data_3UTW # _model_server_result.job_id m4E88bbMczAkYD4Eix4Iqg _model_server_result.datetime_utc '2024-11-22 19:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3utw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 3UTW # _exptl.entry_id 3UTW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 677.933 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3UTW _cell.length_a 45.281 _cell.length_b 103.059 _cell.length_c 128.879 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UTW _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 216 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.297 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C36 H72 N O8 P' _chem_comp.formula_weight 677.933 _chem_comp.id MC3 _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MC3 sing 232 n n C1 O3P MC3 sing 233 n n C1 H11 MC3 sing 234 n n C1 H12 MC3 sing 235 n n C2 C3 MC3 sing 236 n n C2 O2 MC3 sing 237 n n C2 H2 MC3 sing 238 n n C3 O3 MC3 sing 239 n n C3 H31 MC3 sing 240 n n C3 H32 MC3 sing 241 n n C4 C5 MC3 sing 242 n n C4 O4P MC3 sing 243 n n C4 H41 MC3 sing 244 n n C4 H42 MC3 sing 245 n n C5 N MC3 sing 246 n n C5 H51 MC3 sing 247 n n C5 H52 MC3 sing 248 n n C6 N MC3 sing 249 n n C6 H61 MC3 sing 250 n n C6 H62 MC3 sing 251 n n C6 H63 MC3 sing 252 n n C7 N MC3 sing 253 n n C7 H71 MC3 sing 254 n n C7 H72 MC3 sing 255 n n C7 H73 MC3 sing 256 n n C8 N MC3 sing 257 n n C8 H81 MC3 sing 258 n n C8 H82 MC3 sing 259 n n C8 H83 MC3 sing 260 n n C11 C12 MC3 sing 261 n n C11 O3 MC3 sing 262 n n C11 O11 MC3 doub 263 n n C12 C13 MC3 sing 264 n n C12 H121 MC3 sing 265 n n C12 H122 MC3 sing 266 n n C13 C14 MC3 sing 267 n n C13 H131 MC3 sing 268 n n C13 H132 MC3 sing 269 n n C14 C15 MC3 sing 270 n n C14 H141 MC3 sing 271 n n C14 H142 MC3 sing 272 n n C15 C16 MC3 sing 273 n n C15 H151 MC3 sing 274 n n C15 H152 MC3 sing 275 n n C16 C17 MC3 sing 276 n n C16 H161 MC3 sing 277 n n C16 H162 MC3 sing 278 n n C17 C18 MC3 sing 279 n n C17 H171 MC3 sing 280 n n C17 H172 MC3 sing 281 n n C18 C19 MC3 sing 282 n n C18 H181 MC3 sing 283 n n C18 H182 MC3 sing 284 n n C19 C20 MC3 sing 285 n n C19 H191 MC3 sing 286 n n C19 H192 MC3 sing 287 n n C20 C21 MC3 sing 288 n n C20 H201 MC3 sing 289 n n C20 H202 MC3 sing 290 n n C21 C22 MC3 sing 291 n n C21 H211 MC3 sing 292 n n C21 H212 MC3 sing 293 n n C22 C23 MC3 sing 294 n n C22 H221 MC3 sing 295 n n C22 H222 MC3 sing 296 n n C23 C24 MC3 sing 297 n n C23 H231 MC3 sing 298 n n C23 H232 MC3 sing 299 n n C24 H241 MC3 sing 300 n n C24 H242 MC3 sing 301 n n C24 H243 MC3 sing 302 n n C31 C32 MC3 sing 303 n n C31 O2 MC3 