data_3UTW # _model_server_result.job_id gbse_aGIolVacK3zr4DTOQ _model_server_result.datetime_utc '2024-11-22 19:46:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3utw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3UTW # _exptl.entry_id 3UTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UTW _cell.length_a 45.281 _cell.length_b 103.059 _cell.length_c 128.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.297 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 408 n n C1 C6 RET sing 409 n n C1 C16 RET sing 410 n n C1 C17 RET sing 411 n n C2 C3 RET sing 412 n n C2 H21 RET sing 413 n n C2 H22 RET sing 414 n n C3 C4 RET sing 415 n n C3 H31 RET sing 416 n n C3 H32 RET sing 417 n n C4 C5 RET sing 418 n n C4 H41 RET sing 419 n n C4 H42 RET sing 420 n n C5 C6 RET doub 421 n n C5 C18 RET sing 422 n n C6 C7 RET sing 423 n n C7 C8 RET doub 424 e n C7 H7 RET sing 425 n n C8 C9 RET sing 426 n n C8 H8 RET sing 427 n n C9 C10 RET doub 428 e n C9 C19 RET sing 429 n n C10 C11 RET sing 430 n n C10 H10 RET sing 431 n n C11 C12 RET doub 432 e n C11 H11 RET sing 433 n n C12 C13 RET sing 434 n n C12 H12 RET sing 435 n n C13 C14 RET doub 436 e n C13 C20 RET sing 437 n n C14 C15 RET sing 438 n n C14 H14 RET sing 439 n n C15 O1 RET doub 440 n n C15 H15 RET sing 441 n n C16 H161 RET sing 442 n n C16 H162 RET sing 443 n n C16 H163 RET sing 444 n n C17 H171 RET sing 445 n n C17 H172 RET sing 446 n n C17 H173 RET sing 447 n n C18 H181 RET sing 448 n n C18 H182 RET sing 449 n n C18 H183 RET sing 450 n n C19 H191 RET sing 451 n n C19 H192 RET sing 452 n n C19 H193 RET sing 453 n n C20 H201 RET sing 454 n n C20 H202 RET sing 455 n n C20 H203 RET sing 456 n n # _atom_sites.entry_id 3UTW _atom_sites.fract_transf_matrix[1][1] 0.022084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 BOG A 1 302 401 BOG BOG . D 4 MC3 A 1 303 402 MC3 MC3 . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 508 HOH HOH . E 5 HOH A 9 509 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 -26.414 -10.414 -2.975 1 23.89 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 -26.982 -9.852 -4.284 1 19.91 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 -27.554 -8.474 -4.215 1 22.84 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 -28.122 -7.959 -2.923 1 25.28 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 -27.36 -8.463 -1.715 1 21.54 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 -26.58 -9.575 -1.704 1 23.55 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 -25.904 -9.96 -0.406 1 18.63 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 -25.136 -10.995 -0.184 1 18.54 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 -24.464 -11.277 1.115 1 23.71 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 -23.375 -12.104 1.061 1 22.26 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 -22.551 -12.567 2.187 1 23.51 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 -21.696 -13.541 1.897 1 2.61 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 -20.862 -14.244 2.902 1 12.45 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 -20.238 -15.314 2.389 1 9.05 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 -19.302 -16.232 2.992 1 17.27 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 -26.53 -11.965 -2.848 1 25.93 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 -24.907 -10.349 -3.254 1 21.17 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 -27.657 -7.707 -0.472 1 28.1 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 -24.93 -10.626 2.393 1 21.97 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 -20.854 -13.917 4.35 1 6.49 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #