data_3UTV # _model_server_result.job_id mqGPfEdj9vq5KOCpzfSvUA _model_server_result.datetime_utc '2024-11-22 20:25:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3utv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 3UTV # _exptl.entry_id 3UTV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.933 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UTV _cell.length_a 46.08 _cell.length_b 104.009 _cell.length_c 129.743 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UTV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.324 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 184 n n C1 O3P MC3 sing 185 n n C1 H11 MC3 sing 186 n n C1 H12 MC3 sing 187 n n C2 C3 MC3 sing 188 n n C2 O2 MC3 sing 189 n n C2 H2 MC3 sing 190 n n C3 O3 MC3 sing 191 n n C3 H31 MC3 sing 192 n n C3 H32 MC3 sing 193 n n C4 C5 MC3 sing 194 n n C4 O4P MC3 sing 195 n n C4 H41 MC3 sing 196 n n C4 H42 MC3 sing 197 n n C5 N MC3 sing 198 n n C5 H51 MC3 sing 199 n n C5 H52 MC3 sing 200 n n C6 N MC3 sing 201 n n C6 H61 MC3 sing 202 n n C6 H62 MC3 sing 203 n n C6 H63 MC3 sing 204 n n C7 N MC3 sing 205 n n C7 H71 MC3 sing 206 n n C7 H72 MC3 sing 207 n n C7 H73 MC3 sing 208 n n C8 N MC3 sing 209 n n C8 H81 MC3 sing 210 n n C8 H82 MC3 sing 211 n n C8 H83 MC3 sing 212 n n C11 C12 MC3 sing 213 n n C11 O3 MC3 sing 214 n n C11 O11 MC3 doub 215 n n C12 C13 MC3 sing 216 n n C12 H121 MC3 sing 217 n n C12 H122 MC3 sing 218 n n C13 C14 MC3 sing 219 n n C13 H131 MC3 sing 220 n n C13 H132 MC3 sing 221 n n C14 C15 MC3 sing 222 n n C14 H141 MC3 sing 223 n n C14 H142 MC3 sing 224 n n C15 C16 MC3 sing 225 n n C15 H151 MC3 sing 226 n n C15 H152 MC3 sing 227 n n C16 C17 MC3 sing 228 n n C16 H161 MC3 sing 229 n n C16 H162 MC3 sing 230 n n C17 C18 MC3 sing 231 n n C17 H171 MC3 sing 232 n n C17 H172 MC3 sing 233 n n C18 C19 MC3 sing 234 n n C18 H181 MC3 sing 235 n n C18 H182 MC3 sing 236 n n C19 C20 MC3 sing 237 n n C19 H191 MC3 sing 238 n n C19 H192 MC3 sing 239 n n C20 C21 MC3 sing 240 n n C20 H201 MC3 sing 241 n n C20 H202 MC3 sing 242 n n C21 C22 MC3 sing 243 n n C21 H211 MC3 sing 244 n n C21 H212 MC3 sing 245 n n C22 C23 MC3 sing 246 n n C22 H221 MC3 sing 247 n n C22 H222 MC3 sing 248 n n C23 C24 MC3 sing 249 n n C23 H231 MC3 sing 250 n n C23 H232 MC3 sing 251 n n C24 H241 MC3 sing 252 n n C24 H242 MC3 sing 253 n n C24 H243 MC3 sing 254 n n C31 C32 MC3 sing 255 n n C31 O2 MC3 sing 256 n n C31 O31 MC3 doub 257 n n C32 C33 MC3 sing 258 n n C32 H321 MC3 sing 259 n n C32 H322 MC3 sing 260 n n C33 C34 MC3 sing 261 n n C33 H331 MC3 sing 262 n n C33 H332 MC3 sing 263 n n C34 C35 MC3 sing 264 n n C34 H341 MC3 sing 265 n n C34 H342 MC3 sing 266 n n C35 C36 MC3 sing 267 n n C35 H351 MC3 sing 268 n n C35 H352 MC3 sing 269 n n C36 C37 MC3 sing 270 n n C36 H361 MC3 sing 271 n n C36 H362 MC3 sing 272 n n C37 C38 MC3 sing 273 n n C37 H371 MC3 sing 274 n n C37 H372 MC3 sing 275 n n C38 C39 MC3 sing 276 n n C38 H381 MC3 sing 277 n n C38 H382 MC3 sing 278 n n C39 C40 MC3 sing 279 n n C39 H391 MC3 sing 280 n n C39 H392 MC3 sing 281 n n C40 C41 MC3 sing 282 n n C40 H401 MC3 sing 283 n n C40 H402 MC3 sing 284 n n C41 C42 MC3 sing 285 n n C41 H411 MC3 sing 286 n n C41 H412 MC3 sing 287 n n C42 C43 MC3 sing 288 n n C42 H421 MC3 sing 289 n n C42 H422 MC3 sing 290 n n C43 C44 MC3 sing 291 n n C43 H431 MC3 sing 292 n n C43 H432 MC3 sing 293 n n C44 H441 MC3 sing 294 n n C44 H442 MC3 sing 295 n n C44 H443 MC3 sing 296 n n O1P P MC3 doub 297 n n O2P P MC3 sing 298 n n O3P P MC3 sing 299 n n O4P P MC3 sing 300 n n # _atom_sites.entry_id 3UTV _atom_sites.fract_transf_matrix[1][1] 0.021701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007708 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 MC3 A 1 302 501 MC3 MC3 . D 4 HOH A 1 401 401 HOH HOH . D 4 HOH A 2 402 402 HOH HOH . D 4 HOH A 3 403 403 HOH HOH . D 4 HOH A 4 404 404 HOH HOH . D 4 HOH A 5 405 405 HOH HOH . D 4 HOH A 6 406 406 HOH HOH . D 4 HOH A 7 407 407 HOH HOH . D 4 HOH A 8 408 408 HOH HOH . D 4 HOH A 9 409 409 HOH HOH . D 4 HOH A 10 410 410 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . C 3 -39.568 2.413 -15.245 1 88.7 ? C1 MC3 302 A 1 HETATM 2 C C2 MC3 . . . C 3 -39.392 2.442 -13.723 1 84.71 ? C2 MC3 302 A 1 HETATM 3 C C3 MC3 . . . C 3 -40.119 3.713 -13.221 1 82.55 ? C3 MC3 302 A 1 HETATM 4 C C4 MC3 . . . C 3 -41.575 -0.369 -15.24 1 100.98 ? C4 MC3 302 A 1 HETATM 5 C C5 MC3 . . . C 3 -43.064 -0.72 -15.036 1 98.57 ? C5 MC3 302 A 1 HETATM 6 C C6 MC3 . . . C 3 -44.691 -2.301 -14.183 1 97.31 ? C6 MC3 302 A 1 HETATM 7 C C7 MC3 . . . C 3 -42.512 -2.241 -13.16 1 94.24 ? C7 MC3 302 A 1 HETATM 8 C C8 MC3 . . . C 3 -42.861 -3.044 -15.45 1 97.92 ? C8 MC3 302 A 1 HETATM 9 C C11 MC3 . . . C 3 -38.467 5.131 -11.904 1 71.28 ? C11 MC3 302 A 1 HETATM 10 C C12 MC3 . . . C 3 -38.779 4.51 -10.582 1 63.83 ? C12 MC3 302 A 1 HETATM 11 C C13 MC3 . . . C 3 -37.557 3.69 -10.257 1 53.79 ? C13 MC3 302 A 1 HETATM 12 C C14 MC3 . . . C 3 -36.893 4.271 -9.055 1 49.19 ? C14 MC3 302 A 1 HETATM 13 C C15 MC3 . . . C 3 -37.606 3.798 -7.836 1 52.36 ? C15 MC3 302 A 1 HETATM 14 C C16 MC3 . . . C 3 -36.533 3.202 -6.98 1 50.08 ? C16 MC3 302 A 1 HETATM 15 C C17 MC3 . . . C 3 -36.583 3.789 -5.604 1 55.26 ? C17 MC3 302 A 1 HETATM 16 C C18 MC3 . . . C 3 -36.062 2.719 -4.686 1 57.3 ? C18 MC3 302 A 1 HETATM 17 C C19 MC3 . . . C 3 -37.136 1.692 -4.409 1 62.45 ? C19 MC3 302 A 1 HETATM 18 C C20 MC3 . . . C 3 -36.612 0.55 -3.564 1 66.28 ? C20 MC3 302 A 1 HETATM 19 C C21 MC3 . . . C 3 -35.109 0.587 -3.306 1 65.91 ? C21 MC3 302 A 1 HETATM 20 C C22 MC3 . . . C 3 -34.803 0.465 -1.825 1 72.77 ? C22 MC3 302 A 1 HETATM 21 C C23 MC3 . . . C 3 -34.609 -1.005 -1.425 1 77.08 ? C23 MC3 302 A 1 HETATM 22 C C24 MC3 . . . C 3 -33.22 -1.283 -0.87 1 73.29 ? C24 MC3 302 A 1 HETATM 23 C C31 MC3 . . . C 3 -39.071 -0.035 -13.084 1 68.82 ? C31 MC3 302 A 1 HETATM 24 C C32 MC3 . . . C 3 -38.538 -0.663 -11.806 1 67.1 ? C32 MC3 302 A 1 HETATM 25 C C33 MC3 . . . C 3 -37.091 -0.368 -11.434 1 61.36 ? C33 MC3 302 A 1 HETATM 26 C C34 MC3 . . . C 3 -37.029 0.257 -10.042 1 58.44 ? C34 MC3 302 A 1 HETATM 27 C C35 MC3 . . . C 3 -36.8 -0.688 -8.872 1 54.23 ? C35 MC3 302 A 1 HETATM 28 C C36 MC3 . . . C 3 -35.321 -0.896 -8.593 1 51.84 ? C36 MC3 302 A 1 HETATM 29 C C37 MC3 . . . C 3 -34.739 0.427 -8.233 1 50.44 ? C37 MC3 302 A 1 HETATM 30 C C38 MC3 . . . C 3 -33.484 0.726 -8.994 1 53.03 ? C38 MC3 302 A 1 HETATM 31 C C39 MC3 . . . C 3 -32.445 0.621 -7.92 1 37.55 ? C39 MC3 302 A 1 HETATM 32 C C40 MC3 . . . C 3 -31.157 1.206 -8.389 1 40.17 ? C40 MC3 302 A 1 HETATM 33 C C41 MC3 . . . C 3 -30.851 1.228 -9.862 1 38.7 ? C41 MC3 302 A 1 HETATM 34 C C42 MC3 . . . C 3 -29.366 1.504 -10.01 1 33.68 ? C42 MC3 302 A 1 HETATM 35 C C43 MC3 . . . C 3 -28.742 1.885 -11.345 1 38.8 ? C43 MC3 302 A 1 HETATM 36 C C44 MC3 . . . C 3 -27.206 1.787 -11.338 1 33.89 ? C44 MC3 302 A 1 HETATM 37 N N MC3 . . . C 3 -43.26 -2.062 -14.436 1 97.84 ? N MC3 302 A 1 HETATM 38 O O2 MC3 . . . C 3 -39.873 1.212 -13.094 1 71.64 ? O2 MC3 302 A 1 HETATM 39 O O3 MC3 . . . C 3 -39.229 4.846 -13.118 1 78.24 ? O3 MC3 302 A 1 HETATM 40 O O11 MC3 . . . C 3 -37.519 5.889 -11.936 1 79.68 ? O11 MC3 302 A 1 HETATM 41 O O31 MC3 . . . C 3 -38.907 -0.669 -14.111 1 66.61 ? O31 MC3 302 A 1 HETATM 42 O O1P MC3 . . . C 3 -40.054 1.712 -17.98 1 103.84 ? O1P MC3 302 A 1 HETATM 43 O O2P MC3 . . . C 3 -38.736 -0.519 -17.664 1 100.07 ? O2P MC3 302 A 1 HETATM 44 O O3P MC3 . . . C 3 -39.104 1.159 -15.767 1 97.98 ? O3P MC3 302 A 1 HETATM 45 O O4P MC3 . . . C 3 -41.108 -0.257 -16.614 1 104.8 ? O4P MC3 302 A 1 HETATM 46 P P MC3 . . . C 3 -39.721 0.504 -17.11 1 102.67 ? P MC3 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #