data_3UTX # _model_server_result.job_id gagdLEVEnRwP3dTZ9MhbzQ _model_server_result.datetime_utc '2024-11-22 14:59:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3utx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 3UTX # _exptl.entry_id 3UTX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.56 _cell.angle_gamma 90 _cell.entry_id 3UTX _cell.length_a 45.347 _cell.length_b 108.671 _cell.length_c 56.182 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3UTX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,F 1 1 B,D,E,G 2 1 A,B,C,D,E,F,G 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 216 A LYS 216 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 B NZ LYS 216 B LYS 216 1_555 D C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 280 n n C1 C6 RET sing 281 n n C1 C16 RET sing 282 n n C1 C17 RET sing 283 n n C2 C3 RET sing 284 n n C2 H21 RET sing 285 n n C2 H22 RET sing 286 n n C3 C4 RET sing 287 n n C3 H31 RET sing 288 n n C3 H32 RET sing 289 n n C4 C5 RET sing 290 n n C4 H41 RET sing 291 n n C4 H42 RET sing 292 n n C5 C6 RET doub 293 n n C5 C18 RET sing 294 n n C6 C7 RET sing 295 n n C7 C8 RET doub 296 e n C7 H7 RET sing 297 n n C8 C9 RET sing 298 n n C8 H8 RET sing 299 n n C9 C10 RET doub 300 e n C9 C19 RET sing 301 n n C10 C11 RET sing 302 n n C10 H10 RET sing 303 n n C11 C12 RET doub 304 e n C11 H11 RET sing 305 n n C12 C13 RET sing 306 n n C12 H12 RET sing 307 n n C13 C14 RET doub 308 e n C13 C20 RET sing 309 n n C14 C15 RET sing 310 n n C14 H14 RET sing 311 n n C15 O1 RET doub 312 n n C15 H15 RET sing 313 n n C16 H161 RET sing 314 n n C16 H162 RET sing 315 n n C16 H163 RET sing 316 n n C17 H171 RET sing 317 n n C17 H172 RET sing 318 n n C17 H173 RET sing 319 n n C18 H181 RET sing 320 n n C18 H182 RET sing 321 n n C18 H183 RET sing 322 n n C19 H191 RET sing 323 n n C19 H192 RET sing 324 n n C19 H193 RET sing 325 n n C20 H201 RET sing 326 n n C20 H202 RET sing 327 n n C20 H203 RET sing 328 n n # _atom_sites.entry_id 3UTX _atom_sites.fract_transf_matrix[1][1] 0.022052 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.009616 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 2 RET B 1 301 301 RET RET . E 3 D12 B 1 401 401 D12 D12 . F 4 HOH A 1 501 501 HOH HOH . F 4 HOH A 2 502 502 HOH HOH . F 4 HOH A 3 503 503 HOH HOH . F 4 HOH A 4 504 504 HOH HOH . F 4 HOH A 5 505 505 HOH HOH . F 4 HOH A 6 508 508 HOH HOH . F 4 HOH A 7 509 509 HOH HOH . F 4 HOH A 8 511 511 HOH HOH . G 4 HOH B 1 506 506 HOH HOH . G 4 HOH B 2 507 507 HOH HOH . G 4 HOH B 3 510 510 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . D 2 -15.62 -0.75 -27.902 1 42.51 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . D 2 -14.82 -1.994 -27.411 1 42.89 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . D 2 -14.262 -1.972 -26.03 1 43.55 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . D 2 -13.647 -0.63 -25.582 1 44.45 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . D 2 -14.402 0.662 -26.023 1 44.07 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . D 2 -15.326 0.614 -27.098 1 43.07 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . D 2 -15.986 1.928 -27.393 1 42.95 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . D 2 -16.918 2.298 -28.33 1 43.54 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . D 2 -17.546 3.6 -28.53 1 45.11 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . D 2 -18.431 3.578 -29.576 1 45.6 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . D 2 -19.21 4.767 -29.974 1 47.75 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . D 2 -20.01 4.509 -31.047 1 47.95 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . D 2 -20.904 5.475 -31.683 1 47.99 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . D 2 -21.544 4.867 -32.727 1 47.85 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . D 2 -22.496 5.488 -33.589 1 47.39 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . D 2 -15.254 -0.589 -29.417 1 42.28 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . D 2 -17.112 -1.262 -27.757 1 40.47 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . D 2 -13.962 1.805 -25.134 1 43.99 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . D 2 -17.245 4.805 -27.662 1 44.51 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . D 2 -21.064 6.896 -31.228 1 46.84 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 20 #