sing 304 n n C31 O31 MC3 doub 305 n n C32 C33 MC3 sing 306 n n C32 H321 MC3 sing 307 n n C32 H322 MC3 sing 308 n n C33 C34 MC3 sing 309 n n C33 H331 MC3 sing 310 n n C33 H332 MC3 sing 311 n n C34 C35 MC3 sing 312 n n C34 H341 MC3 sing 313 n n C34 H342 MC3 sing 314 n n C35 C36 MC3 sing 315 n n C35 H351 MC3 sing 316 n n C35 H352 MC3 sing 317 n n C36 C37 MC3 sing 318 n n C36 H361 MC3 sing 319 n n C36 H362 MC3 sing 320 n n C37 C38 MC3 sing 321 n n C37 H371 MC3 sing 322 n n C37 H372 MC3 sing 323 n n C38 C39 MC3 sing 324 n n C38 H381 MC3 sing 325 n n C38 H382 MC3 sing 326 n n C39 C40 MC3 sing 327 n n C39 H391 MC3 sing 328 n n C39 H392 MC3 sing 329 n n C40 C41 MC3 sing 330 n n C40 H401 MC3 sing 331 n n C40 H402 MC3 sing 332 n n C41 C42 MC3 sing 333 n n C41 H411 MC3 sing 334 n n C41 H412 MC3 sing 335 n n C42 C43 MC3 sing 336 n n C42 H421 MC3 sing 337 n n C42 H422 MC3 sing 338 n n C43 C44 MC3 sing 339 n n C43 H431 MC3 sing 340 n n C43 H432 MC3 sing 341 n n C44 H441 MC3 sing 342 n n C44 H442 MC3 sing 343 n n C44 H443 MC3 sing 344 n n O1P P MC3 doub 345 n n O2P P MC3 sing 346 n n O3P P MC3 sing 347 n n O4P P MC3 sing 348 n n # _atom_sites.entry_id 3UTW _atom_sites.fract_transf_matrix[1][1] 0.022084 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009703 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 BOG A 1 302 401 BOG BOG . D 4 MC3 A 1 303 402 MC3 MC3 . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 508 HOH HOH . E 5 HOH A 9 509 509 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MC3 . . . D 4 -22.302 -27.809 -11.454 1 71.55 ? C1 MC3 303 A 1 HETATM 2 C C2 MC3 . . . D 4 -22.833 -27.167 -10.147 1 87.01 ? C2 MC3 303 A 1 HETATM 3 C C3 MC3 . . . D 4 -24.135 -27.87 -9.513 1 94.49 ? C3 MC3 303 A 1 HETATM 4 C C4 MC3 . . . D 4 -22.019 -25.78 -16.255 1 76.77 ? C4 MC3 303 A 1 HETATM 5 C C5 MC3 . . . D 4 -22.188 -27.041 -17.18 1 68.72 ? C5 MC3 303 A 1 HETATM 6 C C6 MC3 . . . D 4 -20.934 -29.087 -17.654 1 62.75 ? C6 MC3 303 A 1 HETATM 7 C C7 MC3 . . . D 4 -19.743 -27.006 -17.411 1 73.34 ? C7 MC3 303 A 1 HETATM 8 C C8 MC3 . . . D 4 -21.022 -27.407 -19.364 1 58.49 ? C8 MC3 303 A 1 HETATM 9 C C11 MC3 . . . D 4 -25.157 -30.193 -10.474 1 93.81 ? C11 MC3 303 A 1 HETATM 10 C C12 MC3 . . . D 4 -26.517 -30.882 -10.207 1 72.92 ? C12 MC3 303 A 1 HETATM 11 C C13 MC3 . . . D 4 -27.03 -30.782 -8.77 1 70.26 ? C13 MC3 303 A 1 HETATM 12 C C14 MC3 . . . D 4 -28.04 -31.887 -8.486 1 72.3 ? C14 MC3 303 A 1 HETATM 13 C C15 MC3 . . . D 4 -28.057 -32.346 -7.014 1 77.76 ? C15 MC3 303 A 1 HETATM 14 C C16 MC3 . . . D 4 -27.757 -33.841 -6.733 1 76.58 ? C16 MC3 303 A 1 HETATM 15 C C17 MC3 . . . D 4 -28.359 -34.849 -7.725 1 87.18 ? C17 MC3 303 A 1 HETATM 16 C C18 MC3 . . . D 4 -28.65 -36.268 -7.179 1 79.23 ? C18 MC3 303 A 1 HETATM 17 C C19 MC3 . . . D 4 -30.057 -36.808 -7.575 1 80.97 ? C19 MC3 303 A 1 HETATM 18 C C20 MC3 . . . D 4 -30.153 -38.313 -7.902 1 74.14 ? C20 MC3 303 A 1 HETATM 19 C C21 MC3 . . . D 4 -30.991 -39.175 -6.922 1 75.71 ? C21 MC3 303 A 1 HETATM 20 C C22 MC3 . . . D 4 -30.627 -39.054 -5.416 1 77.84 ? C22 MC3 303 A 1 HETATM 21 C C23 MC3 . . . D 4 -30.455 -40.352 -4.572 1 68.99 ? C23 MC3 303 A 1 HETATM 22 C C24 MC3 . . . D 4 -30.49 -40.151 -3.05 1 53.29 ? C24 MC3 303 A 1 HETATM 23 C C31 MC3 . . . D 4 -21.772 -27.243 -7.879 1 110.64 ? C31 MC3 303 A 1 HETATM 24 C C32 MC3 . . . D 4 -20.912 -28.419 -7.362 1 96.49 ? C32 MC3 303 A 1 HETATM 25 C C33 MC3 . . . D 4 -20.018 -29.086 -8.446 1 84.66 ? C33 MC3 303 A 1 HETATM 26 C C34 MC3 . . . D 4 -19.205 -30.3 -7.934 1 64.97 ? C34 MC3 303 A 1 HETATM 27 C C35 MC3 . . . D 4 -18.576 -30.14 -6.522 1 55.76 ? C35 MC3 303 A 1 HETATM 28 C C36 MC3 . . . D 4 -17.077 -30.549 -6.375 1 71.77 ? C36 MC3 303 A 1 HETATM 29 C C37 MC3 . . . D 4 -16.713 -31.601 -5.284 1 58.97 ? C37 MC3 303 A 1 HETATM 30 C C38 MC3 . . . D 4 -17.026 -33.091 -5.598 1 68.13 ? C38 MC3 303 A 1 HETATM 31 C C39 MC3 . . . D 4 -17.473 -33.378 -7.071 1 67.77 ? C39 MC3 303 A 1 HETATM 32 C C40 MC3 . . . D 4 -17.34 -34.81 -7.648 1 55.57 ? C40 MC3 303 A 1 HETATM 33 C C41 MC3 . . . D 4 -18.293 -35.223 -8.819 1 61.19 ? C41 MC3 303 A 1 HETATM 34 C C42 MC3 . . . D 4 -18.311 -34.472 -10.18 1 55.2 ? C42 MC3 303 A 1 HETATM 35 C C43 MC3 . . . D 4 -18.729 -35.353 -11.384 1 62.77 ? C43 MC3 303 A 1 HETATM 36 C C44 MC3 . . . D 4 -18.889 -34.664 -12.754 1 52.05 ? C44 MC3 303 A 1 HETATM 37 N N MC3 . . . D 4 -20.991 -27.62 -17.887 1 75.65 ? N MC3 303 A 1 HETATM 38 O O2 MC3 . . . D 4 -21.696 -26.805 -9.302 1 77.21 ? O2 MC3 303 A 1 HETATM 39 O O3 MC3 . . . D 4 -24.418 -29.315 -9.51 1 94.43 ? O3 MC3 303 A 1 HETATM 40 O O11 MC3 . . . D 4 -24.618 -30.426 -11.563 1 80.47 ? O11 MC3 303 A 1 HETATM 41 O O31 MC3 . . . D 4 -22.536 -26.657 -7.08 1 88.37 ? O31 MC3 303 A 1 HETATM 42 O O1P MC3 . . . D 4 -22.413 -28.613 -14.362 1 86.48 ? O1P MC3 303 A 1 HETATM 43 O O2P MC3 . . . D 4 -24.214 -26.807 -14.847 1 67.72 -1 O2P MC3 303 A 1 HETATM 44 O O3P MC3 . . . D 4 -22.611 -26.879 -12.524 1 66.56 ? O3P MC3 303 A 1 HETATM 45 O O4P MC3 . . . D 4 -21.897 -25.973 -14.823 1 50.87 ? O4P MC3 303 A 1 HETATM 46 P P MC3 . . . D 4 -22.86 -27.152 -14.165 1 94.13 ? P MC3 303 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #