data_3UTV # _model_server_result.job_id dCezeuB9bjVLjJO18ncTCg _model_server_result.datetime_utc '2024-11-22 20:46:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3utv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3UTV # _exptl.entry_id 3UTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UTV _cell.length_a 46.08 _cell.length_b 104.009 _cell.length_c 129.743 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.324 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 360 n n C1 C6 RET sing 361 n n C1 C16 RET sing 362 n n C1 C17 RET sing 363 n n C2 C3 RET sing 364 n n C2 H21 RET sing 365 n n C2 H22 RET sing 366 n n C3 C4 RET sing 367 n n C3 H31 RET sing 368 n n C3 H32 RET sing 369 n n C4 C5 RET sing 370 n n C4 H41 RET sing 371 n n C4 H42 RET sing 372 n n C5 C6 RET doub 373 n n C5 C18 RET sing 374 n n C6 C7 RET sing 375 n n C7 C8 RET doub 376 e n C7 H7 RET sing 377 n n C8 C9 RET sing 378 n n C8 H8 RET sing 379 n n C9 C10 RET doub 380 e n C9 C19 RET sing 381 n n C10 C11 RET sing 382 n n C10 H10 RET sing 383 n n C11 C12 RET doub 384 e n C11 H11 RET sing 385 n n C12 C13 RET sing 386 n n C12 H12 RET sing 387 n n C13 C14 RET doub 388 e n C13 C20 RET sing 389 n n C14 C15 RET sing 390 n n C14 H14 RET sing 391 n n C15 O1 RET doub 392 n n C15 H15 RET sing 393 n n C16 H161 RET sing 394 n n C16 H162 RET sing 395 n n C16 H163 RET sing 396 n n C17 H171 RET sing 397 n n C17 H172 RET sing 398 n n C17 H173 RET sing 399 n n C18 H181 RET sing 400 n n C18 H182 RET sing 401 n n C18 H183 RET sing 402 n n C19 H191 RET sing 403 n n C19 H192 RET sing 404 n n C19 H193 RET sing 405 n n C20 H201 RET sing 406 n n C20 H202 RET sing 407 n n C20 H203 RET sing 408 n n # _atom_sites.entry_id 3UTV _atom_sites.fract_transf_matrix[1][1] 0.021701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 MC3 A 1 302 501 MC3 MC3 . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -26.877 -10.594 -2.979 1 26.65 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -27.191 -10.072 -4.306 1 30.06 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -27.95 -8.797 -4.288 1 27.84 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -28.456 -8.2 -2.973 1 34.96 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -27.718 -8.654 -1.751 1 28.47 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -26.912 -9.747 -1.737 1 27.12 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -26.238 -10.124 -0.476 1 25.4 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -25.355 -11.127 -0.328 1 22.28 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -24.699 -11.415 0.956 1 28.86 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -23.724 -12.372 0.93 1 20.76 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -22.963 -12.728 2.11 1 29.47 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -22.049 -13.677 1.933 1 26.66 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -21.212 -14.324 2.926 1 29.39 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -20.601 -15.369 2.356 1 43.84 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -19.748 -16.273 3.07 1 39.1 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -26.827 -12.124 -2.867 1 27.01 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -25.337 -10.458 -3.289 1 22.01 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -27.969 -7.831 -0.52 1 32.09 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -25.028 -10.644 2.234 1 26.41 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -21.097 -14.026 4.411 1 29.25 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #