data_3USP # _model_server_result.job_id R0bskwQhOZX24Z3iQsei9Q _model_server_result.datetime_utc '2024-11-23 10:51:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3usp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 3USP # _exptl.entry_id 3USP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.15 _cell.angle_gamma 90 _cell.entry_id 3USP _cell.length_a 89.697 _cell.length_b 86.359 _cell.length_c 81.399 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3USP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.976582 0 80.930535 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 A O THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc11 C NA NA . A NA 602 1_555 E OXT LEU . A LEU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3USP _atom_sites.fract_transf_matrix[1][1] 0.011149 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001201 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012356 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA A 1 601 751 NA NA . C 2 NA A 1 602 752 NA NA . D 3 CL A 1 603 753 CL CL . E 4 LEU A 1 604 601 LEU LEU . F 5 05L A 1 605 1 05L 05L . G 5 05L A 1 606 1 05L 05L . H 5 05L A 1 607 1 05L 05L . I 5 05L A 1 608 1 05L 05L . J 5 05L A 1 609 1 05L 05L . K 5 05L A 1 610 1 05L 05L . L 5 05L A 1 611 1 05L 05L . M 5 05L A 1 612 1 05L 05L . N 5 05L A 1 613 1 05L SE . O 6 HOH A 1 701 1 HOH HOH . O 6 HOH A 2 702 2 HOH HOH . O 6 HOH A 3 703 3 HOH HOH . O 6 HOH A 4 704 4 HOH HOH . O 6 HOH A 5 705 5 HOH HOH . O 6 HOH A 6 706 6 HOH HOH . O 6 HOH A 7 707 7 HOH HOH . O 6 HOH A 8 708 8 HOH HOH . O 6 HOH A 9 709 9 HOH HOH . O 6 HOH A 10 710 10 HOH HOH . O 6 HOH A 11 711 11 HOH HOH . O 6 HOH A 12 712 12 HOH HOH . O 6 HOH A 13 713 13 HOH HOH . O 6 HOH A 14 714 14 HOH HOH . O 6 HOH A 15 715 15 HOH HOH . O 6 HOH A 16 716 16 HOH HOH . O 6 HOH A 17 717 17 HOH HOH . O 6 HOH A 18 718 18 HOH HOH . O 6 HOH A 19 719 19 HOH HOH . O 6 HOH A 20 720 20 HOH HOH . O 6 HOH A 21 721 21 HOH HOH . O 6 HOH A 22 722 22 HOH HOH . O 6 HOH A 23 723 23 HOH HOH . O 6 HOH A 24 724 24 HOH HOH . O 6 HOH A 25 725 25 HOH HOH . O 6 HOH A 26 726 26 HOH HOH . O 6 HOH A 27 727 27 HOH HOH . O 6 HOH A 28 728 28 HOH HOH . O 6 HOH A 29 729 29 HOH HOH . O 6 HOH A 30 730 30 HOH HOH . O 6 HOH A 31 731 31 HOH HOH . O 6 HOH A 32 732 32 HOH HOH . O 6 HOH A 33 733 33 HOH HOH . O 6 HOH A 34 734 34 HOH HOH . O 6 HOH A 35 735 35 HOH HOH . O 6 HOH A 36 736 36 HOH HOH . O 6 HOH A 37 737 37 HOH HOH . O 6 HOH A 38 738 38 HOH HOH . O 6 HOH A 39 739 39 HOH HOH . O 6 HOH A 40 740 40 HOH HOH . O 6 HOH A 41 741 41 HOH HOH . O 6 HOH A 42 742 42 HOH HOH . O 6 HOH A 43 743 43 HOH HOH . O 6 HOH A 44 744 44 HOH HOH . O 6 HOH A 45 745 45 HOH HOH . O 6 HOH A 46 746 46 HOH HOH . O 6 HOH A 47 747 47 HOH HOH . O 6 HOH A 48 748 48 HOH HOH . O 6 HOH A 49 749 49 HOH HOH . O 6 HOH A 50 750 50 HOH HOH . O 6 HOH A 51 751 51 HOH HOH . O 6 HOH A 52 752 52 HOH HOH . O 6 HOH A 53 753 53 HOH HOH . O 6 HOH A 54 754 54 HOH HOH . O 6 HOH A 55 755 55 HOH HOH . O 6 HOH A 56 756 56 HOH HOH . O 6 HOH A 57 757 57 HOH HOH . O 6 HOH A 58 758 58 HOH HOH . O 6 HOH A 59 759 59 HOH HOH . O 6 HOH A 60 760 60 HOH HOH . O 6 HOH A 61 761 61 HOH HOH . O 6 HOH A 62 762 62 HOH HOH . O 6 HOH A 63 763 63 HOH HOH . O 6 HOH A 64 764 64 HOH HOH . O 6 HOH A 65 765 65 HOH HOH . O 6 HOH A 66 766 66 HOH HOH . O 6 HOH A 67 767 67 HOH HOH . O 6 HOH A 68 768 68 HOH HOH . O 6 HOH A 69 769 69 HOH HOH . O 6 HOH A 70 770 70 HOH HOH . O 6 HOH A 71 771 71 HOH HOH . O 6 HOH A 72 772 72 HOH HOH . O 6 HOH A 73 773 73 HOH HOH . O 6 HOH A 74 774 74 HOH HOH . O 6 HOH A 75 775 75 HOH HOH . O 6 HOH A 76 776 76 HOH HOH . O 6 HOH A 77 777 77 HOH HOH . O 6 HOH A 78 778 78 HOH HOH . O 6 HOH A 79 779 79 HOH HOH . O 6 HOH A 80 780 80 HOH HOH . O 6 HOH A 81 781 81 HOH HOH . O 6 HOH A 82 782 82 HOH HOH . O 6 HOH A 83 783 83 HOH HOH . O 6 HOH A 84 784 84 HOH HOH . O 6 HOH A 85 785 85 HOH HOH . O 6 HOH A 86 786 86 HOH HOH . O 6 HOH A 87 787 87 HOH HOH . O 6 HOH A 88 788 88 HOH HOH . O 6 HOH A 89 789 89 HOH HOH . O 6 HOH A 90 790 90 HOH HOH . O 6 HOH A 91 791 91 HOH HOH . O 6 HOH A 92 792 92 HOH HOH . O 6 HOH A 93 793 93 HOH HOH . O 6 HOH A 94 794 94 HOH HOH . O 6 HOH A 95 795 95 HOH HOH . O 6 HOH A 96 796 96 HOH HOH . O 6 HOH A 97 797 97 HOH HOH . O 6 HOH A 98 798 98 HOH HOH . O 6 HOH A 99 799 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 29.844 _atom_site.Cartn_y 33.74 _atom_site.Cartn_z 14.612 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 17.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 601 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #