B 116 341 341 HOH HOH . H 4 HOH B 117 342 342 HOH HOH . H 4 HOH B 118 343 343 HOH HOH . H 4 HOH B 119 345 345 HOH HOH . H 4 HOH B 120 347 347 HOH HOH . H 4 HOH B 121 369 369 HOH HOH . H 4 HOH B 122 371 371 HOH HOH . H 4 HOH B 123 373 373 HOH HOH . H 4 HOH B 124 374 374 HOH HOH . H 4 HOH B 125 376 376 HOH HOH . H 4 HOH B 126 379 379 HOH HOH . H 4 HOH B 127 395 395 HOH HOH . H 4 HOH B 128 399 399 HOH HOH . H 4 HOH B 129 407 407 HOH HOH . H 4 HOH B 130 409 409 HOH HOH . H 4 HOH B 131 410 410 HOH HOH . H 4 HOH B 132 412 412 HOH HOH . H 4 HOH B 133 413 413 HOH HOH . H 4 HOH B 134 414 414 HOH HOH . H 4 HOH B 135 417 417 HOH HOH . H 4 HOH B 136 420 420 HOH HOH . H 4 HOH B 137 432 432 HOH HOH . H 4 HOH B 138 436 436 HOH HOH . H 4 HOH B 139 437 437 HOH HOH . H 4 HOH B 140 438 438 HOH HOH . H 4 HOH B 141 443 443 HOH HOH . H 4 HOH B 142 446 446 HOH HOH . H 4 HOH B 143 447 447 HOH HOH . H 4 HOH B 144 451 451 HOH HOH . H 4 HOH B 145 458 458 HOH HOH . H 4 HOH B 146 459 459 HOH HOH . H 4 HOH B 147 460 460 HOH HOH . H 4 HOH B 148 461 461 HOH HOH . H 4 HOH B 149 462 462 HOH HOH . H 4 HOH B 150 468 468 HOH HOH . H 4 HOH B 151 469 469 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 3.75 62.871 42.91 1 72.6 ? C1 GOL 152 A 1 HETATM 2 O O1 GOL . . . C 2 2.486 62.246 42.933 1 38.16 ? O1 GOL 152 A 1 HETATM 3 C C2 GOL . . . C 2 3.694 64.324 43.383 1 32.58 ? C2 GOL 152 A 1 HETATM 4 O O2 GOL . . . C 2 4.87 64.626 44.102 1 117.06 ? O2 GOL 152 A 1 HETATM 5 C C3 GOL . . . C 2 2.472 64.617 44.25 1 39.7 ? C3 GOL 152 A 1 HETATM 6 O O3 GOL . . . C 2 2.763 65.736 45.068 1 39.02 ? O3 GOL 152 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 240 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #