data_3USP
#
_model_server_result.job_id            SLDkbNDqiXEW0y2YKoF0rQ 
_model_server_result.datetime_utc      '2024-11-23 10:37:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3usp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":611}' 
#
_entry.id    3USP 
#
_exptl.entry_id    3USP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              341.303 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'heptyl 1-seleno-beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.15 
_cell.angle_gamma         90 
_cell.entry_id            3USP 
_cell.length_a            89.697 
_cell.length_b            86.359 
_cell.length_c            81.399 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3USP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 80.976582 0 80.930535 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLY 20 A GLY 20 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc2 A O ALA 22 A ALA 22 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? 
metalc ? metalc3 A O VAL 23 A VAL 23 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc4 A OD1 ASN 27 A ASN 27 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc5 A O THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc6 A OG1 THR 254 A THR 254 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
metalc ? metalc7 A OD1 ASN 286 A ASN 286 1_555 C NA NA . A NA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
metalc ? metalc8 A O ALA 351 A ALA 351 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc9 A OG1 THR 354 A THR 354 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc10 A OG SER 355 A SER 355 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc11 C NA NA . A NA 602 1_555 E OXT LEU . A LEU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.559 ? 
#
_chem_comp.formula           'C13 H26 O5 Se' 
_chem_comp.formula_weight    341.303 
_chem_comp.id                05L 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'heptyl 1-seleno-beta-D-glucopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'heptyl 1-seleno-beta-D-glucoside;heptyl 1-seleno-D-glucoside;heptyl 1-seleno-glucoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 SE 05L sing 1 n n 
C1' SE 05L sing 2 n n 
C1 C2 05L sing 3 n n 
C1 O5 05L sing 4 n n 
C1 H1 05L sing 5 n n 
O2 C2 05L sing 6 n n 
C3 C2 05L sing 7 n n 
C2 H2 05L sing 8 n n 
O2 HO2 05L sing 9 n n 
C3 O3 05L sing 10 n n 
C3 C4 05L sing 11 n n 
C3 H3 05L sing 12 n n 
O3 HO3 05L sing 13 n n 
C5 C4 05L sing 14 n n 
O4 C4 05L sing 15 n n 
C4 H4 05L sing 16 n n 
O4 HO4 05L sing 17 n n 
C5 O5 05L sing 18 n n 
C5 C6 05L sing 19 n n 
C5 H5 05L sing 20 n n 
C6 O6 05L sing 21 n n 
C6 H61 05L sing 22 n n 
C6 H62 05L sing 23 n n 
O6 HO6 05L sing 24 n n 
C1' C2' 05L sing 25 n n 
C1' H1' 05L sing 26 n n 
C1' "H1'A" 05L sing 27 n n 
C2' C3' 05L sing 28 n n 
C2' H2' 05L sing 29 n n 
C2' "H2'A" 05L sing 30 n n 
C3' C4' 05L sing 31 n n 
C3' H3' 05L sing 32 n n 
C3' "H3'A" 05L sing 33 n n 
C4' C5' 05L sing 34 n n 
C4' H4' 05L sing 35 n n 
C4' "H4'A" 05L sing 36 n n 
C5' C6' 05L sing 37 n n 
C5' H5' 05L sing 38 n n 
C5' "H5'A" 05L sing 39 n n 
C6' C7' 05L sing 40 n n 
C6' H6' 05L sing 41 n n 
C6' "H6'A" 05L sing 42 n n 
C7' H7' 05L sing 43 n n 
C7' "H7'A" 05L sing 44 n n 
C7' "H7'B" 05L sing 45 n n 
#
_atom_sites.entry_id                     3USP 
_atom_sites.fract_transf_matrix[1][1]    0.011149 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001201 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01158 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012356 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 601 751 NA NA . 
C 2 NA A 1 602 752 NA NA . 
D 3 CL A 1 603 753 CL CL . 
E 4 LEU A 1 604 601 LEU LEU . 
F 5 05L A 1 605 1 05L 05L . 
G 5 05L A 1 606 1 05L 05L . 
H 5 05L A 1 607 1 05L 05L . 
I 5 05L A 1 608 1 05L 05L . 
J 5 05L A 1 609 1 05L 05L . 
K 5 05L A 1 610 1 05L 05L . 
L 5 05L A 1 611 1 05L 05L . 
M 5 05L A 1 612 1 05L 05L . 
N 5 05L A 1 613 1 05L SE . 
O 6 HOH A 1 701 1 HOH HOH . 
O 6 HOH A 2 702 2 HOH HOH . 
O 6 HOH A 3 703 3 HOH HOH . 
O 6 HOH A 4 704 4 HOH HOH . 
O 6 HOH A 5 705 5 HOH HOH . 
O 6 HOH A 6 706 6 HOH HOH . 
O 6 HOH A 7 707 7 HOH HOH . 
O 6 HOH A 8 708 8 HOH HOH . 
O 6 HOH A 9 709 9 HOH HOH . 
O 6 HOH A 10 710 10 HOH HOH . 
O 6 HOH A 11 711 11 HOH HOH . 
O 6 HOH A 12 712 12 HOH HOH . 
O 6 HOH A 13 713 13 HOH HOH . 
O 6 HOH A 14 714 14 HOH HOH . 
O 6 HOH A 15 715 15 HOH HOH . 
O 6 HOH A 16 716 16 HOH HOH . 
O 6 HOH A 17 717 17 HOH HOH . 
O 6 HOH A 18 718 18 HOH HOH . 
O 6 HOH A 19 719 19 HOH HOH . 
O 6 HOH A 20 720 20 HOH HOH . 
O 6 HOH A 21 721 21 HOH HOH . 
O 6 HOH A 22 722 22 HOH HOH . 
O 6 HOH A 23 723 23 HOH HOH . 
O 6 HOH A 24 724 24 HOH HOH . 
O 6 HOH A 25 725 25 HOH HOH . 
O 6 HOH A 26 726 26 HOH HOH . 
O 6 HOH A 27 727 27 HOH HOH . 
O 6 HOH A 28 728 28 HOH HOH . 
O 6 HOH A 29 729 29 HOH HOH . 
O 6 HOH A 30 730 30 HOH HOH . 
O 6 HOH A 31 731 31 HOH HOH . 
O 6 HOH A 32 732 32 HOH HOH . 
O 6 HOH A 33 733 33 HOH HOH . 
O 6 HOH A 34 734 34 HOH HOH . 
O 6 HOH A 35 735 35 HOH HOH . 
O 6 HOH A 36 736 36 HOH HOH . 
O 6 HOH A 37 737 37 HOH HOH . 
O 6 HOH A 38 738 38 HOH HOH . 
O 6 HOH A 39 739 39 HOH HOH . 
O 6 HOH A 40 740 40 HOH HOH . 
O 6 HOH A 41 741 41 HOH HOH . 
O 6 HOH A 42 742 42 HOH HOH . 
O 6 HOH A 43 743 43 HOH HOH . 
O 6 HOH A 44 744 44 HOH HOH . 
O 6 HOH A 45 745 45 HOH HOH . 
O 6 HOH A 46 746 46 HOH HOH . 
O 6 HOH A 47 747 47 HOH HOH . 
O 6 HOH A 48 748 48 HOH HOH . 
O 6 HOH A 49 749 49 HOH HOH . 
O 6 HOH A 50 750 50 HOH HOH . 
O 6 HOH A 51 751 51 HOH HOH . 
O 6 HOH A 52 752 52 HOH HOH . 
O 6 HOH A 53 753 53 HOH HOH . 
O 6 HOH A 54 754 54 HOH HOH . 
O 6 HOH A 55 755 55 HOH HOH . 
O 6 HOH A 56 756 56 HOH HOH . 
O 6 HOH A 57 757 57 HOH HOH . 
O 6 HOH A 58 758 58 HOH HOH . 
O 6 HOH A 59 759 59 HOH HOH . 
O 6 HOH A 60 760 60 HOH HOH . 
O 6 HOH A 61 761 61 HOH HOH . 
O 6 HOH A 62 762 62 HOH HOH . 
O 6 HOH A 63 763 63 HOH HOH . 
O 6 HOH A 64 764 64 HOH HOH . 
O 6 HOH A 65 765 65 HOH HOH . 
O 6 HOH A 66 766 66 HOH HOH . 
O 6 HOH A 67 767 67 HOH HOH . 
O 6 HOH A 68 768 68 HOH HOH . 
O 6 HOH A 69 769 69 HOH HOH . 
O 6 HOH A 70 770 70 HOH HOH . 
O 6 HOH A 71 771 71 HOH HOH . 
O 6 HOH A 72 772 72 HOH HOH . 
O 6 HOH A 73 773 73 HOH HOH . 
O 6 HOH A 74 774 74 HOH HOH . 
O 6 HOH A 75 775 75 HOH HOH . 
O 6 HOH A 76 776 76 HOH HOH . 
O 6 HOH A 77 777 77 HOH HOH . 
O 6 HOH A 78 778 78 HOH HOH . 
O 6 HOH A 79 779 79 HOH HOH . 
O 6 HOH A 80 780 80 HOH HOH . 
O 6 HOH A 81 781 81 HOH HOH . 
O 6 HOH A 82 782 82 HOH HOH . 
O 6 HOH A 83 783 83 HOH HOH . 
O 6 HOH A 84 784 84 HOH HOH . 
O 6 HOH A 85 785 85 HOH HOH . 
O 6 HOH A 86 786 86 HOH HOH . 
O 6 HOH A 87 787 87 HOH HOH . 
O 6 HOH A 88 788 88 HOH HOH . 
O 6 HOH A 89 789 89 HOH HOH . 
O 6 HOH A 90 790 90 HOH HOH . 
O 6 HOH A 91 791 91 HOH HOH . 
O 6 HOH A 92 792 92 HOH HOH . 
O 6 HOH A 93 793 93 HOH HOH . 
O 6 HOH A 94 794 94 HOH HOH . 
O 6 HOH A 95 795 95 HOH HOH . 
O 6 HOH A 96 796 96 HOH HOH . 
O 6 HOH A 97 797 97 HOH HOH . 
O 6 HOH A 98 798 98 HOH HOH . 
O 6 HOH A 99 799 99 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           SE 
_atom_site.label_atom_id         SE 
_atom_site.label_comp_id         05L 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       5 
_atom_site.Cartn_x               18.927 
_atom_site.Cartn_y               20.979 
_atom_site.Cartn_z               26.692 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.43 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          SE 
_atom_site.auth_comp_id          05L 
_atom_site.auth_seq_id           611 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           1 
#